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MacroAPE 1083:7-GTGTGTGTGT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.348;6.612;325.38;15.66!2;33.06;74.472;0.348;240.12!3;0.348;12.18;335.124;0.348!4;13.92;95.7;0.348;238.032!5;0.348;5.22;342.084;0.348!6;33....")
 
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708865!12182-129A4;0.480437!12183-129A5;0.64389!12184-129A6;0.553539!10809-111A8;0.630363!10597-108E3;0.211965!10717-109I6;0.69801!10455-106G5;0.162656!10534-107G3;0.926372!10429-106D6;0.16015!10464-106H5;0.667069!10827-111C8;0.353359!10789-110H6;0.204347!10828-111C9;0.487189!10788-110H5;0.640901!10792-110H9;0.0203122!10765-110E9;0.217373!10829-111D1;0.731118!10830-111D2;0.304441!10831-111D3;0.100137!10832-111D4;0.27946!10833-111D5;0.829804!10764-110E8;0.803509!10770-110F5;0.929912!10399-106A3;0.287242!10400-106A4;0.407865!10405-106A9;0.293793!10834-111D6;0.505826!10835-111D7;0.435865!10836-111D8;0.506089!10837-111D9;0.410825!10699-109G6;0.993343!10802-111A1;0.380025!10796-110I4;0.78651!10010-101C1;0.392207!10810-111A9;0.105081!10421-106C7;0.901459!10708-109H6;0.497517!12235-129G3;0.286249!12236-129G4;0.0525452!12237-129G5;0.00501342!10167-103B5;0.0895355!10151-102I7;9.50151e-06!10428-106D5;1.47534e-05!10795-110I3;0.00296728!10805-111A4;0.619724!10052-101G7;0.76014!10189-103D9;0.0854798!10589-108D4;0.211436!10425-106D2;0.225917!10427-106D4;0.508809!10702-109G9;0.123309!10432-106D9;0.300528!10496-107C1;0.438944!10718-109I7;0.384402!10011-101C2;0.565565!10053-101G8;0.0125884!10686-109F2;0.812994!10084-102B3;0.625249!10012-101C3;3.95428e-05!10085-102B4;0.000108954!10482-107A5;0.000126915!10419-106C5;0.865363!10080-102A8;0.448494!10760-110E4;0.0602226!10709-109H7;0.695808!10710-109H8;0.893335!10703-109H1;0.283598!10719-109I8;0.0125016!10642-109A3;0.0346159!10177-103C6;0.0989559!10164-103B2;4.96011e-06!10173-103C2;4.8822e-06!10166-103B4;4.09887e-05!10083-102B2;1.14832e-05!10188-103D8;2.96113e-06!10552-107I3;1.28052e-05!10553-107I4;0.232191!10013-101C4;0.739103!10536-107G5;0.169199!10618-108G6;0.928954!10423-106C9;0.0630554!10785-110H2;0.141491!12238-129G6;0.157681!12239-129G7;0.0270112!12240-129G8;0.00461878!10416-106C2;0.0898026!10801-110I9;0.426015!10766-110F1;0.390965!10824-111C5;0.645507!10825-111C6;0.439146!10826-111C7;0.243851!10454-106G4;0.22093!10409-106B4;0.757418!10638-108I8;0.857994!10636-108I6;0.726524!10513-107D9;0.266226!10420-106C6;0.0359462!10082-102B1;0.183301!10014-101C5;0.725726!10070-101I7;0.286299!10452-106G2;0.381018!10453-106G3;0.275855!10449-106F8;0.158881!10042-101F6;0.16885!10069-101I6;0.000109237!10193-103E4;0.116448!10631-108I1;1.48145e-05!10438-106E6;0.441198!10488-107B2;0.489921!10196-103E7;0.102013!10071-101I8;0.247397!10071-101I8;0.48964!10041-101F5;2.42352e-05!10451-106G1;0.0838384!10450-106F9;0.511206!10604-108F1;0.810253!10605-108F2;0.773579!10606-108F3;0.86022!10603-108E9;0.424568!10497-107C2;0.883287!10448-106F7;0.280074!10643-109A4;0.282131!10426-106D3;0.495757!10431-106D8;0.148019!10197-103E8;0.980842!10443-106F2;0.793032!10815-111B5;0.977131!10816-111B6;0.638334!10817-111B7;0.811823!10015-101C6;0.574966!10410-106B5;0.416171!10054-101G9;0.469326!10758-110E2;0.000861701!10711-109H9;0.819888!10040-101F4;0.907617!10470-106I2;4.31532e-05!10415-106C1;0.096341!10198-103E9;0.186623!10614-108G2;0.587756!10612-108F9;0.236055!10549-107H9;0.767837!10615-108G3;0.773408!10487-107B1;0.28061!10433-106E1;0.973875!10688-109F4;0.457379!10444-106F3;0.57056!10444-106F3;0.0228418!10485-107A8;0.0340225!10413-106B8;0.671655!10175-103C4;0.767772!10161-103A8;1.27151e-05!12131-128D7;0.000124276!10624-108H3;0.288515!10712-109I1;0.61567!10205-103F7;0.994406!10206-103F8;0.00623012!10207-103F9;0.000304486!10050-101G5;0.00252865!10051-101G6;0.27761!10016-101C7;0.0330759!10046-101G1;0.0428339!10778-110G4;0.00570546!10633-108I3;0.14851!10818-111B8;0.894141!10819-111B9;0.0718873!10820-111C1;0.0445827!10484-107A7;0.0886123!10808-111A7;0.957433!10169-103B7;0.84921!10153-102I9;6.04398e-05!13425-144D5;1.56892e-05!13433-144E4;0.0410402!13437-144E8;0.0202574!11904-125F5;0.00981543!11905-125F6;0.992556!10039-101F3;0.511017!10791-110H8;2.44091e-05!10017-101C8;0.24145!10045-101F9;0.571348!10509-107D5;0.177748!10839-111E2;0.492772!10692-109F8;0.201483!10079-102A7;0.246499!10078-102A6;0.0225689!10721-110A1;0.0784213!10569-108B2;0.100439!10570-108B3;0.066777!10571-108B4;0.0032506!10647-109A8;0.0403999!10752-110D5;0.478506!10782-110G8;0.188518!10726-110A6;0.0266998!10018-101C9;0.223244!10086-102B5;0.420276!10182-103D2;0.185591!10165-103B3;2.50274e-05!10499-107C4;4.18283e-05!10408-106B3;0.688538!10019-101D1;0.351476!10068-101I5;0.408282!10075-102A3;0.00784723!10077-102A5;0.451845!10727-110A7;0.574839!10775-110G1;0.98491!10412-106B7;0.917652!12231-129F8;0.790843!12232-129F9;0.0475902!12233-129G1;0.0406849!12234-129G2;0.0932153!10414-106B9;0.0712243!10170-103B8;0.292724!10183-103D3;0.000118735!10150-102I6;8.71572e-05!10174-103C3;0.000102228!10155-103A2;3.07922e-06!10038-101F2;6.61815e-06!10838-111E1;4.5916e-05!10759-110E3;0.0437421!10514-107E1;0.908102!10465-106H6;0.460833!10691-109F7;0.0400481!10843-111E6;0.0648667!10844-111E7;0.0388523!11747-123G1;0.0251716!11748-123G2;0.0144622!11749-123G3;0.260907!11750-123G4;0.202626!11751-123G5;0.901208!11840-124H4;0.735462!11752-123G6;0.6333!11753-123G7;0.226349!11754-123G8;0.618952!11755-123G9;0.0208831!11756-123H1;0.00711636!11833-124G6;0.0244499!11760-123H5;0.622527!11836-124G9;0.0547068!11758-123H3;0.134914!11835-124G8;0.00682229!11762-123H7;0.0193578!11838-124H2;0.151007!11757-123H2;0.00733345!11759-123H4;0.0574492!11761-123H6;0.19284!11842-124H6;0.326963!11837-124H1;0.629084!10568-108B1;0.0465582!13230-141I8;0.0242035!13231-141I9;0.18444!10696-109G3;0.146734!10493-107B7;0.556713!10494-107B8;0.832278!10850-111F4;0.00246608!10851-111F5;0.0664145!10852-111F6;0.0321073!10853-111F7;0.0154416!10854-111F8;0.0305519!10855-111F9;0.652039!10856-111G1;0.00179666!10847-111F1;0.0864782!10846-111E9;0.396565!10848-111F2;0.101062!10845-111E8;0.187309!10857-111G2;0.606184!10858-111G3;0.256683!10156-103A3;0.269778!11901-125F2;6.43168e-05!11902-125F3;0.0490996!11903-125F4;0.261203!10689-109F5;0.13017!10648-109A9;0.37629!10784-110H1;0.446809!10744-110C6;0.29257!10772-110F7;0.876096!10474-106I6;0.0637861!10600-108E6;0.706248!10684-109E9;0.0661836!12226-129F3;0.761859!12227-129F4;0.721816!10508-107D4;0.172073!10539-107G8;0.0174398!10607-108F4;0.0814887!10555-107I6;0.297109!10774-110F9;0.0209245!10637-108I7;0.444977!10663-109C6;0.0439224!10728-110A8;0.218946!10729-110A9;0.0180217!10430-106D7;0.29895!10730-110B1;0.292646!10813-111B3;0.393695!10812-111B2;0.380204!10037-101F1;0.0163545!10172-103C1;1.87166e-05!10163-103B1;0.000107997!10076-102A4;6.76402e-05!10073-102A1;8.21903e-05!10036-101E9;8.35687e-05!10195-103E6;5.52512e-05!10277-104E7;7.18744e-06!10434-106E2;0.00624278!10550-107I1;0.462245!10545-107H5;0.546534!10544-107H4;0.381124!10704-109H2;0.644896!10510-107D6;0.258014!10558-107I9;0.571255!10020-101D2;0.0377153!10732-110B3;0.000526337!10049-101G4;0.968578!10698-109G5;0.21246!10437-106E5;0.700094!10417-106C3;0.834705!10035-101E8;0.368045!10171-103B9;7.32585e-05!10157-103A4;0.000133528!10034-101E7;7.33316e-05!10072-101I9;8.09675e-05!10199-103F1;4.89309e-05!10200-103F2;0.0031722!10697-109G4;0.273022!10723-110A3;0.100235!10179-103C8;0.51654!10160-103A7;0.00750277!10180-103C9;0.0146395!10162-103A9;0.00488687!10021-101D3;0.000958412!10840-111E3;0.0789411!10706-109H4;0.157644!10033-101E6;0.0146369!10032-101E5;0.000190686!10490-107B4;8.96054e-05!10439-106E7;0.341672!10022-101D4;0.899884!10176-103C5;0.068546!10469-106I1;4.13804e-06!10067-101I4;0.906698!10411-106B6;0.277452!10471-106I3;0.326276!10030-101E3;0.0923838!10475-106I7;0.000722087!10787-110H4;0.23938!10477-106I9;0.404797!10695-109G2;0.629773!11771-123I7;0.987957!11772-123I8;0.266339!11773-123I9;0.311594!10093-102C3;0.824575!10442-106F1;0.000114634!10442-106F1;0.0671507!10201-103F3;0.273184!10639-108I9;0.0378181!11843-124H7;0.295045!11841-124H5;0.876463!10693-109F9;0.478764!10436-106E4;0.605089!10483-107A6;0.179187!10282-104F3;0.215247!10023-101D5;0.024976!10066-101I3;0.0636514!10065-101I2;0.435353!10800-110I8;0.403897!10610-108F7;0.98735!10841-111E4;0.88784!10541-107H1;0.713525!10842-111E5;0.826383!10562-108A4;0.117833!10024-101D6;0.169724!10064-101I1;0.676214!10609-108F6;0.699802!10048-101G3;0.949175!10781-110G7;0.000148735!10181-103D1;0.36609!10159-103A6;6.75833e-05!10056-101H2;5.10989e-05!10737-110B8;0.00109713!10025-101D7;0.0765388!10044-101F8;0.532643!10424-106D1;0.523976!10463-106H4;0.894842!10616-108G4;0.873172!10486-107A9;0.2587!10062-101H8;0.651319!10202-103F4;0.762753!10158-103A5;0.0022292!10441-106E9;0.00312775!10031-101E4;0.519995!10063-101H9;3.28992e-05!10063-101H9;6.76704e-05!11763-123H8;0.184742!11765-123I1;0.0929643!11768-123I4;0.720386!10807-111A6;0.130472!10790-110H7;0.0618677!10798-110I6;0.176112!10786-110H3;0.0549029!10591-108D6;0.00897966!10593-108D8;0.0275187!10590-108D5;0.253397!10026-101D8;0.0682615!10096-102C6;0.480022!10168-103B6;0.286424!10154-103A1;2.26528e-05!10209-103G2;4.20971e-05!10061-101H7;0.290138!10027-101D9;0.420385!10043-101F7;0.118321!10783-110G9;0.223695!10028-101E1;0.609716!10060-101H6;0.0962023!10203-103F5;0.137123!10059-101H5;0.393984!10047-101G2;0.522248!10029-101E2;0.725304!10058-101H4;0.416471!10418-106C4;0.295718!10492-107B6;0.674296!10694-109G1;0.975916!10797-110I5;0.661908!10057-101H3;0.601591!10100-102D1;0.892516!10055-101H1;0.00235932!10204-103F6;0.820852!10191-103E2;0.0136001!10563-108A5;0.18561
|name=7-GTGTGTGTGT,CNhs11797,BestGuess:EGR3_f1_HM09(0.732943158952493),T:348.0(8.45%),B:1816.2(4.10%),P:1e-34
|name=7-GTGTGTGTGT,CNhs11797,BestGuess:EGR3_f1_HM09(0.732943158952493),T:348.0(8.45%),B:1816.2(4.10%),P:1e-34
|tomtom_result=RAP1#MA0359.1;1;0.00427809;2.03637;1;9;GTGTGTGTGT;TGTATGGGTG;-!Arnt::Ahr#MA0006.1;-1;0.00509476;2.4251;1;6;GTGTGTGTGT;TGCGTG;+!Egr1#MA0162.1;1;0.0057432;2.73376;1;10;GTGTGTGTGT;TGCGTGGGCGT;+!AFT2#MA0270.1;-1;0.0132865;6.32438;1;8;GTGTGTGTGT;GGGGTGTG;-!z#MA0255.1;0;0.0169141;8.05112;1;10;GTGTGTGTGT;TTGAGTGATT;+!FOXI1#MA0042.1;0;0.0185344;8.82237;1;10;GTGTGTGTGT;GGATGTTTGTTT;+
}}
}}

Latest revision as of 12:33, 7 September 2012

Full Name: 7-GTGTGTGTGT,CNhs11797,BestGuess:EGR3_f1_HM09(0.732943158952493),T:348.0(8.45%),B:1816.2(4.10%),P:1e-34

Motif matrix
POACGT
10.3486.612325.3815.66
233.0674.4720.348240.12
30.34812.18335.1240.348
413.9295.70.348238.032
50.3485.22342.0840.348
633.0658.8120.348255.78
70.34816.008331.2960.348
811.83265.4240.348270.396
91.7415.66330.2520.348
1036.5479.6920.348231.42

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RAP1#MA0359.110.004278092.0363719GTGTGTGTGTTGTATGGGTG-
Arnt::Ahr#MA0006.1-10.005094762.425116GTGTGTGTGTTGCGTG+
Egr1#MA0162.110.00574322.73376110GTGTGTGTGTTGCGTGGGCGT+
AFT2#MA0270.1-10.01328656.3243818GTGTGTGTGTGGGGTGTG-
z#MA0255.100.01691418.05112110GTGTGTGTGTTTGAGTGATT+
FOXI1#MA0042.100.01853448.82237110GTGTGTGTGTGGATGTTTGTTT+
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