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MacroAPE 1083:3-ATAAADCGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;523.594;16.152;20.863;112.391!2;127.197;111.045;11.441;423.317!3;504.077;80.087;6.73;82.106!4;556.571;38.361;2.019;76.049!5;507.442;6.73;57....")
 
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9A5;0.041367!12184-129A6;0.0225657!10809-111A8;0.0328691!10597-108E3;4.38225e-05!10717-109I6;0.010399!10455-106G5;0.00322546!10534-107G3;0.220473!10429-106D6;0.529351!10464-106H5;0.58831!10827-111C8;0.91705!10789-110H6;0.960778!10828-111C9;0.401094!10788-110H5;0.54891!10792-110H9;0.612251!10765-110E9;0.636419!10829-111D1;0.0440292!10830-111D2;0.52633!10831-111D3;0.275603!10832-111D4;0.51483!10833-111D5;0.25474!10764-110E8;0.732456!10770-110F5;0.533521!10399-106A3;0.134789!10400-106A4;0.527521!10405-106A9;0.600667!10834-111D6;0.680779!10835-111D7;0.567593!10836-111D8;0.639847!10837-111D9;0.998584!10699-109G6;0.212816!10802-111A1;0.869031!10796-110I4;0.583305!10010-101C1;0.61489!10810-111A9;0.501387!10421-106C7;0.0316733!10708-109H6;0.115959!12235-129G3;0.203596!12236-129G4;0.259053!12237-129G5;0.80149!10167-103B5;0.68897!10151-102I7;0.953956!10428-106D5;0.743011!10795-110I3;0.498054!10805-111A4;0.224943!10052-101G7;0.0199474!10189-103D9;0.817808!10589-108D4;0.543992!10425-106D2;0.95696!10427-106D4;0.646131!10702-109G9;0.691022!10432-106D9;0.687687!10496-107C1;0.0249178!10718-109I7;0.387088!10011-101C2;0.803484!10053-101G8;0.255836!10686-109F2;0.0174354!10084-102B3;0.470723!10012-101C3;0.699415!10085-102B4;0.604692!10482-107A5;0.420851!10419-106C5;0.49628!10080-102A8;0.131669!10760-110E4;0.805744!10709-109H7;0.0619755!10710-109H8;0.288373!10703-109H1;0.199109!10719-109I8;0.459108!10642-109A3;0.0306225!10177-103C6;0.634803!10164-103B2;0.418446!10173-103C2;0.346645!10166-103B4;0.973098!10083-102B2;0.613242!10188-103D8;0.696093!10552-107I3;0.829359!10553-107I4;0.00421739!10013-101C4;0.101729!10536-107G5;0.609522!10618-108G6;0.205588!10423-106C9;0.00102681!10785-110H2;0.155229!12238-129G6;0.871467!12239-129G7;0.856367!12240-129G8;0.290319!10416-106C2;0.293231!10801-110I9;0.49189!10766-110F1;0.820484!10824-111C5;0.981603!10825-111C6;0.120515!10826-111C7;0.0558349!10454-106G4;0.0533968!10409-106B4;0.137968!10638-108I8;0.989422!10636-108I6;0.163085!10513-107D9;2.38808e-05!10420-106C6;0.456141!10082-102B1;0.445489!10014-101C5;0.775224!10070-101I7;0.461797!10452-106G2;0.909584!10453-106G3;0.881358!10449-106F8;0.593158!10042-101F6;0.56722!10069-101I6;0.856994!10193-103E4;0.231375!10631-108I1;0.921463!10438-106E6;0.809182!10488-107B2;0.259253!10196-103E7;0.004999!10071-101I8;0.777931!10071-101I8;0.311949!10041-101F5;0.382417!10451-106G1;0.616641!10450-106F9;0.0136891!10604-108F1;0.00670711!10605-108F2;0.0461555!10606-108F3;0.160362!10603-108E9;0.063343!10497-107C2;0.0317705!10448-106F7;0.00131523!10643-109A4;0.108746!10426-106D3;0.0194137!10431-106D8;0.0581997!10197-103E8;0.000322507!10443-106F2;0.643564!10815-111B5;5.28405e-05!10816-111B6;0.00119223!10817-111B7;0.00194485!10015-101C6;0.00200204!10410-106B5;0.312638!10054-101G9;0.000114696!10758-110E2;0.188459!10711-109H9;0.531526!10040-101F4;0.104901!10470-106I2;0.649865!10415-106C1;0.084666!10198-103E9;0.269575!10614-108G2;0.539047!10612-108F9;0.668885!10549-107H9;0.403086!10615-108G3;0.168655!10487-107B1;0.386652!10433-106E1;0.964711!10688-109F4;0.159827!10444-106F3;0.495929!10444-106F3;9.83157e-05!10485-107A8;8.85785e-05!10413-106B8;0.453136!10175-103C4;0.599216!10161-103A8;0.420811!12131-128D7;0.360418!10624-108H3;0.920702!10712-109I1;0.330982!10205-103F7;0.467656!10206-103F8;0.324024!10207-103F9;0.713553!10050-101G5;0.641283!10051-101G6;0.00067496!10016-101C7;0.329209!10046-101G1;0.216613!10778-110G4;0.0889105!10633-108I3;0.849048!10818-111B8;0.0047418!10819-111B9;0.3403!10820-111C1;0.362284!10484-107A7;0.337911!10808-111A7;0.132752!10169-103B7;0.811876!10153-102I9;0.873876!13425-144D5;0.720111!13433-144E4;0.377559!13437-144E8;0.313153!11904-125F5;0.331189!11905-125F6;0.257853!10039-101F3;0.343594!10791-110H8;0.7442!10017-101C8;0.576425!10045-101F9;0.901526!10509-107D5;0.350683!10839-111E2;0.122222!10692-109F8;0.916049!10079-102A7;0.000124964!10078-102A6;0.395481!10721-110A1;0.164643!10569-108B2;0.00393559!10570-108B3;0.74427!10571-108B4;0.723278!10647-109A8;0.397445!10752-110D5;0.00752552!10782-110G8;0.274472!10726-110A6;0.703238!10018-101C9;0.0579191!10086-102B5;0.0366596!10182-103D2;0.786902!10165-103B3;0.857667!10499-107C4;0.611431!10408-106B3;0.308418!10019-101D1;0.78747!10068-101I5;0.595771!10075-102A3;0.444976!10077-102A5;0.4151!10727-110A7;0.205159!10775-110G1;0.310957!10412-106B7;0.130062!12231-129F8;0.747114!12232-129F9;0.941494!12233-129G1;0.621582!12234-129G2;0.524823!10414-106B9;0.70111!10170-103B8;0.721114!10183-103D3;0.662884!10150-102I6;0.431015!10174-103C3;0.364686!10155-103A2;0.717591!10038-101F2;0.954831!10838-111E1;0.653147!10759-110E3;0.000353796!10514-107E1;0.541015!10465-106H6;0.287909!10691-109F7;0.867417!10843-111E6;0.932806!10844-111E7;0.567556!11747-123G1;0.0289801!11748-123G2;0.70184!11749-123G3;0.742743!11750-123G4;0.960256!11751-123G5;0.119883!11840-124H4;0.106536!11752-123G6;0.320584!11753-123G7;0.588403!11754-123G8;0.841636!11755-123G9;0.0453944!11756-123H1;0.420354!11833-124G6;0.800066!11760-123H5;0.821001!11836-124G9;0.591172!11758-123H3;0.59512!11835-124G8;0.568516!11762-123H7;0.300145!11838-124H2;0.801793!11757-123H2;0.389814!11759-123H4;0.560025!11761-123H6;0.778784!11842-124H6;0.93309!11837-124H1;0.327842!10568-108B1;0.206356!13230-141I8;0.498787!13231-141I9;0.503803!10696-109G3;0.794971!10493-107B7;0.273896!10494-107B8;0.00177029!10850-111F4;0.0262148!10851-111F5;0.0744763!10852-111F6;0.210743!10853-111F7;0.324957!10854-111F8;0.00237545!10855-111F9;0.227112!10856-111G1;0.464681!10847-111F1;0.0863886!10846-111E9;0.0137193!10848-111F2;0.0239639!10845-111E8;0.0140184!10857-111G2;0.0310493!10858-111G3;0.641507!10156-103A3;0.00237002!11901-125F2;0.426873!11902-125F3;0.0148425!11903-125F4;0.0180925!10689-109F5;0.0376379!10648-109A9;0.356413!10784-110H1;0.17077!10744-110C6;0.0153023!10772-110F7;0.266279!10474-106I6;0.725384!10600-108E6;0.107144!10684-109E9;1.46532e-05!12226-129F3;0.222207!12227-129F4;0.75204!10508-107D4;0.530611!10539-107G8;0.641746!10607-108F4;0.154576!10555-107I6;0.957531!10774-110F9;0.639816!10637-108I7;0.0250879!10663-109C6;0.839044!10728-110A8;0.50568!10729-110A9;0.0305418!10430-106D7;0.523054!10730-110B1;0.50925!10813-111B3;0.15561!10812-111B2;0.202588!10037-101F1;0.545111!10172-103C1;0.56356!10163-103B1;0.70033!10076-102A4;0.504517!10073-102A1;0.748494!10036-101E9;0.74003!10195-103E6;0.970202!10277-104E7;0.571476!10434-106E2;0.879583!10550-107I1;0.151245!10545-107H5;0.0225632!10544-107H4;0.773398!10704-109H2;0.0535236!10510-107D6;0.745885!10558-107I9;0.00302209!10020-101D2;0.88848!10732-110B3;0.327678!10049-101G4;0.341256!10698-109G5;0.635105!10437-106E5;0.366667!10417-106C3;0.198232!10035-101E8;0.249701!10171-103B9;0.836559!10157-103A4;0.546654!10034-101E7;0.468716!10072-101I9;0.744625!10199-103F1;0.478135!10200-103F2;0.104843!10697-109G4;0.381861!10723-110A3;0.111241!10179-103C8;0.0264609!10160-103A7;0.456946!10180-103C9;0.324949!10162-103A9;0.26206!10021-101D3;0.485962!10840-111E3;0.88241!10706-109H4;0.360786!10033-101E6;0.853701!10032-101E5;0.664654!10490-107B4;0.858064!10439-106E7;0.00209431!10022-101D4;0.296515!10176-103C5;0.221959!10469-106I1;0.345059!10067-101I4;0.0968794!10411-106B6;0.467711!10471-106I3;0.668673!10030-101E3;0.0387092!10475-106I7;0.0965355!10787-110H4;0.000175374!10477-106I9;0.0165514!10695-109G2;0.00209431!11771-123I7;0.199664!11772-123I8;0.743817!11773-123I9;0.802308!10093-102C3;0.434242!10442-106F1;0.160711!10442-106F1;0.66486!10201-103F3;0.805383!10639-108I9;0.917507!11843-124H7;0.296979!11841-124H5;0.203011!10693-109F9;0.731349!10436-106E4;0.19028!10483-107A6;0.533201!10282-104F3;0.25687!10023-101D5;0.0425423!10066-101I3;0.0042387!10065-101I2;0.0307209!10800-110I8;0.359386!10610-108F7;0.00328726!10841-111E4;0.0817481!10541-107H1;3.82312e-05!10842-111E5;0.642164!10562-108A4;0.00550028!10024-101D6;0.101985!10064-101I1;0.130797!10609-108F6;0.492271!10048-101G3;0.0590545!10781-110G7;0.163179!10181-103D1;0.469659!10159-103A6;0.687207!10056-101H2;0.23388!10737-110B8;0.266663!10025-101D7;0.427638!10044-101F8;0.356545!10424-106D1;0.508185!10463-106H4;0.10449!10616-108G4;0.310123!10486-107A9;0.301352!10062-101H8;0.0642295!10202-103F4;0.112675!10158-103A5;0.3776!10441-106E9;0.36329!10031-101E4;0.00179742!10063-101H9;0.973453!10063-101H9;0.464554!11763-123H8;0.244727!11765-123I1;0.412708!11768-123I4;0.226967!10807-111A6;0.984956!10790-110H7;0.210305!10798-110I6;0.756215!10786-110H3;0.0458722!10591-108D6;0.511555!10593-108D8;0.574395!10590-108D5;0.123652!10026-101D8;0.130316!10096-102C6;0.611069!10168-103B6;0.11089!10154-103A1;0.852471!10209-103G2;0.355736!10061-101H7;0.386126!10027-101D9;0.1657!10043-101F7;0.766035!10783-110G9;0.811828!10028-101E1;0.000483135!10060-101H6;0.782098!10203-103F5;0.37296!10059-101H5;0.569331!10047-101G2;0.326529!10029-101E2;0.660075!10058-101H4;0.639426!10418-106C4;0.666927!10492-107B6;0.15528!10694-109G1;0.0198084!10797-110I5;0.0281598!10057-101H3;0.605862!10100-102D1;0.751293!10055-101H1;0.931907!10204-103F6;0.913032!10191-103E2;0.642106!10563-108A5;0.467958
|name=3-ATAAADCGC,CNhs12726,BestGuess:CDX2_f1_HM09(0.712194436039008),T:673.0(38.81%),B:11966.5(25.88%),P:1e-31
|name=3-ATAAADCGC,CNhs12726,BestGuess:CDX2_f1_HM09(0.712194436039008),T:673.0(38.81%),B:11966.5(25.88%),P:1e-31
|tomtom_result=TBP#MA0108.2;2;0.000630293;0.300019;0.300019;9;ATAAAACGC;GTATAAAAGGCGGGG;+!TBP#MA0108.2;2;0.000630293;0.300019;0.300019;9;ATAAAACGC;GTATAAAAGGCGGGG;+!MEF2A#MA0052.1;2;0.00740252;3.5236;1;8;ATAAAACGC;CTATAAATAG;-!AGL3#MA0001.1;2;0.0118069;5.62008;1;8;ATAAAACGC;CCATAAATAG;+!cad#MA0216.1;2;0.0124566;5.92937;1;5;ATAAAACGC;CAATAAA;-!NHP6B#MA0346.1;11;0.0161136;7.67006;1;9;ATAAAACGC;TTTATTTATATATAATATGA;+!Abd-B#MA0165.1;2;0.0162547;7.73726;1;5;ATAAAACGC;TCATAAA;-!squamosa#MA0082.1;2;0.0175116;8.33554;1;9;ATAAAACGC;CCAAAAATGGAAAT;+
}}
}}

Latest revision as of 13:35, 7 September 2012

Full Name: 3-ATAAADCGC,CNhs12726,BestGuess:CDX2_f1_HM09(0.712194436039008),T:673.0(38.81%),B:11966.5(25.88%),P:1e-31

Motif matrix
POACGT
1523.59416.15220.863112.391
2127.197111.04511.441423.317
3504.07780.0876.7382.106
4556.57138.3612.01976.049
5507.4426.7357.878100.95
6251.70222.882194.497203.919
7178.345485.9064.7114.038
80.673104.315567.3390.673
9115.756434.085115.7567.403

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TBP#MA0108.220.0006302930.3000190.3000199ATAAAACGCGTATAAAAGGCGGGG+
TBP#MA0108.220.0006302930.3000190.3000199ATAAAACGCGTATAAAAGGCGGGG+
MEF2A#MA0052.120.007402523.523618ATAAAACGCCTATAAATAG-
AGL3#MA0001.120.01180695.6200818ATAAAACGCCCATAAATAG+
cad#MA0216.120.01245665.9293715ATAAAACGCCAATAAA-
NHP6B#MA0346.1110.01611367.6700619ATAAAACGCTTTATTTATATATAATATGA+
Abd-B#MA0165.120.01625477.7372615ATAAAACGCTCATAAA-
squamosa#MA0082.120.01751168.3355419ATAAAACGCCCAAAAATGGAAAT+
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