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MacroAPE 1083:9-AATRCATCGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;709.59;160.58;71.61;143.22!2;598.92;240.87;167.09;78.12!3;205.065;158.41;2.17;719.355!4;505.61;180.11;364.56;34.72!5;288.61;747.565;47.74;1....")
 
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-111C9;0.605658!10788-110H5;0.833011!10792-110H9;0.344142!10765-110E9;0.962772!10829-111D1;0.665957!10830-111D2;0.590693!10831-111D3;0.605465!10832-111D4;0.307662!10833-111D5;0.167264!10764-110E8;0.30908!10770-110F5;0.452458!10399-106A3;0.406629!10400-106A4;0.179987!10405-106A9;0.165646!10834-111D6;0.10658!10835-111D7;0.725509!10836-111D8;0.265149!10837-111D9;0.536692!10699-109G6;0.434348!10802-111A1;0.538786!10796-110I4;0.241548!10010-101C1;0.292736!10810-111A9;0.863272!10421-106C7;0.880546!10708-109H6;0.519776!12235-129G3;0.399011!12236-129G4;0.285184!12237-129G5;0.353779!10167-103B5;0.193678!10151-102I7;0.0232069!10428-106D5;0.0095869!10795-110I3;0.254502!10805-111A4;0.136399!10052-101G7;0.406006!10189-103D9;0.694619!10589-108D4;0.941312!10425-106D2;0.920498!10427-106D4;0.477266!10702-109G9;0.148628!10432-106D9;0.435833!10496-107C1;0.102576!10718-109I7;0.371815!10011-101C2;0.600096!10053-101G8;0.678014!10686-109F2;0.817573!10084-102B3;0.896599!10012-101C3;0.000241938!10085-102B4;0.00684363!10482-107A5;0.0302315!10419-106C5;0.551265!10080-102A8;0.950972!10760-110E4;0.76944!10709-109H7;0.274146!10710-109H8;0.289433!10703-109H1;0.959382!10719-109I8;0.575435!10642-109A3;0.546011!10177-103C6;0.45584!10164-103B2;0.0119913!10173-103C2;0.007546!10166-103B4;0.000861237!10083-102B2;0.000969554!10188-103D8;6.42821e-05!10552-107I3;0.0129483!10553-107I4;0.546171!10013-101C4;0.180411!10536-107G5;0.901694!10618-108G6;0.960261!10423-106C9;0.631537!10785-110H2;0.855232!12238-129G6;0.857612!12239-129G7;0.940593!12240-129G8;0.84822!10416-106C2;0.885348!10801-110I9;0.57471!10766-110F1;0.690348!10824-111C5;0.446044!10825-111C6;0.324693!10826-111C7;0.312482!10454-106G4;0.197837!10409-106B4;0.501007!10638-108I8;0.199555!10636-108I6;0.709757!10513-107D9;0.399495!10420-106C6;0.301053!10082-102B1;0.985928!10014-101C5;0.590512!10070-101I7;0.853422!10452-106G2;0.793587!10453-106G3;0.54911!10449-106F8;0.546241!10042-101F6;0.471219!10069-101I6;0.00222004!10193-103E4;0.993974!10631-108I1;0.000254438!10438-106E6;0.40355!10488-107B2;0.333292!10196-103E7;0.942929!10071-101I8;0.135524!10071-101I8;0.892049!10041-101F5;0.0355567!10451-106G1;0.880395!10450-106F9;0.747168!10604-108F1;0.922303!10605-108F2;0.460725!10606-108F3;0.590625!10603-108E9;0.63407!10497-107C2;0.944753!10448-106F7;0.491179!10643-109A4;0.446978!10426-106D3;0.497427!10431-106D8;0.331424!10197-103E8;0.683366!10443-106F2;0.483824!10815-111B5;0.525985!10816-111B6;0.258884!10817-111B7;0.24051!10015-101C6;0.260223!10410-106B5;0.925027!10054-101G9;0.0698223!10758-110E2;0.293201!10711-109H9;0.85473!10040-101F4;0.428992!10470-106I2;0.0137733!10415-106C1;0.470901!10198-103E9;0.136032!10614-108G2;0.921365!10612-108F9;0.699992!10549-107H9;0.155859!10615-108G3;0.733618!10487-107B1;0.63117!10433-106E1;0.0261043!10688-109F4;0.399319!10444-106F3;0.538438!10444-106F3;0.120839!10485-107A8;0.117104!10413-106B8;0.378641!10175-103C4;0.392941!10161-103A8;0.00789308!12131-128D7;0.00765657!10624-108H3;0.580572!10712-109I1;0.847009!10205-103F7;0.305666!10206-103F8;0.839784!10207-103F9;0.654799!10050-101G5;0.945466!10051-101G6;0.82438!10016-101C7;0.629841!10046-101G1;0.816835!10778-110G4;0.782831!10633-108I3;0.834542!10818-111B8;0.247696!10819-111B9;0.165716!10820-111C1;0.165727!10484-107A7;0.13603!10808-111A7;0.764059!10169-103B7;0.662839!10153-102I9;0.00998184!13425-144D5;0.0108813!13433-144E4;0.844898!13437-144E8;0.995994!11904-125F5;0.996536!11905-125F6;0.732758!10039-101F3;0.579356!10791-110H8;0.0107144!10017-101C8;0.750999!10045-101F9;0.619828!10509-107D5;0.293249!10839-111E2;0.951295!10692-109F8;0.290383!10079-102A7;0.930189!10078-102A6;0.554314!10721-110A1;0.484172!10569-108B2;0.352798!10570-108B3;0.663455!10571-108B4;0.174176!10647-109A8;0.934082!10752-110D5;0.246216!10782-110G8;0.654666!10726-110A6;0.581108!10018-101C9;0.605879!10086-102B5;0.213019!10182-103D2;0.506104!10165-103B3;0.000545142!10499-107C4;0.000592508!10408-106B3;0.572397!10019-101D1;0.827538!10068-101I5;0.443693!10075-102A3;0.346976!10077-102A5;0.638153!10727-110A7;0.459036!10775-110G1;0.253278!10412-106B7;0.544448!12231-129F8;0.308623!12232-129F9;0.86559!12233-129G1;0.901803!12234-129G2;0.847829!10414-106B9;0.971753!10170-103B8;0.602554!10183-103D3;0.00847134!10150-102I6;0.00632162!10174-103C3;0.0150797!10155-103A2;0.0112977!10038-101F2;0.00404602!10838-111E1;0.00121112!10759-110E3;0.729661!10514-107E1;0.563841!10465-106H6;0.618506!10691-109F7;0.845642!10843-111E6;0.124328!10844-111E7;0.942351!11747-123G1;0.964642!11748-123G2;0.2073!11749-123G3;0.172023!11750-123G4;0.33214!11751-123G5;0.217219!11840-124H4;0.446242!11752-123G6;0.39258!11753-123G7;0.773738!11754-123G8;0.757384!11755-123G9;0.610207!11756-123H1;0.64816!11833-124G6;0.731342!11760-123H5;0.576346!11836-124G9;0.591291!11758-123H3;0.370608!11835-124G8;0.941608!11762-123H7;0.751827!11838-124H2;0.929932!11757-123H2;0.738024!11759-123H4;0.96304!11761-123H6;0.35996!11842-124H6;0.894212!11837-124H1;0.98362!10568-108B1;0.992417!13230-141I8;0.834893!13231-141I9;0.375273!10696-109G3;0.51195!10493-107B7;0.888404!10494-107B8;0.454543!10850-111F4;0.0651826!10851-111F5;0.780381!10852-111F6;0.463976!10853-111F7;0.892253!10854-111F8;0.438904!10855-111F9;0.561601!10856-111G1;0.071967!10847-111F1;0.524536!10846-111E9;0.217533!10848-111F2;0.354872!10845-111E8;0.577081!10857-111G2;0.79023!10858-111G3;0.447108!10156-103A3;0.586447!11901-125F2;0.00926295!11902-125F3;0.815625!11903-125F4;0.656251!10689-109F5;0.74014!10648-109A9;0.589104!10784-110H1;0.81812!10744-110C6;0.237212!10772-110F7;0.620402!10474-106I6;0.744365!10600-108E6;0.93189!10684-109E9;0.829243!12226-129F3;0.0262891!12227-129F4;0.472946!10508-107D4;0.445943!10539-107G8;0.227325!10607-108F4;0.0662023!10555-107I6;0.709186!10774-110F9;0.233612!10637-108I7;0.546027!10663-109C6;0.867075!10728-110A8;0.689281!10729-110A9;0.626946!10430-106D7;0.382612!10730-110B1;0.338483!10813-111B3;0.142917!10812-111B2;0.764903!10037-101F1;0.656435!10172-103C1;0.00851106!10163-103B1;0.00808013!10076-102A4;0.0167864!10073-102A1;0.00104005!10036-101E9;0.0315905!10195-103E6;0.00204608!10277-104E7;0.00710355!10434-106E2;0.00567405!10550-107I1;0.681283!10545-107H5;0.516036!10544-107H4;0.469115!10704-109H2;0.10275!10510-107D6;0.903054!10558-107I9;0.616174!10020-101D2;0.0799718!10732-110B3;0.827584!10049-101G4;0.403795!10698-109G5;0.291174!10437-106E5;0.976317!10417-106C3;0.729094!10035-101E8;0.102192!10171-103B9;0.00645819!10157-103A4;0.0083783!10034-101E7;0.00924001!10072-101I9;0.00581409!10199-103F1;0.0216733!10200-103F2;0.832446!10697-109G4;0.732195!10723-110A3;0.113934!10179-103C8;0.488347!10160-103A7;0.0774393!10180-103C9;0.074767!10162-103A9;0.281111!10021-101D3;0.42128!10840-111E3;0.729178!10706-109H4;0.306676!10033-101E6;0.232825!10032-101E5;0.00042427!10490-107B4;0.00365358!10439-106E7;0.351401!10022-101D4;0.624118!10176-103C5;0.579564!10469-106I1;0.00608879!10067-101I4;0.284726!10411-106B6;0.188255!10471-106I3;0.204191!10030-101E3;0.862715!10475-106I7;0.0811064!10787-110H4;0.886164!10477-106I9;0.909683!10695-109G2;0.061587!11771-123I7;0.432555!11772-123I8;0.351623!11773-123I9;0.426023!10093-102C3;0.778727!10442-106F1;0.637955!10442-106F1;0.665706!10201-103F3;0.616951!10639-108I9;0.21387!11843-124H7;0.37182!11841-124H5;0.679458!10693-109F9;0.841012!10436-106E4;0.331598!10483-107A6;0.075806!10282-104F3;0.0467731!10023-101D5;0.603308!10066-101I3;0.916527!10065-101I2;0.803564!10800-110I8;0.701141!10610-108F7;0.840478!10841-111E4;0.761209!10541-107H1;0.0643453!10842-111E5;0.203504!10562-108A4;0.990632!10024-101D6;0.92241!10064-101I1;0.892686!10609-108F6;0.796078!10048-101G3;0.709166!10781-110G7;0.393285!10181-103D1;0.988032!10159-103A6;0.00381388!10056-101H2;0.00927124!10737-110B8;0.00375213!10025-101D7;0.1187!10044-101F8;0.583!10424-106D1;0.676277!10463-106H4;0.382781!10616-108G4;0.30313!10486-107A9;0.625749!10062-101H8;0.0746587!10202-103F4;0.759263!10158-103A5;0.79757!10441-106E9;0.00117758!10031-101E4;0.57749!10063-101H9;0.00287708!10063-101H9;0.0187502!11763-123H8;0.973283!11765-123I1;0.0912463!11768-123I4;0.157303!10807-111A6;0.272212!10790-110H7;0.154224!10798-110I6;0.138257!10786-110H3;0.826652!10591-108D6;0.158863!10593-108D8;0.504737!10590-108D5;0.454713!10026-101D8;0.357161!10096-102C6;0.837329!10168-103B6;0.865701!10154-103A1;0.00163904!10209-103G2;0.00372264!10061-101H7;0.785761!10027-101D9;0.898934!10043-101F7;0.581751!10783-110G9;0.620583!10028-101E1;0.790519!10060-101H6;0.964779!10203-103F5;0.50741!10059-101H5;0.667567!10047-101G2;0.764157!10029-101E2;0.239797!10058-101H4;0.178366!10418-106C4;0.374347!10492-107B6;0.850554!10694-109G1;0.664482!10797-110I5;0.665271!10057-101H3;0.128419!10100-102D1;0.654139!10055-101H1;0.600804!10204-103F6;0.666228!10191-103E2;0.468526!10563-108A5;0.879459
|name=9-AATRCATCGC,CNhs12311,BestGuess:HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq/Homer(0.61615700032211),T:1085.0(24.58%),B:7771.7(17.68%),P:1e-30
|name=9-AATRCATCGC,CNhs12311,BestGuess:HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq/Homer(0.61615700032211),T:1085.0(24.58%),B:7771.7(17.68%),P:1e-30
|tomtom_result=znf143#MA0088.1;10;0.00268115;1.27623;1;10;AATACATCGC;GATTTCCCATAATGCCTTGC;+!Gata1#MA0035.1;-3;0.00567236;2.70004;1;6;AATACATCGC;CCATCC;-
}}
}}

Latest revision as of 14:51, 7 September 2012

Full Name: 9-AATRCATCGC,CNhs12311,BestGuess:HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq/Homer(0.61615700032211),T:1085.0(24.58%),B:7771.7(17.68%),P:1e-30

Motif matrix
POACGT
1709.59160.5871.61143.22
2598.92240.87167.0978.12
3205.065158.412.17719.355
4505.61180.11364.5634.72
5288.61747.56547.741.085
61022.0749.919.7653.255
752.0859.675107.415865.83
83.255817.0051.085263.655
986.8177.94683.55136.71
1020.615918.9951.085144.305

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
znf143#MA0088.1100.002681151.27623110AATACATCGCGATTTCCCATAATGCCTTGC+
Gata1#MA0035.1-30.005672362.7000416AATACATCGCCCATCC-
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