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MacroAPE 1083:8-GTTGTTKKGKT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.81;436.21;1017.22;354.76!2;1.81;287.79;1.81;1518.59!3;30.77;1.81;394.58;1382.84!4;50.68;1.81;1127.63;629.88!5;247.97;488.7;1.81;1071.52!6;...")
 
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;0.527156!10788-110H5;0.562613!10792-110H9;0.167411!10765-110E9;0.361421!10829-111D1;0.419277!10830-111D2;0.618878!10831-111D3;0.172189!10832-111D4;0.322947!10833-111D5;0.500812!10764-110E8;0.646232!10770-110F5;0.184492!10399-106A3;0.834159!10400-106A4;0.314509!10405-106A9;0.23803!10834-111D6;0.449085!10835-111D7;0.266768!10836-111D8;0.950242!10837-111D9;0.631943!10699-109G6;0.484356!10802-111A1;0.260231!10796-110I4;0.358138!10010-101C1;0.0987258!10810-111A9;0.216937!10421-106C7;0.545462!10708-109H6;0.878467!12235-129G3;0.19669!12236-129G4;0.400737!12237-129G5;0.239305!10167-103B5;0.536751!10151-102I7;0.875469!10428-106D5;0.669028!10795-110I3;0.228161!10805-111A4;0.727332!10052-101G7;0.839731!10189-103D9;0.255007!10589-108D4;0.846275!10425-106D2;0.172668!10427-106D4;0.311277!10702-109G9;0.71714!10432-106D9;0.901889!10496-107C1;0.801492!10718-109I7;0.188969!10011-101C2;0.483354!10053-101G8;0.142396!10686-109F2;0.453388!10084-102B3;0.362879!10012-101C3;0.872654!10085-102B4;0.84197!10482-107A5;0.759984!10419-106C5;0.997502!10080-102A8;0.559015!10760-110E4;0.168526!10709-109H7;0.407909!10710-109H8;0.178081!10703-109H1;0.852156!10719-109I8;0.753428!10642-109A3;0.187775!10177-103C6;0.640256!10164-103B2;0.779881!10173-103C2;0.455012!10166-103B4;0.566604!10083-102B2;0.460592!10188-103D8;0.554581!10552-107I3;0.705369!10553-107I4;0.497448!10013-101C4;0.690597!10536-107G5;0.253971!10618-108G6;0.0547562!10423-106C9;0.799592!10785-110H2;0.774958!12238-129G6;0.704534!12239-129G7;0.787292!12240-129G8;0.708566!10416-106C2;0.783964!10801-110I9;0.248265!10766-110F1;0.379341!10824-111C5;0.221164!10825-111C6;0.405243!10826-111C7;0.280132!10454-106G4;0.392602!10409-106B4;0.331686!10638-108I8;0.466788!10636-108I6;0.741728!10513-107D9;0.218319!10420-106C6;0.954495!10082-102B1;0.378117!10014-101C5;0.768234!10070-101I7;0.29209!10452-106G2;0.726152!10453-106G3;0.850124!10449-106F8;0.512229!10042-101F6;0.670299!10069-101I6;0.71783!10193-103E4;0.456796!10631-108I1;0.823793!10438-106E6;0.780769!10488-107B2;0.512405!10196-103E7;0.146724!10071-101I8;0.0587384!10071-101I8;0.712208!10041-101F5;0.604575!10451-106G1;0.978471!10450-106F9;0.300382!10604-108F1;0.558441!10605-108F2;0.92482!10606-108F3;0.385301!10603-108E9;0.920459!10497-107C2;0.656644!10448-106F7;0.35765!10643-109A4;0.431909!10426-106D3;0.714753!10431-106D8;0.93768!10197-103E8;0.62292!10443-106F2;0.152093!10815-111B5;0.622292!10816-111B6;0.725935!10817-111B7;0.672078!10015-101C6;0.620496!10410-106B5;0.459168!10054-101G9;0.592981!10758-110E2;0.928576!10711-109H9;0.835719!10040-101F4;0.965328!10470-106I2;0.958916!10415-106C1;0.957709!10198-103E9;0.274351!10614-108G2;0.832226!10612-108F9;0.431317!10549-107H9;0.629311!10615-108G3;0.722491!10487-107B1;0.0118145!10433-106E1;0.503854!10688-109F4;0.798759!10444-106F3;0.336998!10444-106F3;0.51572!10485-107A8;0.43981!10413-106B8;0.231937!10175-103C4;0.696076!10161-103A8;0.912343!12131-128D7;0.585102!10624-108H3;0.904377!10712-109I1;0.895912!10205-103F7;0.296837!10206-103F8;0.931625!10207-103F9;0.952475!10050-101G5;0.262755!10051-101G6;0.99742!10016-101C7;0.99432!10046-101G1;0.945116!10778-110G4;0.879634!10633-108I3;0.770805!10818-111B8;0.9205!10819-111B9;0.185473!10820-111C1;0.163316!10484-107A7;0.153788!10808-111A7;0.620746!10169-103B7;0.783321!10153-102I9;0.97775!13425-144D5;0.650596!13433-144E4;0.730148!13437-144E8;0.790906!11904-125F5;0.671516!11905-125F6;0.344718!10039-101F3;0.60247!10791-110H8;0.926087!10017-101C8;0.900657!10045-101F9;0.580811!10509-107D5;0.943722!10839-111E2;0.939328!10692-109F8;0.237015!10079-102A7;0.739029!10078-102A6;0.601487!10721-110A1;0.890592!10569-108B2;0.115271!10570-108B3;0.927336!10571-108B4;0.665075!10647-109A8;0.820259!10752-110D5;0.720022!10782-110G8;0.248013!10726-110A6;0.384852!10018-101C9;0.299463!10086-102B5;0.646531!10182-103D2;0.149015!10165-103B3;0.671484!10499-107C4;0.55365!10408-106B3;0.314176!10019-101D1;0.990321!10068-101I5;0.159691!10075-102A3;0.258955!10077-102A5;0.494014!10727-110A7;0.682763!10775-110G1;0.603061!10412-106B7;0.808946!12231-129F8;0.812554!12232-129F9;0.0172524!12233-129G1;0.0387628!12234-129G2;0.00867351!10414-106B9;0.0142398!10170-103B8;0.504452!10183-103D3;0.772815!10150-102I6;0.773603!10174-103C3;0.661314!10155-103A2;0.570877!10038-101F2;0.370224!10838-111E1;0.895764!10759-110E3;0.823153!10514-107E1;0.611297!10465-106H6;0.74108!10691-109F7;0.233467!10843-111E6;0.332511!10844-111E7;0.599693!11747-123G1;0.673331!11748-123G2;0.482472!11749-123G3;0.345531!11750-123G4;0.62381!11751-123G5;0.556073!11840-124H4;0.42707!11752-123G6;0.906089!11753-123G7;0.667324!11754-123G8;0.846946!11755-123G9;0.24846!11756-123H1;0.558218!11833-124G6;0.513406!11760-123H5;0.993298!11836-124G9;0.34191!11758-123H3;0.441694!11835-124G8;0.7395!11762-123H7;0.821296!11838-124H2;0.837441!11757-123H2;0.775608!11759-123H4;0.377086!11761-123H6;0.322771!11842-124H6;0.941438!11837-124H1;0.492851!10568-108B1;0.895737!13230-141I8;0.891402!13231-141I9;0.351787!10696-109G3;0.350121!10493-107B7;0.485672!10494-107B8;0.115247!10850-111F4;0.908803!10851-111F5;0.259613!10852-111F6;0.309003!10853-111F7;0.51239!10854-111F8;0.770638!10855-111F9;0.733848!10856-111G1;0.716569!10847-111F1;0.72393!10846-111E9;0.870274!10848-111F2;0.278663!10845-111E8;0.581481!10857-111G2;0.293188!10858-111G3;0.468119!10156-103A3;0.940567!11901-125F2;0.713316!11902-125F3;0.660885!11903-125F4;0.394862!10689-109F5;0.425423!10648-109A9;0.106201!10784-110H1;0.647986!10744-110C6;0.437552!10772-110F7;0.263842!10474-106I6;0.411207!10600-108E6;0.87312!10684-109E9;0.152516!12226-129F3;0.718395!12227-129F4;0.339379!10508-107D4;0.106154!10539-107G8;0.788751!10607-108F4;0.382751!10555-107I6;0.167489!10774-110F9;0.693724!10637-108I7;0.517268!10663-109C6;0.418431!10728-110A8;0.14074!10729-110A9;0.885861!10430-106D7;0.185335!10730-110B1;0.735371!10813-111B3;0.251664!10812-111B2;0.841241!10037-101F1;0.47242!10172-103C1;0.863807!10163-103B1;0.895441!10076-102A4;0.608864!10073-102A1;0.911393!10036-101E9;0.700347!10195-103E6;0.942084!10277-104E7;0.692778!10434-106E2;0.92019!10550-107I1;0.209474!10545-107H5;0.627408!10544-107H4;0.679107!10704-109H2;0.992526!10510-107D6;0.196502!10558-107I9;0.638912!10020-101D2;0.668921!10732-110B3;0.182972!10049-101G4;0.960459!10698-109G5;0.989966!10437-106E5;0.71754!10417-106C3;0.0895891!10035-101E8;0.331056!10171-103B9;0.987033!10157-103A4;0.905885!10034-101E7;0.726965!10072-101I9;0.993595!10199-103F1;0.763362!10200-103F2;0.660929!10697-109G4;0.202583!10723-110A3;0.277326!10179-103C8;0.784509!10160-103A7;0.925786!10180-103C9;0.659672!10162-103A9;0.0738978!10021-101D3;0.101406!10840-111E3;0.187308!10706-109H4;0.933572!10033-101E6;0.0534547!10032-101E5;0.977782!10490-107B4;0.97888!10439-106E7;0.119183!10022-101D4;0.869217!10176-103C5;0.057524!10469-106I1;0.511926!10067-101I4;0.630916!10411-106B6;0.993483!10471-106I3;0.59244!10030-101E3;0.528548!10475-106I7;0.661049!10787-110H4;0.954378!10477-106I9;0.345012!10695-109G2;0.488861!11771-123I7;0.93873!11772-123I8;0.983293!11773-123I9;0.416075!10093-102C3;0.555092!10442-106F1;0.229979!10442-106F1;0.728623!10201-103F3;0.838069!10639-108I9;0.0917022!11843-124H7;0.0556669!11841-124H5;0.381278!10693-109F9;0.64325!10436-106E4;0.159148!10483-107A6;0.545526!10282-104F3;0.544845!10023-101D5;0.230842!10066-101I3;0.0740342!10065-101I2;0.987173!10800-110I8;0.800163!10610-108F7;0.378528!10841-111E4;0.113942!10541-107H1;0.455611!10842-111E5;0.779019!10562-108A4;0.770489!10024-101D6;0.555254!10064-101I1;0.493903!10609-108F6;0.587654!10048-101G3;0.000372751!10781-110G7;0.0584529!10181-103D1;0.542979!10159-103A6;0.950049!10056-101H2;0.648573!10737-110B8;0.983662!10025-101D7;0.704954!10044-101F8;0.741266!10424-106D1;0.813589!10463-106H4;0.752073!10616-108G4;0.489773!10486-107A9;0.92962!10062-101H8;0.230647!10202-103F4;0.149097!10158-103A5;0.369931!10441-106E9;0.482766!10031-101E4;0.276466!10063-101H9;0.883421!10063-101H9;0.538915!11763-123H8;0.817887!11765-123I1;0.992329!11768-123I4;0.606678!10807-111A6;0.764522!10790-110H7;0.556462!10798-110I6;0.428568!10786-110H3;0.699008!10591-108D6;0.562899!10593-108D8;0.799755!10590-108D5;0.446735!10026-101D8;0.515014!10096-102C6;0.0192381!10168-103B6;0.0222578!10154-103A1;0.910874!10209-103G2;0.413657!10061-101H7;0.566628!10027-101D9;0.998166!10043-101F7;0.462473!10783-110G9;0.119113!10028-101E1;0.847346!10060-101H6;0.346645!10203-103F5;0.772721!10059-101H5;0.490179!10047-101G2;0.599315!10029-101E2;0.360409!10058-101H4;0.246449!10418-106C4;0.887216!10492-107B6;0.761849!10694-109G1;0.815887!10797-110I5;0.597662!10057-101H3;0.247741!10100-102D1;0.907898!10055-101H1;0.389774!10204-103F6;0.7189!10191-103E2;0.0119533!10563-108A5;0.256405
|name=8-GTTGTTKKGKT,CNhs11999,BestGuess:BPTF_si_HM09(0.718215445524004),T:1810.0(47.21%),B:15513.2(35.67%),P:1e-48
|name=8-GTTGTTKKGKT,CNhs11999,BestGuess:BPTF_si_HM09(0.718215445524004),T:1810.0(47.21%),B:15513.2(35.67%),P:1e-48
|tomtom_result=hb#MA0049.1;0;0.000593089;0.28231;0.564621;10;GTTGTTTTGGT;TTTTTTATGC;-!NDT80#MA0343.1;4;0.00217874;1.03708;1;11;GTTGTTTTGGT;TTGCGTTTTTGTGGCCGGAAA;-!Sox2#MA0143.1;2;0.00731771;3.48323;1;11;GTTGTTTTGGT;CCTTTGTTATGCAAA;+!RREB1#MA0073.1;9;0.00750013;3.57006;1;11;GTTGTTTTGGT;TGGGGGGGGGTGGTTTGGGG;-!HCM1#MA0317.1;-1;0.00837358;3.98583;1;8;GTTGTTTTGGT;TTGTTTAT;-!Pax4#MA0068.1;11;0.00908156;4.32282;1;11;GTTGTTTTGGT;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!FOXI1#MA0042.1;1;0.00983304;4.68053;1;11;GTTGTTTTGGT;GGATGTTTGTTT;+!Sox5#MA0087.1;0;0.0121144;5.76646;1;7;GTTGTTTTGGT;ATTGTTA;-!slp1#MA0458.1;0;0.0164949;7.85159;1;11;GTTGTTTTGGT;TTGTTTACATT;+!BRCA1#MA0133.1;2;0.0178012;8.47337;1;5;GTTGTTTTGGT;GTGTTGT;-!SFP1#MA0378.1;11;0.0185272;8.81895;1;10;GTTGTTTTGGT;ATTGAAAAAAATTTTCTACGG;+!mirr#MA0233.1;-2;0.0194883;9.27642;1;5;GTTGTTTTGGT;TGTTT;-!HAP4#MA0315.1;5;0.020295;9.6604;1;10;GTTGTTTTGGT;TCGCCTCTGATTGGT;-
}}
}}

Latest revision as of 14:53, 7 September 2012

Full Name: 8-GTTGTTKKGKT,CNhs11999,BestGuess:BPTF_si_HM09(0.718215445524004),T:1810.0(47.21%),B:15513.2(35.67%),P:1e-48

Motif matrix
POACGT
11.81436.211017.22354.76
21.81287.791.811518.59
330.771.81394.581382.84
450.681.811127.63629.88
5247.97488.71.811071.52
61.81175.5732.581600.04
7472.411.81581.01752.96
81.81242.54767.44800.02
91.811.811417.23389.15
101.81439.83716.76653.41
11347.52454.31181.0827.17

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
hb#MA0049.100.0005930890.282310.56462110GTTGTTTTGGTTTTTTTATGC-
NDT80#MA0343.140.002178741.03708111GTTGTTTTGGTTTGCGTTTTTGTGGCCGGAAA-
Sox2#MA0143.120.007317713.48323111GTTGTTTTGGTCCTTTGTTATGCAAA+
RREB1#MA0073.190.007500133.57006111GTTGTTTTGGTTGGGGGGGGGTGGTTTGGGG-
HCM1#MA0317.1-10.008373583.9858318GTTGTTTTGGTTTGTTTAT-
Pax4#MA0068.1110.009081564.32282111GTTGTTTTGGTGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
FOXI1#MA0042.110.009833044.68053111GTTGTTTTGGTGGATGTTTGTTT+
Sox5#MA0087.100.01211445.7664617GTTGTTTTGGTATTGTTA-
slp1#MA0458.100.01649497.85159111GTTGTTTTGGTTTGTTTACATT+
BRCA1#MA0133.120.01780128.4733715GTTGTTTTGGTGTGTTGT-
SFP1#MA0378.1110.01852728.81895110GTTGTTTTGGTATTGAAAAAAATTTTCTACGG+
mirr#MA0233.1-20.01948839.2764215GTTGTTTTGGTTGTTT-
HAP4#MA0315.150.0202959.6604110GTTGTTTTGGTTCGCCTCTGATTGGT-
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