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MCL coexpression mm9:598: Difference between revisions

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|ontology_enrichment_uberon=
|ontology_enrichment_uberon=
|tfbs_overrepresentation_for_novel_motifs=0.267173,0.2332,0.245304,0.818969,0.474017,0.315748,0.396495,0.303924,0.0967611,0.169674,0.357058,0.385627,0.0909495,0.407615,0.169024,0,0.587245,0.459418,0.0817508,0.0359435,0.616152,0.0948826,0.406794,0.917766,0.701128,0.432737,0.265362,0.888376,1.06341,0.198166,0.321757,0.683831,0.455295,0.234079,0.169391,0.056009,0.142225,0.382372,1.29377,0.107198,0.910079,0.326286,1.36726,0.508662,0.283915,0.293566,0.512146,0.34807,1.19261,0.19345,0.570705,0.457464,0.187938,0.82076,0.837732,0.414119,0.581069,0.37415,0.0716833,0.412262,0.664611,0.46618,0.340458,0.560059,0.424276,0.598412,0.970969,1.3158,1.58703,1.17005,0.229771,0.313987,0.0239269,0.870406,0.0680008,0.222652,0.233965,0.50152,0.648171,0.218647,0.651601,0.60374,0.464847,0.293128,0.758319,0.00596121,5.2269,0.053731,0.516731,1.47691,1.03946,0.763136,0.696137,0.940863,0.12392,0.360425,1.54444,0.698838,0.512384,0.379245,1.39077,0.683562,0.803823,0.571268,0.57027,0.3259,0.627019,0.911463,0.222586,0.216685,0.261228,0.805555,1.17452,0.361667,1.04639,0.904538,0.278854,0.826326,0.58848,0.43155,0.875675,0.540309,0.434408,0.500675,1.09972,0.651709,0.403884,0.689622,0.969481,0.163147,0.787341,1.46242,0.940498,0.426575,1.06766,0.716348,0.753345,0.873625,1.01927,1.84381,1.44523,0.975592,0.445463,0.693891,0.564145,0.326684,0.515065,1.80426,0.276297,0.157809,0.0549354,0.0183397,0.822286,0.747142,0.425729,0.901933,0.458393,1.6032,2.07283,0.274055,1.02862,1.78909,0.652135,2.04307,2.36132,1.88931,0.436256,0.384198,0.00224839
|tfbs_overrepresentation_for_novel_motifs=0.267173,0.2332,0.245304,0.818969,0.474017,0.315748,0.396495,0.303924,0.0967611,0.169674,0.357058,0.385627,0.0909495,0.407615,0.169024,0,0.587245,0.459418,0.0817508,0.0359435,0.616152,0.0948826,0.406794,0.917766,0.701128,0.432737,0.265362,0.888376,1.06341,0.198166,0.321757,0.683831,0.455295,0.234079,0.169391,0.056009,0.142225,0.382372,1.29377,0.107198,0.910079,0.326286,1.36726,0.508662,0.283915,0.293566,0.512146,0.34807,1.19261,0.19345,0.570705,0.457464,0.187938,0.82076,0.837732,0.414119,0.581069,0.37415,0.0716833,0.412262,0.664611,0.46618,0.340458,0.560059,0.424276,0.598412,0.970969,1.3158,1.58703,1.17005,0.229771,0.313987,0.0239269,0.870406,0.0680008,0.222652,0.233965,0.50152,0.648171,0.218647,0.651601,0.60374,0.464847,0.293128,0.758319,0.00596121,5.2269,0.053731,0.516731,1.47691,1.03946,0.763136,0.696137,0.940863,0.12392,0.360425,1.54444,0.698838,0.512384,0.379245,1.39077,0.683562,0.803823,0.571268,0.57027,0.3259,0.627019,0.911463,0.222586,0.216685,0.261228,0.805555,1.17452,0.361667,1.04639,0.904538,0.278854,0.826326,0.58848,0.43155,0.875675,0.540309,0.434408,0.500675,1.09972,0.651709,0.403884,0.689622,0.969481,0.163147,0.787341,1.46242,0.940498,0.426575,1.06766,0.716348,0.753345,0.873625,1.01927,1.84381,1.44523,0.975592,0.445463,0.693891,0.564145,0.326684,0.515065,1.80426,0.276297,0.157809,0.0549354,0.0183397,0.822286,0.747142,0.425729,0.901933,0.458393,1.6032,2.07283,0.274055,1.02862,1.78909,0.652135,2.04307,2.36132,1.88931,0.436256,0.384198,0.00224839
|tfbs_overrepresentation_jaspar=MA0003.1;0.000213286,MA0004.1;0.303605,MA0006.1;2.18842,MA0007.1;0.290695,MA0009.1;1.68923,MA0014.1;0.0136923,MA0017.1;0.546298,MA0019.1;1.3254,MA0024.1;0.667197,MA0025.1;0.936082,MA0027.1;2.34178,MA0028.1;0.173587,MA0029.1;0.64639,MA0030.1;0.65267,MA0031.1;0.618697,MA0038.1;1.1047,MA0040.1;0.721328,MA0041.1;0.239557,MA0042.1;0.228771,MA0043.1;0.802848,MA0046.1;0.743934,MA0048.1;0.680396,MA0050.1;1.60735,MA0051.1;1.12244,MA0052.1;0.729105,MA0055.1;0.00695701,MA0056.1;0,MA0057.1;0.630087,MA0058.1;0.223242,MA0059.1;0.658541,MA0060.1;0.108526,MA0061.1;1.89666,MA0063.1;0,MA0066.1;0.422624,MA0067.1;1.04514,MA0068.1;0.157638,MA0069.1;0.729433,MA0070.1;0.720077,MA0071.1;0.336739,MA0072.1;0.711905,MA0073.1;1.08169,MA0074.1;0.390075,MA0076.1;0.200996,MA0077.1;0.691048,MA0078.1;0.471303,MA0081.1;0.702944,MA0083.1;0.802078,MA0084.1;1.3693,MA0087.1;0.760279,MA0088.1;0.0227266,MA0089.1;0,MA0090.1;0.27428,MA0091.1;0.845572,MA0092.1;0.753925,MA0093.1;0.179936,MA0095.1;0,MA0098.1;0,MA0100.1;0.379666,MA0101.1;1.94536,MA0103.1;0.19444,MA0105.1;0.491577,MA0106.1;0.478503,MA0107.1;2.3671,MA0108.2;0.557195,MA0109.1;0,MA0111.1;0.286331,MA0113.1;0.452439,MA0114.1;0.127366,MA0115.1;0.805567,MA0116.1;0.165534,MA0117.1;0.774259,MA0119.1;0.241106,MA0122.1;0.793507,MA0124.1;0.992825,MA0125.1;0.920215,MA0130.1;0,MA0131.1;0.531427,MA0132.1;0,MA0133.1;0,MA0135.1;0.838263,MA0136.1;1.05128,MA0139.1;0.0883913,MA0140.1;0.379562,MA0141.1;0.210047,MA0142.1;0.604892,MA0143.1;0.467531,MA0144.1;0.406018,MA0145.1;0.0257706,MA0146.1;0.00325174,MA0147.1;0.428193,MA0148.1;0.851609,MA0149.1;0.245177,MA0062.2;0.0662974,MA0035.2;0.998181,MA0039.2;5.27017e-05,MA0138.2;1.30053,MA0002.2;0.0901987,MA0137.2;0.207733,MA0104.2;0.326825,MA0047.2;1.10318,MA0112.2;0.264932,MA0065.2;0.0259098,MA0150.1;0.290598,MA0151.1;0,MA0152.1;0.432062,MA0153.1;0.854464,MA0154.1;0.16541,MA0155.1;0.0312913,MA0156.1;0.580656,MA0157.1;1.40745,MA0158.1;0,MA0159.1;0.145521,MA0160.1;0.320315,MA0161.1;0,MA0162.1;0.0785995,MA0163.1;0.00375714,MA0164.1;1.052,MA0080.2;1.67191,MA0018.2;0.417217,MA0099.2;0.518072,MA0079.2;2.94469e-06,MA0102.2;1.42135,MA0258.1;0.376353,MA0259.1;0.408856,MA0442.1;0
}}
}}

Revision as of 12:00, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:114909642..114909685,-p1@Cd300lh
p1@Gm11711
Mm9::chr11:114909686..114909713,-p2@Cd300lh
Mm9::chr11:81928682..81928688,+p1@Ccl8
p1@LOC100503254
Mm9::chr12:3357012..3357026,-p1@ENSMUST00000171149
Mm9::chr15:5446195..5446218,+p1@uc007vda.1
p1@uc011zra.1
Mm9::chr15:6519452..6519459,+p@chr15:6519452..6519459
+
Mm9::chr15:6519481..6519497,+p@chr15:6519481..6519497
+
Mm9::chr15:6519499..6519515,+p@chr15:6519499..6519515
+
Mm9::chr1:175671926..175671948,-p3@AI607873
Mm9::chr3:58957411..58957423,-p6@P2ry14
Mm9::chr5:105987878..105987910,+p9@Lrrc8c
Mm9::chr6:97381396..97381447,-p4@Frmd4b


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000213286
MA0004.10.303605
MA0006.12.18842
MA0007.10.290695
MA0009.11.68923
MA0014.10.0136923
MA0017.10.546298
MA0019.11.3254
MA0024.10.667197
MA0025.10.936082
MA0027.12.34178
MA0028.10.173587
MA0029.10.64639
MA0030.10.65267
MA0031.10.618697
MA0038.11.1047
MA0040.10.721328
MA0041.10.239557
MA0042.10.228771
MA0043.10.802848
MA0046.10.743934
MA0048.10.680396
MA0050.11.60735
MA0051.11.12244
MA0052.10.729105
MA0055.10.00695701
MA0056.10
MA0057.10.630087
MA0058.10.223242
MA0059.10.658541
MA0060.10.108526
MA0061.11.89666
MA0063.10
MA0066.10.422624
MA0067.11.04514
MA0068.10.157638
MA0069.10.729433
MA0070.10.720077
MA0071.10.336739
MA0072.10.711905
MA0073.11.08169
MA0074.10.390075
MA0076.10.200996
MA0077.10.691048
MA0078.10.471303
MA0081.10.702944
MA0083.10.802078
MA0084.11.3693
MA0087.10.760279
MA0088.10.0227266
MA0089.10
MA0090.10.27428
MA0091.10.845572
MA0092.10.753925
MA0093.10.179936
MA0095.10
MA0098.10
MA0100.10.379666
MA0101.11.94536
MA0103.10.19444
MA0105.10.491577
MA0106.10.478503
MA0107.12.3671
MA0108.20.557195
MA0109.10
MA0111.10.286331
MA0113.10.452439
MA0114.10.127366
MA0115.10.805567
MA0116.10.165534
MA0117.10.774259
MA0119.10.241106
MA0122.10.793507
MA0124.10.992825
MA0125.10.920215
MA0130.10
MA0131.10.531427
MA0132.10
MA0133.10
MA0135.10.838263
MA0136.11.05128
MA0139.10.0883913
MA0140.10.379562
MA0141.10.210047
MA0142.10.604892
MA0143.10.467531
MA0144.10.406018
MA0145.10.0257706
MA0146.10.00325174
MA0147.10.428193
MA0148.10.851609
MA0149.10.245177
MA0062.20.0662974
MA0035.20.998181
MA0039.25.27017e-05
MA0138.21.30053
MA0002.20.0901987
MA0137.20.207733
MA0104.20.326825
MA0047.21.10318
MA0112.20.264932
MA0065.20.0259098
MA0150.10.290598
MA0151.10
MA0152.10.432062
MA0153.10.854464
MA0154.10.16541
MA0155.10.0312913
MA0156.10.580656
MA0157.11.40745
MA0158.10
MA0159.10.145521
MA0160.10.320315
MA0161.10
MA0162.10.0785995
MA0163.10.00375714
MA0164.11.052
MA0080.21.67191
MA0018.20.417217
MA0099.20.518072
MA0079.22.94469e-06
MA0102.21.42135
MA0258.10.376353
MA0259.10.408856
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:598&oldid=2573993"