FFCP PHASE1:Hg19::chr11:35253300..35253312,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C620|description=CAGE_peak_at_chr11:35253300..35253312,+|id=chr11:35253300..35253312,+|ontology_enrichment_celltype=CL:0002057!1.15e-17!42;CL:0000860!1.72e-16!45;CL:0002009!3.27e-16!65;CL:0002371!6.09e-16!591;CL:0002194!2.79e-15!63;CL:0000576!2.79e-15!63;CL:0000040!2.79e-15!63;CL:0000559!2.79e-15!63;CL:0000557!4.59e-15!71;CL:0000048!1.05e-14!430;CL:0000723!2.43e-14!436;CL:0000766!2.69e-14!76;CL:0000003!3.12e-14!722;CL:0000144!9.49e-14!625;CL:0000839!1.44e-13!70;CL:0000034!4.56e-13!444;CL:0000012!1.08e-11!682;CL:0000548!1.14e-11!679;CL:0000004!1.14e-11!679;CL:0000255!1.14e-11!679;CL:0000134!1.17e-10!358;CL:0002320!1.39e-10!365;CL:0000219!1.64e-10!390;CL:0000055!1.24e-08!180;CL:0000763!5.40e-07!112;CL:0000049!5.40e-07!112;CL:0002031!8.07e-07!124|ontology_enrichment_celltype_v019=CL:0000860;7.73e-24;33!CL:0002057;7.73e-24;33!CL:0000473;2.61e-20;39!CL:0000234;2.61e-20;39!CL:0000576;2.95e-12;48!CL:0000766;6.84e-09;69!CL:0000359;1.94e-07;32|ontology_enrichment_celltype_v019_2=CL:0000473,3.31e-24,48;CL:0000234,3.31e-24,48;CL:0000860,2.13e-23,42;CL:0002057,2.13e-23,42;CL:0002009,4.23e-23,61;CL:0002194,1.28e-21,59;CL:0000576,1.28e-21,59;CL:0000040,1.28e-21,59;CL:0000559,1.28e-21,59;CL:0000557,1.76e-20,67;CL:0000766,4.44e-19,72;CL:0000839,1.43e-18,66;CL:0000048,2.06e-16,427;CL:0000723,1.38e-15,433;CL:0000034,1.59e-14,441;CL:0000219,2.05e-12,386;CL:0000134,2.33e-12,354;CL:0002320,7.10e-12,361;CL:0000763,3.79e-10,108;CL:0000049,3.79e-10,108;CL:0002031,2.53e-08,120;CL:0002087,1.13e-07,115;CL:0000359,1.35e-07,32;CL:0000738,2.90e-07,136|ontology_enrichment_development_v019=CL:0002057;1.71e-17;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:2394,9.00e-07,14|ontology_enrichment_uberon=UBERON:0002204!4.90e-16!167;UBERON:0002371!2.92e-14!80;UBERON:0001474!5.86e-12!86;UBERON:0004765!3.25e-11!101;UBERON:0001434!3.25e-11!101;UBERON:0002384!3.66e-10!375;UBERON:0002390!7.96e-09!102;UBERON:0003061!7.96e-09!102|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.54e-19,76;UBERON:0002204,6.24e-18,167;UBERON:0001474,1.92e-17,82;UBERON:0004765,6.27e-16,90;UBERON:0001434,1.35e-14,100;UBERON:0002405,8.75e-13,93;UBERON:0002390,5.65e-12,98;UBERON:0003061,5.65e-12,98;UBERON:0002384,2.04e-11,371;UBERON:0000926,2.84e-10,315;UBERON:0004120,2.84e-10,315;UBERON:0006603,2.84e-10,315;UBERON:0003081,2.94e-10,203;UBERON:0002193,1.56e-09,108|phase1_expression=0.726713517082227,0.642301571672949,0.563817616383885,2.00146596706261,0.446961094427288,2.61701557230111,0,0,2.08948502559871,1.22866968250754,0,0.218441372130172,0,0.495065411840187,1.32558950291166,2.6893005858071,4.21886169616784,1.46062018077475,4.39139518911456,0.61560529038394,0.408001382488506,0.940364164434263,0.572471974262113,1.91624195102038,1.50651167513763,0,0.410502947249729,0,0.393364276848904,0.767658796194425,1.08371286321253,1.83884244895785,0,1.10926203050036,0,0,0,1.10799081706375,1.00272223735071,1.08505435357926,0.447830948479849,0,0.257575567634187,2.4717700592526,1.13362783106643,2.66842467306598,3.71886459049095,2.05583944010913,2.16794459626573,2.58923153089935,2.30544635876191,3.54723344832878,6.55016793399575,3.22742341791913,2.70852973188684,4.70605848856512,1.09162460023138,4.49446968890169,3.97909060082173,1.92557416245656,5.75403413219137,1.9791078011203,1.99463657621632,3.83602275479425,5.80418477257168,4.53908179752912,5.60540024096017,3.26623264833766,5.21482918420201,3.25783267057675,6.05399502633369,4.41933163185078,9.49387162322653,0.845021145247767,0.425208599930087,0.628975936525128,0.44931452458598,1.50176892841506,0.16072558669708,0,0.99458338599545,2.00930569141097,0,0.546138611262131,0,0,0.400395987036012,0,0,0,1.1384259382189,1.17447437874188,0.382273228125229,0,0.560508562981536,0.526768169550154,0,1.17903228824749,1.02800749499755,0.501559486172034,0.32592226663359,0.473447805734733,1.94826728407911,0.557052284425868,0.589211814949674,1.10766947291811,0.270803863765016,1.28091319725675,1.1705341280389,2.13769275984779,1.10540007114339,0.579606171470105,0.741432815810302,0.535081656179426,1.04535523804977,0.226618685395132,0.383220493601921,1.71813722741315,0.506039384039006,0.318565414324097,0,0,0.301150238155546,0.511946444617674,0,0.710331756132051,0,0.604820229674197,1.87208137048455,1.01377082717959,0,0,0.12786256184353,1.80719576192283,3.00802746381534,2.60723734129483,0.795285947051099,1.94653948121054,0.378139268656271,0.665188192387692,0.351339142772504,0.0654895377488563,0,1.11235332835329,3.57002133020152,1.91542711029194,5.31831842075461,0,0.571994910780128,0,0,0,0,0,0.419499436209906,0,0.626984899610432,0,0.35576626268671,0,0,0,0,0.367663080345869,0.81014194788176,0.0892997282840798,0,0,0,0,0.366403487860815,0,0,0,0,1.2663051166458,0.662045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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C620 | |||
|description=CAGE_peak_at_chr11:35253300..35253312,+ | |||
|id=chr11:35253300..35253312,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.15e-17!42;CL:0000860!1.72e-16!45;CL:0002009!3.27e-16!65;CL:0002371!6.09e-16!591;CL:0002194!2.79e-15!63;CL:0000576!2.79e-15!63;CL:0000040!2.79e-15!63;CL:0000559!2.79e-15!63;CL:0000557!4.59e-15!71;CL:0000048!1.05e-14!430;CL:0000723!2.43e-14!436;CL:0000766!2.69e-14!76;CL:0000003!3.12e-14!722;CL:0000144!9.49e-14!625;CL:0000839!1.44e-13!70;CL:0000034!4.56e-13!444;CL:0000012!1.08e-11!682;CL:0000548!1.14e-11!679;CL:0000004!1.14e-11!679;CL:0000255!1.14e-11!679;CL:0000134!1.17e-10!358;CL:0002320!1.39e-10!365;CL:0000219!1.64e-10!390;CL:0000055!1.24e-08!180;CL:0000763!5.40e-07!112;CL:0000049!5.40e-07!112;CL:0002031!8.07e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.73e-24;33!CL:0002057;7.73e-24;33!CL:0000473;2.61e-20;39!CL:0000234;2.61e-20;39!CL:0000576;2.95e-12;48!CL:0000766;6.84e-09;69!CL:0000359;1.94e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.31e-24,48;CL:0000234,3.31e-24,48;CL:0000860,2.13e-23,42;CL:0002057,2.13e-23,42;CL:0002009,4.23e-23,61;CL:0002194,1.28e-21,59;CL:0000576,1.28e-21,59;CL:0000040,1.28e-21,59;CL:0000559,1.28e-21,59;CL:0000557,1.76e-20,67;CL:0000766,4.44e-19,72;CL:0000839,1.43e-18,66;CL:0000048,2.06e-16,427;CL:0000723,1.38e-15,433;CL:0000034,1.59e-14,441;CL:0000219,2.05e-12,386;CL:0000134,2.33e-12,354;CL:0002320,7.10e-12,361;CL:0000763,3.79e-10,108;CL:0000049,3.79e-10,108;CL:0002031,2.53e-08,120;CL:0002087,1.13e-07,115;CL:0000359,1.35e-07,32;CL:0000738,2.90e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;1.71e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.00e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!4.90e-16!167;UBERON:0002371!2.92e-14!80;UBERON:0001474!5.86e-12!86;UBERON:0004765!3.25e-11!101;UBERON:0001434!3.25e-11!101;UBERON:0002384!3.66e-10!375;UBERON:0002390!7.96e-09!102;UBERON:0003061!7.96e-09!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.54e-19,76;UBERON:0002204,6.24e-18,167;UBERON:0001474,1.92e-17,82;UBERON:0004765,6.27e-16,90;UBERON:0001434,1.35e-14,100;UBERON:0002405,8.75e-13,93;UBERON:0002390,5.65e-12,98;UBERON:0003061,5.65e-12,98;UBERON:0002384,2.04e-11,371;UBERON:0000926,2.84e-10,315;UBERON:0004120,2.84e-10,315;UBERON:0006603,2.84e-10,315;UBERON:0003081,2.94e-10,203;UBERON:0002193,1.56e-09,108 | |||
|phase1_expression=0.726713517082227,0.642301571672949,0.563817616383885,2.00146596706261,0.446961094427288,2.61701557230111,0,0,2.08948502559871,1.22866968250754,0,0.218441372130172,0,0.495065411840187,1.32558950291166,2.6893005858071,4.21886169616784,1.46062018077475,4.39139518911456,0.61560529038394,0.408001382488506,0.940364164434263,0.572471974262113,1.91624195102038,1.50651167513763,0,0.410502947249729,0,0.393364276848904,0.767658796194425,1.08371286321253,1.83884244895785,0,1.10926203050036,0,0,0,1.10799081706375,1.00272223735071,1.08505435357926,0.447830948479849,0,0.257575567634187,2.4717700592526,1.13362783106643,2.66842467306598,3.71886459049095,2.05583944010913,2.16794459626573,2.58923153089935,2.30544635876191,3.54723344832878,6.55016793399575,3.22742341791913,2.70852973188684,4.70605848856512,1.09162460023138,4.49446968890169,3.97909060082173,1.92557416245656,5.75403413219137,1.9791078011203,1.99463657621632,3.83602275479425,5.80418477257168,4.53908179752912,5.60540024096017,3.26623264833766,5.21482918420201,3.25783267057675,6.05399502633369,4.41933163185078,9.49387162322653,0.845021145247767,0.425208599930087,0.628975936525128,0.44931452458598,1.50176892841506,0.16072558669708,0,0.99458338599545,2.00930569141097,0,0.546138611262131,0,0,0.400395987036012,0,0,0,1.1384259382189,1.17447437874188,0.382273228125229,0,0.560508562981536,0.526768169550154,0,1.17903228824749,1.02800749499755,0.501559486172034,0.32592226663359,0.473447805734733,1.94826728407911,0.557052284425868,0.589211814949674,1.10766947291811,0.270803863765016,1.28091319725675,1.1705341280389,2.13769275984779,1.10540007114339,0.579606171470105,0.741432815810302,0.535081656179426,1.04535523804977,0.226618685395132,0.383220493601921,1.71813722741315,0.506039384039006,0.318565414324097,0,0,0.301150238155546,0.511946444617674,0,0.710331756132051,0,0.604820229674197,1.87208137048455,1.01377082717959,0,0,0.12786256184353,1.80719576192283,3.00802746381534,2.60723734129483,0.795285947051099,1.94653948121054,0.378139268656271,0.665188192387692,0.351339142772504,0.0654895377488563,0,1.11235332835329,3.57002133020152,1.91542711029194,5.31831842075461,0,0.571994910780128,0,0,0,0,0,0.419499436209906,0,0.626984899610432,0,0.35576626268671,0,0,0,0,0.367663080345869,0.81014194788176,0.0892997282840798,0,0,0,0,0.366403487860815,0,0,0,0,1.2663051166458,0.662045904066094,4.87622255272983,0.709336764396714,0,0,0.24666754841716,0,1.0776853765575,0.163461903113459,0,0,0.468642863667593,1.24864030732128,0,2.09228152772521,0.469737994575059,0.485618833104395,0.140450806702248,0,0.245668634623536,0.413303124703062,1.18800285728205,1.23633464639278,0,0,0.336672227908132,0.375355559615893,0.277064115484183,0,0.30648779579902,0.150238058906597,0.567160915800105,4.48474089222155,1.92201649936711,1.27159140695737,8.70264178644767,0.721367704669072,2.31876486041066,0.930584281657949,2.02531598689519,0.584622030967192,0.757301322732344,0.736399189138395,0.80823028409406,3.90510551768276,1.0075209822764,1.18692414617341,1.35282597214308,2.72746120590835,1.14721838155602,0,0,0,0,0,0,1.56449532329816,3.85944562915731,0,3.71494342425583,3.60939740834793,0.473227200159376,0.505754070234305,0.964044119533928,0.220587945464788,0.217879444092406,0.237270619111097,0.808987848960987,0.196221465125346,1.15424147083917,0,0,0.4115740113314,1.47008711385542,0,0,0,0.441463099414651,0.122988438543114,1.02940686179115,0.768251997860379,0,0.804231779293047,0.555530670951178,0,0,2.88662684050547,0.695582429850461,0.234817388471643,0,0,0,0.790204397959275,0,0.984868024349589,1.63802985597466,1.33768046059855,0,0.671928512795438,1.13420077793909,0.626909658919938,0.581267877027924,0.766765358330422,0,0.528290604079356,0.621984346622316,1.00883967391873,0.50496973370552,0.952468414382536,0.763976851116555,0,3.4214489204541,2.67351481028641,3.00343057843917,1.14330573052231,0,0.43596006883328,0.07333828582095,1.03417372606222,0,1.690605505112,1.86156681609409,2.08014873822732,0,0,0.266422179016099,1.00084595560703,0,0,0.65147236858747,0.355391948742546,2.37585561880029,2.1100756394171,0,1.49959486773086,2.43247561282381,1.50677127429638,0,0.958499421966331,0,0,1.73737568001095,1.64381058040307,1.43248770591916,0.112085143993527,0.591092280605782,0.646882724578552,0.898401253958239,0,0,1.54657762555539,0.502548796003046,1.27587750330633,3.74503511973591,5.9832291840805,0,0.36807447515742,0,0.813795071099207,1.03985430765404,1.60586089917446,1.89242898040722,0.937131319941706,0.601892199455438,0,0,1.32845119707087,1.10621501125022,1.73767228936166,0.195801157462741,0,0,0.215714200818617,0.320182673410333,0,0,0.30239029332968,0.248107807818777,0.460385919864187,0.841980283299221,0.768834895534206,2.04682899626681,0.804269605718038,0,1.23367755042124,1.42049380250502,0.410635780069046,0.519254429183621,1.04589340613963,0.120859449591622,2.40607764363942,0.184161977871793,2.41110341145674,2.00300284807389,1.44236856455367,0,0.539107359730903,0,0,0.422206515571503,0,0,0.863663664408557,0,0,0,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0,0,0.126698501011437,0,0,0,0,0,0,0,0.103432995861895,0,0,0.0645889098360061,0,0.33639558774184,0.318235791390825,0.202117188958219,0.217716747896961,0,0.134704106029175,0.286888821570705,0.665320713092027,0,0.320182037633146,1.9307228228694,0.179650404213174,0,0.122241444182866,0.406896178315738,0,0.805095174364105,0 | |||
|short_description=p@chr11:35253300..35253312,+ | |||
}} |
Revision as of 17:38, 10 September 2013
Short description: | p@chr11:35253300..35253312, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:35253300..35253312, + |
Coexpression cluster: | C620_CD14_Smooth_Fibroblast_Mast_signet_normal_meningioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.31e-24 | 48 |
phagocyte | 3.31e-24 | 48 |
classical monocyte | 2.13e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.13e-23 | 42 |
macrophage dendritic cell progenitor | 4.23e-23 | 61 |
monopoietic cell | 1.28e-21 | 59 |
monocyte | 1.28e-21 | 59 |
monoblast | 1.28e-21 | 59 |
promonocyte | 1.28e-21 | 59 |
granulocyte monocyte progenitor cell | 1.76e-20 | 67 |
myeloid leukocyte | 4.44e-19 | 72 |
myeloid lineage restricted progenitor cell | 1.43e-18 | 66 |
multi fate stem cell | 2.06e-16 | 427 |
somatic stem cell | 1.38e-15 | 433 |
stem cell | 1.59e-14 | 441 |
motile cell | 2.05e-12 | 386 |
mesenchymal cell | 2.33e-12 | 354 |
connective tissue cell | 7.10e-12 | 361 |
myeloid cell | 3.79e-10 | 108 |
common myeloid progenitor | 3.79e-10 | 108 |
hematopoietic lineage restricted progenitor cell | 2.53e-08 | 120 |
nongranular leukocyte | 1.13e-07 | 115 |
vascular associated smooth muscle cell | 1.35e-07 | 32 |
leukocyte | 2.90e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.54e-19 | 76 |
musculoskeletal system | 6.24e-18 | 167 |
bone element | 1.92e-17 | 82 |
skeletal element | 6.27e-16 | 90 |
skeletal system | 1.35e-14 | 100 |
immune system | 8.75e-13 | 93 |
hematopoietic system | 5.65e-12 | 98 |
blood island | 5.65e-12 | 98 |
connective tissue | 2.04e-11 | 371 |
mesoderm | 2.84e-10 | 315 |
mesoderm-derived structure | 2.84e-10 | 315 |
presumptive mesoderm | 2.84e-10 | 315 |
lateral plate mesoderm | 2.94e-10 | 203 |
hemolymphoid system | 1.56e-09 | 108 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.00e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.