FFCP PHASE1:Hg19::chr11:6413297..6413309,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6609|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11120|TSSclassifier=N|UniProt=P17405|association_with_transcript=190bp_to_X52679_5end|description=CAGE_peak_7_at_SMPD1_5end|id=chr11:6413297..6413309,+|ontology_enrichment_celltype=CL:0000055!1.26e-12!180;CL:0000057!4.42e-07!75;CL:0002334!7.39e-07!12|ontology_enrichment_celltype_v019=CL:0002581;1.05e-08;1!CL:0002591;1.05e-08;1!CL:1000306;2.67e-08;4!CL:0002547;2.67e-08;4!CL:0002595;8.40e-07;5|ontology_enrichment_celltype_v019_2=CL:0002581,5.70e-09,1;CL:0002591,1.22e-08,1;CL:1000306,2.31e-08,4;CL:0002547,2.31e-08,4;CL:0002595,6.85e-07,5|ontology_enrichment_development_v019=UBERON:0010226;1.05e-08;1!UBERON:0006242;1.05e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;8.87e-11;3!DOID:127;8.87e-11;3!DOID:0060072;2.67e-08;4|ontology_enrichment_disease_v019_2=DOID:0060084,8.90e-11,3;DOID:127,8.90e-11,3;DOID:0060072,2.68e-08,4|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0002084;1.05e-08;1!UBERON:0002082;1.05e-08;1!UBERON:0004797;2.67e-08;4!UBERON:0000415;2.67e-08;4!UBERON:0007240;2.67e-08;4!UBERON:0005742;2.67e-08;4!UBERON:0005734;2.67e-08;4!UBERON:0004664;2.67e-08;4!UBERON:0004663;2.67e-08;4!UBERON:0003834;8.40e-07;5!UBERON:0001533;8.40e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0002084,7.18e-09,1;UBERON:0002082,7.18e-09,1;UBERON:0010226,7.18e-09,1;UBERON:0000415,2.31e-08,4;UBERON:0007240,2.31e-08,4;UBERON:0005742,2.31e-08,4;UBERON:0005734,2.31e-08,4;UBERON:0004664,2.31e-08,4;UBERON:0004663,2.31e-08,4;UBERON:0003834,6.85e-07,5;UBERON:0001533,6.85e-07,5|phase1_expression=0.726713517082227,0,0.281908808191942,1.0007329835313,0.446961094427288,0,5.06599756336621,0.631719873426831,0.522371256399677,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0.331397375727916,0.672325146451775,0,0,0.975865597581014,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0,0,0,0,1.1507695692886,0,0,0,0,0,0.188242339542605,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0.502497330513487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0.111410456885174,0.294605907474837,0,0.270803863765016,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,0.869079113764942,0,0.486634870302636,0,0.221729397462564,0,0.130979075497713,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.838998872419812,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0.759783069987479,0.132409180813219,1.72101972449288,1.06400514659507,0,0,0.49333509683432,0,0.134710672069688,0,0.454072282934794,0,0,0,0,0.448346041655403,0.117434498643765,0,0,0,0.245668634623536,0.103325781175765,0,1.23633464639278,0,0.718618141816238,0.168336113954066,0,0,0.438977620880838,0,0.600952235626387,0.113432183160021,0.358779271377724,0.213557388818567,0.211931901159562,0,0.206105058476878,0,0.18611685633159,0,0,0,0.0920498986422993,0.323292113637624,0,0.10075209822764,0,0,0,0,0.243947412259191,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0.721879481669586,0.118306800039844,0,0,0.110293972732394,0,0,0.134831308160164,0,0.769494313892781,0,0,0.4115740113314,0,1.26755034821831,0,0.590789906681404,0,0,0.343135620597051,0,0,0,0.0925884451585296,0.325808305310325,0,0,0,0,0.144366447761074,0.462985512576611,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0.176096868026452,0,0.288239906833923,0.50496973370552,0.253991577168676,0.381988425558278,2.34434894420094,0,0.102827492703324,0.300343057843917,0.285826432630578,0.112131084345361,0,0.07333828582095,0.258543431515556,0,0,1.06375246633948,0,0,0,0.266422179016099,0,0,0.823240336780769,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0.479249710983165,1.14861935834114,0,0.289562613335158,0.821905290201534,0.179060963239896,0.224170287987055,0,0,0.385029108839245,0,0,0,0.167516265334349,0,0,0,0,0.24538298343828,0.500170521059677,0,0.207970861530807,0,0.157702415033935,0,0.601892199455438,6.82222512167955,2.0694614258501,0.664225598535437,0.184369168541703,0.434418072340414,0.979005787313703,0.686286847621712,0,0.215714200818617,0.106727557803444,0.606255142892519,3.32870879020994,0.30239029332968,0.248107807818777,0.306923946576125,0.561320188866147,0.896974044789907,1.02341449813341,0.321707842287215,1.48418066444991,0.154209693802656,0.710246901252508,0.164254312027618,0,0.116210378459959,0.120859449591622,0,0.0920809889358963,0.229628896329213,0.364182336013434,0.917870904715969,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.215915916102139,0,0.270946437543853,0.501689773854853,0,0.831076008928724,0,0,0,0,0.328014645699706,0.325378394664303,0.206082023295445,0.0915694648183434,0,0,0,0,0.290012154876366,0,0,0,0.107420244868274,0.290033387828457,0,0.356128142586949,0,0,0,0,0.464845549297286,2.20368642781448,0.6970372701606,0,0,0,0.55597265731176,0.143124886741991,0,0,0.1906301939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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6609 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11120 | |||
|TSSclassifier=N | |||
|UniProt=P17405 | |||
|association_with_transcript=190bp_to_X52679_5end | |||
|description=CAGE_peak_7_at_SMPD1_5end | |||
|id=chr11:6413297..6413309,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.26e-12!180;CL:0000057!4.42e-07!75;CL:0002334!7.39e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002581;1.05e-08;1!CL:0002591;1.05e-08;1!CL:1000306;2.67e-08;4!CL:0002547;2.67e-08;4!CL:0002595;8.40e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002581,5.70e-09,1;CL:0002591,1.22e-08,1;CL:1000306,2.31e-08,4;CL:0002547,2.31e-08,4;CL:0002595,6.85e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0010226;1.05e-08;1!UBERON:0006242;1.05e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;8.87e-11;3!DOID:127;8.87e-11;3!DOID:0060072;2.67e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,8.90e-11,3;DOID:127,8.90e-11,3;DOID:0060072,2.68e-08,4 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002084;1.05e-08;1!UBERON:0002082;1.05e-08;1!UBERON:0004797;2.67e-08;4!UBERON:0000415;2.67e-08;4!UBERON:0007240;2.67e-08;4!UBERON:0005742;2.67e-08;4!UBERON:0005734;2.67e-08;4!UBERON:0004664;2.67e-08;4!UBERON:0004663;2.67e-08;4!UBERON:0003834;8.40e-07;5!UBERON:0001533;8.40e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002084,7.18e-09,1;UBERON:0002082,7.18e-09,1;UBERON:0010226,7.18e-09,1;UBERON:0000415,2.31e-08,4;UBERON:0007240,2.31e-08,4;UBERON:0005742,2.31e-08,4;UBERON:0005734,2.31e-08,4;UBERON:0004664,2.31e-08,4;UBERON:0004663,2.31e-08,4;UBERON:0003834,6.85e-07,5;UBERON:0001533,6.85e-07,5 | |||
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| |||
|short_description=p7@SMPD1 | |||
}} |
Revision as of 18:46, 10 September 2013
Short description: | p7@SMPD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_SMPD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 190bp_to_X52679_5end |
EntrezGene: | SMPD1 |
HGNC: | 11120 |
UniProt: | P17405 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
perirenal preadipocyte | 5.70e-09 | 1 |
smooth muscle cell of the pulmonary artery | 1.22e-08 | 1 |
fibroblast of tunica adventitia of artery | 2.31e-08 | 4 |
fibroblast of the aortic adventitia | 2.31e-08 | 4 |
smooth muscle cell of the subclavian artery | 6.85e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
heart left ventricle | 7.18e-09 | 1 |
cardiac ventricle | 7.18e-09 | 1 |
future cardiac ventricle | 7.18e-09 | 1 |
artery wall | 2.31e-08 | 4 |
tunica adventitia of artery | 2.31e-08 | 4 |
adventitia | 2.31e-08 | 4 |
tunica adventitia of blood vessel | 2.31e-08 | 4 |
aorta tunica adventitia | 2.31e-08 | 4 |
aorta wall | 2.31e-08 | 4 |
thoracic segment blood vessel | 6.85e-07 | 5 |
subclavian artery | 6.85e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 8.90e-11 | 3 |
leiomyoma | 8.90e-11 | 3 |
benign neoplasm | 2.68e-08 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.