FFCP PHASE1:Hg19::chr12:13065686..13065702,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C814|description=CAGE_peak_at_chr12:13065686..13065702,+|id=chr12:13065686..13065702,+|ontology_enrichment_celltype=CL:0000066!2.76e-28!254;CL:0000077!1.42e-10!19;CL:0000220!4.38e-09!246;CL:0002321!1.07e-08!248;CL:0000076!3.68e-08!62;CL:0000222!9.06e-08!119;CL:0000548!6.32e-07!679;CL:0000004!6.32e-07!679;CL:0000255!6.32e-07!679|ontology_enrichment_celltype_v019=CL:0000077;5.06e-14;19!CL:1000507;1.05e-07;10!CL:1000494;1.05e-07;10!CL:1000497;1.30e-07;17!CL:0002518;1.30e-07;17|ontology_enrichment_celltype_v019_2=CL:0000066,5.06e-29,253;CL:0000077,5.14e-14,19;CL:0000076,1.09e-08,63;CL:1000507,6.13e-08,10;CL:1000494,6.13e-08,10;CL:1000497,9.61e-08,17;CL:0002518,9.61e-08,17|ontology_enrichment_development_v019=UBERON:0008947;3.47e-14;29|ontology_enrichment_disease=DOID:305!1.61e-21!106;DOID:0050687!8.29e-17!143;DOID:14566!2.12e-08!239;DOID:299!2.95e-08!25;DOID:1749!1.07e-07!14;DOID:162!1.60e-07!235|ontology_enrichment_disease_v019=DOID:1749;5.86e-08;14!DOID:299;1.90e-07;25!DOID:305;7.91e-07;106|ontology_enrichment_disease_v019_2=DOID:305,1.69e-24,106;DOID:0050687,8.20e-19,143;DOID:14566,7.10e-12,239;DOID:162,5.15e-11,235;DOID:1749,2.64e-08,14;DOID:299,3.17e-07,25|ontology_enrichment_uberon=UBERON:0003104!1.73e-14!238;UBERON:0009142!1.73e-14!238;UBERON:0004119!1.95e-14!169;UBERON:0000925!1.95e-14!169;UBERON:0006595!1.95e-14!169;UBERON:0001007!1.98e-12!155;UBERON:0001555!1.98e-12!155;UBERON:0007026!1.98e-12!155;UBERON:0004921!5.91e-12!129;UBERON:0004185!5.91e-12!129;UBERON:0002100!8.55e-12!216;UBERON:0000077!3.80e-10!130;UBERON:0003064!6.21e-10!37;UBERON:0001008!8.91e-10!45;UBERON:0006554!1.64e-09!44;UBERON:0000481!2.20e-09!347;UBERON:0008947!2.43e-09!38;UBERON:0003258!2.43e-09!38;UBERON:0000464!3.68e-09!104;UBERON:0000065!4.07e-09!53;UBERON:0000466!3.69e-08!126;UBERON:0005153!4.60e-08!37;UBERON:0000490!4.76e-08!138;UBERON:0005911!5.98e-08!82;UBERON:0001048!7.67e-08!168;UBERON:0005177!9.53e-08!107;UBERON:0004122!1.34e-07!15;UBERON:0001737!1.50e-07!9;UBERON:0009569!1.60e-07!113;UBERON:0005156!2.61e-07!59;UBERON:0000990!2.61e-07!59;UBERON:0000162!2.71e-07!14;UBERON:0001353!2.71e-07!14;UBERON:0000163!2.71e-07!14;UBERON:0006866!2.71e-07!14;UBERON:0000164!2.71e-07!14;UBERON:0000931!2.71e-07!14;UBERON:0005256!4.40e-07!143;UBERON:0000926!4.45e-07!448;UBERON:0004120!4.45e-07!448;UBERON:0006603!4.45e-07!448;UBERON:0000072!5.64e-07!46;UBERON:0000915!7.56e-07!52|ontology_enrichment_uberon_v019=UBERON:0001737;2.90e-10;9!UBERON:0001557;2.90e-10;9!UBERON:0000065;2.33e-09;44!UBERON:0000072;5.46e-08;37!UBERON:0002367;8.40e-08;11!UBERON:0010147;8.40e-08;11!UBERON:0004211;1.05e-07;10!UBERON:0009773;1.05e-07;10!UBERON:0001231;1.05e-07;10!UBERON:0004810;1.05e-07;10!UBERON:0003937;6.42e-07;12!UBERON:0005399;6.42e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0004921,2.00e-12,118;UBERON:0004119,3.24e-12,160;UBERON:0000925,3.24e-12,160;UBERON:0006595,3.24e-12,160;UBERON:0008947,3.60e-12,38;UBERON:0003258,3.60e-12,38;UBERON:0000065,4.91e-11,54;UBERON:0001737,2.57e-10,9;UBERON:0001007,3.15e-10,145;UBERON:0001555,3.15e-10,145;UBERON:0007026,3.15e-10,145;UBERON:0001008,3.47e-10,48;UBERON:0002100,6.89e-10,199;UBERON:0006554,7.89e-10,47;UBERON:0005911,8.43e-10,82;UBERON:0005153,8.58e-10,37;UBERON:0004122,1.64e-09,15;UBERON:0000162,4.64e-09,14;UBERON:0001353,4.64e-09,14;UBERON:0000163,4.64e-09,14;UBERON:0006866,4.64e-09,14;UBERON:0000164,4.64e-09,14;UBERON:0000931,4.64e-09,14;UBERON:0000072,1.08e-08,47;UBERON:0005157,4.42e-08,47;UBERON:0001046,5.23e-08,19;UBERON:0004810,6.13e-08,10;UBERON:0002367,1.04e-07,11;UBERON:0010147,1.04e-07,11;UBERON:0009846,1.04e-07,11;UBERON:0003353,1.04e-07,11;UBERON:0004902,1.04e-07,11;UBERON:0003820,1.04e-07,11;UBERON:0009847,1.04e-07,11;UBERON:0005177,1.11e-07,101;UBERON:0003064,1.20e-07,28;UBERON:0000915,6.71e-07,52;UBERON:0003937,7.78e-07,12;UBERON:0005399,7.78e-07,12|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,1.74467704820074,0,0,0,19.1672470471177,40.4724677424008,0.655324116390517,1.31883489114227,1.23766352960047,2.31978163009541,0.672325146451775,0,0,0.487932798790507,0.369363174230364,1.22400414746552,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0.30120591877825,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0.575384784644301,0,0,0,1.29096936716765,0,0,0.272906150057846,0.449446968890169,0.918251677112708,0.320929027076094,0,0,0,0,0,0,0,0.75374599577023,0,0,1.21079900526674,1.10483290796269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,3.70801429346238,7.22878304769133,0,3.18662341713812,0,0,0.472674085820339,2.66075276955077,0.527008714158756,1.5062593682237,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,1.67799774483962,2.75118041940067,0.208994966536811,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C814 | |||
|description=CAGE_peak_at_chr12:13065686..13065702,+ | |||
|id=chr12:13065686..13065702,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.76e-28!254;CL:0000077!1.42e-10!19;CL:0000220!4.38e-09!246;CL:0002321!1.07e-08!248;CL:0000076!3.68e-08!62;CL:0000222!9.06e-08!119;CL:0000548!6.32e-07!679;CL:0000004!6.32e-07!679;CL:0000255!6.32e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0000077;5.06e-14;19!CL:1000507;1.05e-07;10!CL:1000494;1.05e-07;10!CL:1000497;1.30e-07;17!CL:0002518;1.30e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.06e-29,253;CL:0000077,5.14e-14,19;CL:0000076,1.09e-08,63;CL:1000507,6.13e-08,10;CL:1000494,6.13e-08,10;CL:1000497,9.61e-08,17;CL:0002518,9.61e-08,17 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.47e-14;29 | |||
|ontology_enrichment_disease=DOID:305!1.61e-21!106;DOID:0050687!8.29e-17!143;DOID:14566!2.12e-08!239;DOID:299!2.95e-08!25;DOID:1749!1.07e-07!14;DOID:162!1.60e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.86e-08;14!DOID:299;1.90e-07;25!DOID:305;7.91e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.69e-24,106;DOID:0050687,8.20e-19,143;DOID:14566,7.10e-12,239;DOID:162,5.15e-11,235;DOID:1749,2.64e-08,14;DOID:299,3.17e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.73e-14!238;UBERON:0009142!1.73e-14!238;UBERON:0004119!1.95e-14!169;UBERON:0000925!1.95e-14!169;UBERON:0006595!1.95e-14!169;UBERON:0001007!1.98e-12!155;UBERON:0001555!1.98e-12!155;UBERON:0007026!1.98e-12!155;UBERON:0004921!5.91e-12!129;UBERON:0004185!5.91e-12!129;UBERON:0002100!8.55e-12!216;UBERON:0000077!3.80e-10!130;UBERON:0003064!6.21e-10!37;UBERON:0001008!8.91e-10!45;UBERON:0006554!1.64e-09!44;UBERON:0000481!2.20e-09!347;UBERON:0008947!2.43e-09!38;UBERON:0003258!2.43e-09!38;UBERON:0000464!3.68e-09!104;UBERON:0000065!4.07e-09!53;UBERON:0000466!3.69e-08!126;UBERON:0005153!4.60e-08!37;UBERON:0000490!4.76e-08!138;UBERON:0005911!5.98e-08!82;UBERON:0001048!7.67e-08!168;UBERON:0005177!9.53e-08!107;UBERON:0004122!1.34e-07!15;UBERON:0001737!1.50e-07!9;UBERON:0009569!1.60e-07!113;UBERON:0005156!2.61e-07!59;UBERON:0000990!2.61e-07!59;UBERON:0000162!2.71e-07!14;UBERON:0001353!2.71e-07!14;UBERON:0000163!2.71e-07!14;UBERON:0006866!2.71e-07!14;UBERON:0000164!2.71e-07!14;UBERON:0000931!2.71e-07!14;UBERON:0005256!4.40e-07!143;UBERON:0000926!4.45e-07!448;UBERON:0004120!4.45e-07!448;UBERON:0006603!4.45e-07!448;UBERON:0000072!5.64e-07!46;UBERON:0000915!7.56e-07!52 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.90e-10;9!UBERON:0001557;2.90e-10;9!UBERON:0000065;2.33e-09;44!UBERON:0000072;5.46e-08;37!UBERON:0002367;8.40e-08;11!UBERON:0010147;8.40e-08;11!UBERON:0004211;1.05e-07;10!UBERON:0009773;1.05e-07;10!UBERON:0001231;1.05e-07;10!UBERON:0004810;1.05e-07;10!UBERON:0003937;6.42e-07;12!UBERON:0005399;6.42e-07;12 | |||
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| |||
|short_description=p@chr12:13065686..13065702,+ | |||
}} |
Revision as of 21:45, 10 September 2013
Short description: | p@chr12:13065686..13065702, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:13065686..13065702, + |
Coexpression cluster: | C814_Alveolar_mesothelioma_bile_Renal_papillotubular_papillary_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.06e-29 | 253 |
mesothelial cell | 5.14e-14 | 19 |
squamous epithelial cell | 1.09e-08 | 63 |
kidney tubule cell | 6.13e-08 | 10 |
nephron tubule epithelial cell | 6.13e-08 | 10 |
kidney cell | 9.61e-08 | 17 |
kidney epithelial cell | 9.61e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.69e-24 | 106 |
cell type cancer | 8.20e-19 | 143 |
disease of cellular proliferation | 7.10e-12 | 239 |
cancer | 5.15e-11 | 235 |
squamous cell carcinoma | 2.64e-08 | 14 |
adenocarcinoma | 3.17e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.