FFCP PHASE1:Hg19::chr12:56694142..56694178,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1431|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2422|TSSclassifier=S|UniProt=O75390,F8VWQ5,F8W4S1,Q0QEL2|association_with_transcript=0bp_to_ENST00000351328,ENST00000547283,ENST00000548567,ENST00000548849,ENST00000550655,ENST00000550996,NM_004077,uc001skr.1,uc001sks.1,uc001skt.1,uc010sql.1_5end|description=CAGE_peak_2_at_CS_5end|id=chr12:56694142..56694178,-|ontology_enrichment_celltype=CL:0000066!6.85e-11!254;CL:1000497!6.08e-08!18;CL:0002518!6.08e-08!18;CL:0000115!6.16e-08!35;CL:1000449!8.92e-08!16;CL:0002078!1.09e-07!44|ontology_enrichment_celltype_v019=CL:1000497;1.36e-08;17!CL:0002518;1.36e-08;17!CL:1000449;1.66e-08;15!CL:0000115;3.59e-07;36!CL:0002681;5.52e-07;12!CL:0002584;5.52e-07;12|ontology_enrichment_celltype_v019_2=CL:0000066,4.80e-11,253;CL:1000497,1.11e-08,17;CL:0002518,1.11e-08,17;CL:1000449,1.42e-08,15;CL:0000115,2.25e-08,36;CL:0002078,4.29e-08,45;CL:0002681,4.89e-07,12;CL:0002584,4.89e-07,12|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000119!2.81e-13!312;UBERON:0000483!2.54e-12!309;UBERON:0000064!9.06e-11!219;UBERON:0000481!9.52e-10!347;UBERON:0000480!2.55e-09!626;UBERON:0000467!3.83e-09!625;UBERON:0002050!5.40e-08!605;UBERON:0005423!5.40e-08!605;UBERON:0000923!5.73e-08!604;UBERON:0005291!5.73e-08!604;UBERON:0006598!5.73e-08!604;UBERON:0002532!5.73e-08!604;UBERON:0004211!8.92e-08!16;UBERON:0001285!8.92e-08!16;UBERON:0007684!8.92e-08!16;UBERON:0003220!8.92e-08!16;UBERON:0004208!8.92e-08!16;UBERON:0002113!1.51e-07!27;UBERON:0003918!1.51e-07!27;UBERON:0005095!1.51e-07!27;UBERON:0007687!1.51e-07!27;UBERON:0000922!1.90e-07!612;UBERON:0000468!4.66e-07!659;UBERON:0001851!5.24e-07!16;UBERON:0003103!5.49e-07!69;UBERON:0000475!7.51e-07!365;UBERON:0006555!7.84e-07!17;UBERON:0005103!7.84e-07!17;UBERON:0000083!7.84e-07!17;UBERON:0009201!7.84e-07!17;UBERON:0004819!7.84e-07!17;UBERON:0006553!7.84e-07!17;UBERON:0003074!7.84e-07!17;UBERON:0003060!7.84e-07!17;UBERON:0000489!8.94e-07!32|ontology_enrichment_uberon_v019=UBERON:0002113;3.74e-09;24!UBERON:0011143;3.74e-09;24!UBERON:0006554;6.05e-09;30!UBERON:0001008;6.05e-09;30!UBERON:0006555;1.66e-08;15!UBERON:0004819;1.66e-08;15!UBERON:0001285;1.66e-08;15!UBERON:0007684;1.66e-08;15!UBERON:0000489;4.38e-08;29!UBERON:0001851;1.21e-07;15!UBERON:0001225;5.52e-07;12!UBERON:0008987;5.52e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.11e-11,309;UBERON:0000483,8.67e-11,306;UBERON:0004211,1.42e-08,15;UBERON:0009773,1.42e-08,15;UBERON:0001231,1.42e-08,15;UBERON:0001285,1.42e-08,15;UBERON:0007684,1.42e-08,15;UBERON:0004208,1.42e-08,15;UBERON:0005423,1.68e-08,581;UBERON:0002113,4.63e-08,26;UBERON:0003918,4.63e-08,26;UBERON:0011143,4.63e-08,26;UBERON:0005095,4.63e-08,26;UBERON:0007687,4.63e-08,26;UBERON:0000922,6.40e-08,592;UBERON:0001851,9.86e-08,15;UBERON:0006555,1.66e-07,16;UBERON:0004819,1.66e-07,16;UBERON:0003103,3.11e-07,68;UBERON:0000489,3.46e-07,31;UBERON:0001225,4.89e-07,12;UBERON:0008987,4.89e-07,12;UBERON:0005177,7.24e-07,101|phase1_expression=13.8075568245623,19.4831476740795,16.6326196833246,9.00659685178174,11.1740273606822,7.85104671690332,7.59899634504932,17.6881564559513,32.1258322685801,46.4437139987852,49.5438829260424,44.5620399145551,34.5534741479274,19.3075510617673,19.552445167947,15.4634783683908,16.2727522566474,10.9546513558106,18.0535135552488,36.9363174230364,51.4081741935518,37.6145665773705,39.2143302369548,40.6517042466466,44.3165517769654,34.1567923693342,39.2440817570741,34.3179006527642,18.0947567350496,17.2723229143746,26.3187409637329,32.1797428567625,61.7472133495413,48.807529342016,34.3179698570736,45.9206620934372,9.9824149373848,27.145775018062,29.4800337781108,30.5985327709351,23.2872093209521,21.7008756232716,23.6969522223452,20.0649569515799,24.5619363397726,29.3526714037258,25.5671940596253,22.2030659531786,18.8920886246013,21.001544639517,25.359909946381,18.9185783910868,24.4769433322999,22.5919639254339,25.7310324529249,22.40083840557,18.5576182039335,15.2811969422658,19.8954530041087,18.6138835704134,18.5407766481722,24.408996213817,29.7200849856231,28.9832830362232,20.3146467040009,24.9649498864101,24.912889959823,21.3561365468232,17.2089363078666,20.1985625575758,29.6645756290351,20.2552699793161,17.0889689218078,18.3792099091389,25.7251202957703,18.4499608047371,26.2848996882799,26.1307793544221,20.8943262706204,20.8059302931111,20.4884177515063,17.1704304538756,15.839662001519,15.2918811153397,13.3426388079533,10.2415253415962,12.0118796110804,12.6445536789986,17.8482115651913,13.3567525634951,16.507176104174,15.2681669236444,10.7036503875064,18.5039860010636,19.6177997043538,22.9144153754317,16.523620689562,16.8994627982141,13.7753004329671,15.046784585161,10.7554347989085,10.8892995318989,13.6378709885538,17.7142626447426,13.5518717438425,16.6150420937716,13.8109970520158,28.5643642988256,26.4020475546553,23.0213066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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1431 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2422 | |||
|TSSclassifier=S | |||
|UniProt=O75390,F8VWQ5,F8W4S1,Q0QEL2 | |||
|association_with_transcript=0bp_to_ENST00000351328,ENST00000547283,ENST00000548567,ENST00000548849,ENST00000550655,ENST00000550996,NM_004077,uc001skr.1,uc001sks.1,uc001skt.1,uc010sql.1_5end | |||
|description=CAGE_peak_2_at_CS_5end | |||
|id=chr12:56694142..56694178,- | |||
|ontology_enrichment_celltype=CL:0000066!6.85e-11!254;CL:1000497!6.08e-08!18;CL:0002518!6.08e-08!18;CL:0000115!6.16e-08!35;CL:1000449!8.92e-08!16;CL:0002078!1.09e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:1000497;1.36e-08;17!CL:0002518;1.36e-08;17!CL:1000449;1.66e-08;15!CL:0000115;3.59e-07;36!CL:0002681;5.52e-07;12!CL:0002584;5.52e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.80e-11,253;CL:1000497,1.11e-08,17;CL:0002518,1.11e-08,17;CL:1000449,1.42e-08,15;CL:0000115,2.25e-08,36;CL:0002078,4.29e-08,45;CL:0002681,4.89e-07,12;CL:0002584,4.89e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002113;3.74e-09;24!UBERON:0011143;3.74e-09;24!UBERON:0006554;6.05e-09;30!UBERON:0001008;6.05e-09;30!UBERON:0006555;1.66e-08;15!UBERON:0004819;1.66e-08;15!UBERON:0001285;1.66e-08;15!UBERON:0007684;1.66e-08;15!UBERON:0000489;4.38e-08;29!UBERON:0001851;1.21e-07;15!UBERON:0001225;5.52e-07;12!UBERON:0008987;5.52e-07;12 | |||
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| |||
|short_description=p2@CS | |||
}} |
Revision as of 23:32, 10 September 2013
Short description: | p2@CS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_CS_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000351328, ENST00000547283, ENST00000548567, ENST00000548849, ENST00000550655, ENST00000550996, NM_004077, uc001skr.1, uc001sks.1, uc001skt.1, uc010sql.1_5end |
EntrezGene: | CS |
HGNC: | 2422 |
UniProt: | O75390F8VWQ5F8W4S1Q0QEL2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.80e-11 | 253 |
kidney cell | 1.11e-08 | 17 |
kidney epithelial cell | 1.11e-08 | 17 |
epithelial cell of nephron | 1.42e-08 | 15 |
endothelial cell | 2.25e-08 | 36 |
meso-epithelial cell | 4.29e-08 | 45 |
kidney cortical cell | 4.89e-07 | 12 |
renal cortical epithelial cell | 4.89e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.11e-11 | 309 |
epithelium | 8.67e-11 | 306 |
nephron epithelium | 1.42e-08 | 15 |
renal tubule | 1.42e-08 | 15 |
nephron tubule | 1.42e-08 | 15 |
nephron | 1.42e-08 | 15 |
uriniferous tubule | 1.42e-08 | 15 |
nephrogenic mesenchyme | 1.42e-08 | 15 |
developing anatomical structure | 1.68e-08 | 581 |
kidney | 4.63e-08 | 26 |
kidney mesenchyme | 4.63e-08 | 26 |
upper urinary tract | 4.63e-08 | 26 |
kidney rudiment | 4.63e-08 | 26 |
kidney field | 4.63e-08 | 26 |
embryo | 6.40e-08 | 592 |
cortex | 9.86e-08 | 15 |
excretory tube | 1.66e-07 | 16 |
kidney epithelium | 1.66e-07 | 16 |
compound organ | 3.11e-07 | 68 |
cavitated compound organ | 3.46e-07 | 31 |
cortex of kidney | 4.89e-07 | 12 |
renal parenchyma | 4.89e-07 | 12 |
trunk region element | 7.24e-07 | 101 |
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