FFCP PHASE1:Hg19::chr12:7848364..7848378,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9573|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4218|TSSclassifier=S|UniProt=Q9NR23|association_with_transcript=0bp_to_ENST00000329913_5end|coexpression_cluster_id=C157|description=CAGE_peak_1_at_GDF3_5end|id=chr12:7848364..7848378,-|ontology_enrichment_celltype=CL:0000115!5.01e-22!35;CL:0002078!7.38e-18!44;CL:0002139!2.42e-17!24;CL:0002543!1.31e-12!6;CL:0000071!1.16e-11!18;CL:0002546!1.16e-11!18;CL:0002322!1.52e-11!5;CL:0000213!4.93e-11!57;CL:0000215!4.93e-11!57;CL:0000039!1.03e-07!7;CL:0000586!1.03e-07!7;CL:0005020!1.62e-07!6;CL:0002138!1.62e-07!6;CL:0005022!1.62e-07!6;CL:0002618!2.77e-07!3|ontology_enrichment_celltype_v019=CL:0002322;2.79e-29;5!CL:0002543;1.17e-22;6!CL:0002618;2.90e-17;3!CL:0000115;3.94e-16;36!CL:0000071;4.53e-14;18!CL:0000039;5.90e-14;7!CL:0000586;5.90e-14;7!CL:0002262;4.26e-12;2!CL:1000398;4.26e-12;2!CL:0002188;1.69e-10;5!CL:0002139;2.44e-10;24!CL:0002321;1.32e-09;15!CL:0000540;2.74e-09;6!CL:0000404;2.74e-09;6!CL:0002078;1.20e-08;45!CL:0000213;1.78e-08;58!CL:0000215;1.78e-08;58!CL:1000746;1.25e-07;7!CL:1000612;1.25e-07;7|ontology_enrichment_celltype_v019_2=CL:0002322,2.80e-29,5;CL:0002543,5.24e-23,6;CL:0000115,1.02e-19,36;CL:0002618,1.91e-17,3;CL:0002078,2.63e-15,45;CL:0000071,3.29e-14,18;CL:0002546,3.29e-14,18;CL:0000039,5.90e-14,7;CL:0000586,5.90e-14,7;CL:0002262,3.70e-12,2;CL:1000398,3.70e-12,2;CL:0000213,2.36e-11,58;CL:0000215,2.36e-11,58;CL:0002188,1.46e-10,5;CL:0002139,1.93e-10,24;CL:0000540,2.82e-09,6;CL:0000031,2.82e-09,6;CL:0000404,2.82e-09,6;CL:1000746,1.12e-07,7;CL:1000612,1.12e-07,7;CL:0000047,4.63e-07,8|ontology_enrichment_development_v019=UBERON:0009117;1.55e-14;10!UBERON:0005564;1.55e-14;10!CL:0002546;4.53e-14;18!CL:0000031;2.74e-09;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3095;5.10e-12;22!DOID:2994;5.10e-12;22!DOID:9119;5.52e-07;1|ontology_enrichment_disease_v019_2=DOID:3095,5.76e-12,22;DOID:2994,5.76e-12,22;DOID:9119,5.37e-07,1|ontology_enrichment_uberon=UBERON:0003135!1.13e-13!11;UBERON:0000473!4.44e-12!8;UBERON:0001986!1.16e-11!18;UBERON:0004638!1.16e-11!18;UBERON:0004852!1.16e-11!18;UBERON:0001638!1.63e-10!9;UBERON:0003920!1.63e-10!9;UBERON:0004582!1.63e-10!9;UBERON:0000487!4.88e-09!22;UBERON:0000055!1.01e-08!69;UBERON:0002465!5.05e-08!10;UBERON:0001473!6.60e-08!8;UBERON:0004536!6.60e-08!8;UBERON:0006558!6.60e-08!8;UBERON:0006914!1.23e-07!25;UBERON:0002049!1.33e-07!79;UBERON:0007798!1.33e-07!79;UBERON:0007023!3.07e-07!115;UBERON:0003101!4.45e-07!22;UBERON:0000079!4.45e-07!22|ontology_enrichment_uberon_v019=UBERON:0001638;4.66e-15;9!UBERON:0003920;4.66e-15;9!UBERON:0004582;4.66e-15;9!UBERON:0004638;4.53e-14;18!UBERON:0001986;4.53e-14;18!UBERON:0004852;4.53e-14;18!UBERON:0000473;3.19e-12;8!UBERON:0001281;4.26e-12;2!UBERON:0003497;4.26e-12;2!UBERON:0003909;4.26e-12;2!UBERON:0003835;4.26e-12;2!UBERON:0000487;2.34e-11;22!UBERON:0002066;1.43e-10;5!UBERON:0006914;6.85e-10;25!UBERON:0000353;4.94e-09;15!UBERON:0000922;6.25e-09;49!UBERON:0003135;6.63e-09;11!UBERON:0001280;2.37e-08;3!UBERON:0004647;2.37e-08;3!UBERON:0002106;3.02e-08;3!UBERON:0000074;1.25e-07;7!UBERON:0001229;1.25e-07;7!UBERON:0000991;8.99e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0001638,2.75e-15,9;UBERON:0003920,2.75e-15,9;UBERON:0004582,2.75e-15,9;UBERON:0004638,3.29e-14,18;UBERON:0001986,3.29e-14,18;UBERON:0004852,3.29e-14,18;UBERON:0000473,3.19e-12,8;UBERON:0001281,3.70e-12,2;UBERON:0003497,3.70e-12,2;UBERON:0003909,3.70e-12,2;UBERON:0003835,3.70e-12,2;UBERON:0000487,1.81e-11,22;UBERON:0003887,2.56e-11,12;UBERON:0002066,1.12e-10,5;UBERON:0006914,5.48e-10,25;UBERON:0000353,4.37e-09,15;UBERON:0003135,6.63e-09,11;UBERON:0003886,1.05e-08,54;UBERON:0001280,2.16e-08,3;UBERON:0004647,2.16e-08,3;UBERON:0005171,2.16e-08,3;UBERON:0002106,3.13e-08,3;UBERON:0004854,3.13e-08,3;UBERON:0009034,3.13e-08,3;UBERON:0002095,3.13e-08,3;UBERON:0004782,3.13e-08,3;UBERON:0003281,3.13e-08,3;UBERON:0009664,3.13e-08,3;UBERON:0002296,3.13e-08,3;UBERON:0005602,3.13e-08,3;UBERON:0001179,3.13e-08,3;UBERON:0006293,3.13e-08,3;UBERON:0010532,1.12e-07,7;UBERON:0000074,1.12e-07,7;UBERON:0001229,1.12e-07,7;UBERON:0001230,1.12e-07,7;UBERON:0003220,1.12e-07,7;UBERON:0005749,1.12e-07,7;UBERON:0004199,1.12e-07,7;UBERON:0004209,1.12e-07,7;UBERON:0004198,1.12e-07,7;UBERON:0002553,1.67e-07,61;UBERON:0000058,4.04e-07,19;UBERON:0000991,9.05e-07,21;UBERON:0009196,9.05e-07,21;UBERON:0009117,9.05e-07,21;UBERON:0005564,9.05e-07,21;UBERON:0005103,9.08e-07,8;UBERON:0000083,9.08e-07,8;UBERON:0009201,9.08e-07,8;UBERON:0006553,9.08e-07,8;UBERON:0003074,9.08e-07,8;UBERON:0003060,9.08e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.196468613246569,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9573 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4218 | |||
|TSSclassifier=S | |||
|UniProt=Q9NR23 | |||
|association_with_transcript=0bp_to_ENST00000329913_5end | |||
|coexpression_cluster_id=C157 | |||
|description=CAGE_peak_1_at_GDF3_5end | |||
|id=chr12:7848364..7848378,- | |||
|ontology_enrichment_celltype=CL:0000115!5.01e-22!35;CL:0002078!7.38e-18!44;CL:0002139!2.42e-17!24;CL:0002543!1.31e-12!6;CL:0000071!1.16e-11!18;CL:0002546!1.16e-11!18;CL:0002322!1.52e-11!5;CL:0000213!4.93e-11!57;CL:0000215!4.93e-11!57;CL:0000039!1.03e-07!7;CL:0000586!1.03e-07!7;CL:0005020!1.62e-07!6;CL:0002138!1.62e-07!6;CL:0005022!1.62e-07!6;CL:0002618!2.77e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.79e-29;5!CL:0002543;1.17e-22;6!CL:0002618;2.90e-17;3!CL:0000115;3.94e-16;36!CL:0000071;4.53e-14;18!CL:0000039;5.90e-14;7!CL:0000586;5.90e-14;7!CL:0002262;4.26e-12;2!CL:1000398;4.26e-12;2!CL:0002188;1.69e-10;5!CL:0002139;2.44e-10;24!CL:0002321;1.32e-09;15!CL:0000540;2.74e-09;6!CL:0000404;2.74e-09;6!CL:0002078;1.20e-08;45!CL:0000213;1.78e-08;58!CL:0000215;1.78e-08;58!CL:1000746;1.25e-07;7!CL:1000612;1.25e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.80e-29,5;CL:0002543,5.24e-23,6;CL:0000115,1.02e-19,36;CL:0002618,1.91e-17,3;CL:0002078,2.63e-15,45;CL:0000071,3.29e-14,18;CL:0002546,3.29e-14,18;CL:0000039,5.90e-14,7;CL:0000586,5.90e-14,7;CL:0002262,3.70e-12,2;CL:1000398,3.70e-12,2;CL:0000213,2.36e-11,58;CL:0000215,2.36e-11,58;CL:0002188,1.46e-10,5;CL:0002139,1.93e-10,24;CL:0000540,2.82e-09,6;CL:0000031,2.82e-09,6;CL:0000404,2.82e-09,6;CL:1000746,1.12e-07,7;CL:1000612,1.12e-07,7;CL:0000047,4.63e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.55e-14;10!UBERON:0005564;1.55e-14;10!CL:0002546;4.53e-14;18!CL:0000031;2.74e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;5.10e-12;22!DOID:2994;5.10e-12;22!DOID:9119;5.52e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.76e-12,22;DOID:2994,5.76e-12,22;DOID:9119,5.37e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003135!1.13e-13!11;UBERON:0000473!4.44e-12!8;UBERON:0001986!1.16e-11!18;UBERON:0004638!1.16e-11!18;UBERON:0004852!1.16e-11!18;UBERON:0001638!1.63e-10!9;UBERON:0003920!1.63e-10!9;UBERON:0004582!1.63e-10!9;UBERON:0000487!4.88e-09!22;UBERON:0000055!1.01e-08!69;UBERON:0002465!5.05e-08!10;UBERON:0001473!6.60e-08!8;UBERON:0004536!6.60e-08!8;UBERON:0006558!6.60e-08!8;UBERON:0006914!1.23e-07!25;UBERON:0002049!1.33e-07!79;UBERON:0007798!1.33e-07!79;UBERON:0007023!3.07e-07!115;UBERON:0003101!4.45e-07!22;UBERON:0000079!4.45e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001638;4.66e-15;9!UBERON:0003920;4.66e-15;9!UBERON:0004582;4.66e-15;9!UBERON:0004638;4.53e-14;18!UBERON:0001986;4.53e-14;18!UBERON:0004852;4.53e-14;18!UBERON:0000473;3.19e-12;8!UBERON:0001281;4.26e-12;2!UBERON:0003497;4.26e-12;2!UBERON:0003909;4.26e-12;2!UBERON:0003835;4.26e-12;2!UBERON:0000487;2.34e-11;22!UBERON:0002066;1.43e-10;5!UBERON:0006914;6.85e-10;25!UBERON:0000353;4.94e-09;15!UBERON:0000922;6.25e-09;49!UBERON:0003135;6.63e-09;11!UBERON:0001280;2.37e-08;3!UBERON:0004647;2.37e-08;3!UBERON:0002106;3.02e-08;3!UBERON:0000074;1.25e-07;7!UBERON:0001229;1.25e-07;7!UBERON:0000991;8.99e-07;21 | |||
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|short_description=p1@GDF3 | |||
}} |
Revision as of 00:33, 11 September 2013
Short description: | p1@GDF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GDF3_5end |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | 0bp_to_ENST00000329913_5end |
EntrezGene: | GDF3 |
HGNC: | 4218 |
UniProt: | Q9NR23 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.80e-29 | 5 |
vein endothelial cell | 5.24e-23 | 6 |
endothelial cell | 1.02e-19 | 36 |
endothelial cell of umbilical vein | 1.91e-17 | 3 |
meso-epithelial cell | 2.63e-15 | 45 |
blood vessel endothelial cell | 3.29e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.29e-14 | 18 |
germ line cell | 5.90e-14 | 7 |
germ cell | 5.90e-14 | 7 |
endothelial cell of sinusoid | 3.70e-12 | 2 |
endothelial cell of hepatic sinusoid | 3.70e-12 | 2 |
lining cell | 2.36e-11 | 58 |
barrier cell | 2.36e-11 | 58 |
glomerular endothelial cell | 1.46e-10 | 5 |
endothelial cell of vascular tree | 1.93e-10 | 24 |
neuron | 2.82e-09 | 6 |
neuroblast | 2.82e-09 | 6 |
electrically signaling cell | 2.82e-09 | 6 |
glomerular cell | 1.12e-07 | 7 |
kidney corpuscule cell | 1.12e-07 | 7 |
neuronal stem cell | 4.63e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.76e-12 | 22 |
germ cell cancer | 5.76e-12 | 22 |
acute myeloid leukemia | 5.37e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.