FFCP PHASE1:Hg19::chr15:63336209..63336321,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7168|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12010|TSSclassifier=W|UniProt=|association_with_transcript=-18bp_to_ENST00000559831_5end|coexpression_cluster_id=C1041|description=CAGE_peak_6_at_TPM1_5end|id=chr15:63336209..63336321,+|ontology_enrichment_celltype=CL:0000055!2.27e-19!180;CL:0000222!1.47e-13!119;CL:0000359!5.88e-12!32;CL:0000192!1.33e-11!42;CL:0000514!1.33e-11!42;CL:0002321!4.01e-11!248;CL:0000680!5.25e-11!57;CL:0000056!5.25e-11!57;CL:0000355!5.25e-11!57;CL:0000220!8.47e-11!246;CL:0000187!3.99e-10!54;CL:0000393!6.18e-10!60;CL:0000211!6.18e-10!60;CL:0000183!1.08e-09!59;CL:0000077!3.97e-08!19;CL:0000057!4.13e-08!75|ontology_enrichment_celltype_v019=CL:0000359;6.27e-13;32!CL:0000077;4.11e-09;19!CL:0000192;1.36e-08;43|ontology_enrichment_celltype_v019_2=CL:0000359,1.46e-13,32;CL:0000192,7.59e-12,43;CL:0000514,7.59e-12,43;CL:0000222,6.49e-10,121;CL:0000680,1.21e-09,58;CL:0000056,1.21e-09,58;CL:0000355,1.21e-09,58;CL:0000077,7.14e-09,19;CL:0000187,1.12e-08,55;CL:0000393,1.47e-08,61;CL:0000211,1.47e-08,61;CL:0000057,1.66e-07,76;CL:0002321,2.16e-07,250|ontology_enrichment_development_v019=CL:0000514;1.36e-08;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005256!1.48e-13!143;UBERON:0002385!1.94e-13!63;UBERON:0001015!1.94e-13!63;UBERON:0000383!1.94e-13!63;UBERON:0001134!4.15e-13!61;UBERON:0002036!4.15e-13!61;UBERON:0003082!4.15e-13!61;UBERON:0000486!6.35e-13!82;UBERON:0004872!1.33e-12!84;UBERON:0004290!2.04e-12!70;UBERON:0000914!4.51e-12!83;UBERON:0002329!4.51e-12!83;UBERON:0003077!4.51e-12!83;UBERON:0003059!4.51e-12!83;UBERON:0007282!4.51e-12!83;UBERON:0009618!4.51e-12!83;UBERON:0007285!4.51e-12!83;UBERON:0002100!7.12e-12!216;UBERON:0000475!1.32e-11!365;UBERON:0002049!2.16e-11!79;UBERON:0007798!2.16e-11!79;UBERON:0003914!3.90e-11!118;UBERON:0000468!5.25e-11!659;UBERON:0000481!8.98e-11!347;UBERON:0003104!3.36e-10!238;UBERON:0009142!3.36e-10!238;UBERON:0001637!3.76e-10!42;UBERON:0003509!3.76e-10!42;UBERON:0004572!3.76e-10!42;UBERON:0001009!5.66e-10!113;UBERON:0001981!7.99e-10!60;UBERON:0007500!7.99e-10!60;UBERON:0004537!7.99e-10!60;UBERON:0006965!7.99e-10!60;UBERON:0000055!2.31e-09!69;UBERON:0004573!9.15e-09!33;UBERON:0004571!9.15e-09!33;UBERON:0004535!9.47e-09!110;UBERON:0003103!1.09e-08!69;UBERON:0007100!1.92e-08!27;UBERON:0000490!2.38e-08!138;UBERON:0000119!1.03e-07!312;UBERON:0000483!1.31e-07!309;UBERON:0000467!1.44e-07!625;UBERON:0000480!2.14e-07!626;UBERON:0003886!7.12e-07!63|ontology_enrichment_uberon_v019=UBERON:0007100;2.70e-08;25|ontology_enrichment_uberon_v019_2=UBERON:0002385,6.59e-12,64;UBERON:0001015,6.59e-12,64;UBERON:0000383,6.59e-12,64;UBERON:0001134,6.64e-12,62;UBERON:0002036,6.64e-12,62;UBERON:0003082,6.64e-12,62;UBERON:0003104,8.69e-11,160;UBERON:0009142,8.69e-11,160;UBERON:0007524,1.03e-10,73;UBERON:0002329,1.17e-10,71;UBERON:0003059,1.17e-10,71;UBERON:0007282,1.17e-10,71;UBERON:0004290,1.17e-10,71;UBERON:0009618,1.17e-10,71;UBERON:0007503,1.58e-10,78;UBERON:0000486,2.08e-10,83;UBERON:0003077,2.79e-10,72;UBERON:0007285,2.79e-10,72;UBERON:0004872,4.32e-09,83;UBERON:0001637,4.87e-09,42;UBERON:0003509,4.87e-09,42;UBERON:0004572,4.87e-09,42;UBERON:0005256,5.91e-09,122;UBERON:0007100,1.17e-08,27;UBERON:0003914,1.66e-08,117;UBERON:0002049,3.24e-08,78;UBERON:0007798,3.24e-08,78;UBERON:0003103,6.90e-08,68;UBERON:0002100,1.11e-07,199;UBERON:0001009,1.20e-07,112;UBERON:0007500,1.38e-07,59;UBERON:0001981,1.38e-07,59;UBERON:0004537,1.38e-07,59;UBERON:0006965,1.38e-07,59;UBERON:0004573,1.64e-07,33;UBERON:0004571,1.64e-07,33|phase1_expression=4.90531624030503,9.42042305120326,8.03440103347036,6.00439790118782,4.46961094427288,7.85104671690332,2.53299878168311,0,0,0.737201809504527,0.697801167972428,3.71350332621293,5.01157258634062,0,0,12.101852636132,4.21886169616784,3.65155045193687,8.78279037822912,1.10808952269109,1.22400414746552,1.88072832886853,1.71741592278634,2.18999080116615,7.53255837568817,0,0,0,0,0,1.23852898652861,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,1.2786256184353,0.722878304769133,2.50668955317945,4.77993512570718,0.795285947051099,2.91980922181582,5.86115866417221,12.195116860441,14.8440787821383,0.196468613246569,0.364295288292542,0,0,0,0,0,0,0,0.993812036833525,0.860234595106124,0.347140501607594,0,0,0.550236083880135,2.08994966536811,0.258416759169329,1.06729878806013,2.00832367658802,0,0,0.24406205754817,0.367663080345869,5.67099363517232,0.357198913136319,0.44905874525234,0.225222960966644,1.53316637465883,0,0.366403487860815,0,0,0.436094052142534,23.35768172968,5.19185097824777,3.17782033951725,0.573673241497627,0.709336764396714,9.53151920241922,13.8773694448616,15.7867230986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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7168 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12010 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-18bp_to_ENST00000559831_5end | |||
|coexpression_cluster_id=C1041 | |||
|description=CAGE_peak_6_at_TPM1_5end | |||
|id=chr15:63336209..63336321,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.27e-19!180;CL:0000222!1.47e-13!119;CL:0000359!5.88e-12!32;CL:0000192!1.33e-11!42;CL:0000514!1.33e-11!42;CL:0002321!4.01e-11!248;CL:0000680!5.25e-11!57;CL:0000056!5.25e-11!57;CL:0000355!5.25e-11!57;CL:0000220!8.47e-11!246;CL:0000187!3.99e-10!54;CL:0000393!6.18e-10!60;CL:0000211!6.18e-10!60;CL:0000183!1.08e-09!59;CL:0000077!3.97e-08!19;CL:0000057!4.13e-08!75 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.27e-13;32!CL:0000077;4.11e-09;19!CL:0000192;1.36e-08;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.46e-13,32;CL:0000192,7.59e-12,43;CL:0000514,7.59e-12,43;CL:0000222,6.49e-10,121;CL:0000680,1.21e-09,58;CL:0000056,1.21e-09,58;CL:0000355,1.21e-09,58;CL:0000077,7.14e-09,19;CL:0000187,1.12e-08,55;CL:0000393,1.47e-08,61;CL:0000211,1.47e-08,61;CL:0000057,1.66e-07,76;CL:0002321,2.16e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;1.36e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.48e-13!143;UBERON:0002385!1.94e-13!63;UBERON:0001015!1.94e-13!63;UBERON:0000383!1.94e-13!63;UBERON:0001134!4.15e-13!61;UBERON:0002036!4.15e-13!61;UBERON:0003082!4.15e-13!61;UBERON:0000486!6.35e-13!82;UBERON:0004872!1.33e-12!84;UBERON:0004290!2.04e-12!70;UBERON:0000914!4.51e-12!83;UBERON:0002329!4.51e-12!83;UBERON:0003077!4.51e-12!83;UBERON:0003059!4.51e-12!83;UBERON:0007282!4.51e-12!83;UBERON:0009618!4.51e-12!83;UBERON:0007285!4.51e-12!83;UBERON:0002100!7.12e-12!216;UBERON:0000475!1.32e-11!365;UBERON:0002049!2.16e-11!79;UBERON:0007798!2.16e-11!79;UBERON:0003914!3.90e-11!118;UBERON:0000468!5.25e-11!659;UBERON:0000481!8.98e-11!347;UBERON:0003104!3.36e-10!238;UBERON:0009142!3.36e-10!238;UBERON:0001637!3.76e-10!42;UBERON:0003509!3.76e-10!42;UBERON:0004572!3.76e-10!42;UBERON:0001009!5.66e-10!113;UBERON:0001981!7.99e-10!60;UBERON:0007500!7.99e-10!60;UBERON:0004537!7.99e-10!60;UBERON:0006965!7.99e-10!60;UBERON:0000055!2.31e-09!69;UBERON:0004573!9.15e-09!33;UBERON:0004571!9.15e-09!33;UBERON:0004535!9.47e-09!110;UBERON:0003103!1.09e-08!69;UBERON:0007100!1.92e-08!27;UBERON:0000490!2.38e-08!138;UBERON:0000119!1.03e-07!312;UBERON:0000483!1.31e-07!309;UBERON:0000467!1.44e-07!625;UBERON:0000480!2.14e-07!626;UBERON:0003886!7.12e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;2.70e-08;25 | |||
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| |||
|short_description=p6@TPM1 | |||
}} |
Revision as of 07:45, 11 September 2013
Short description: | p6@TPM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_TPM1_5end |
Coexpression cluster: | C1041_heart_hepatic_left_mesodermal_smooth_spindle_skeletal |
Association with transcript: | -18bp_to_ENST00000559831_5end |
EntrezGene: | TPM1 |
HGNC: | 12010 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.46e-13 | 32 |
smooth muscle cell | 7.59e-12 | 43 |
smooth muscle myoblast | 7.59e-12 | 43 |
mesodermal cell | 6.49e-10 | 121 |
muscle precursor cell | 1.21e-09 | 58 |
myoblast | 1.21e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.21e-09 | 58 |
mesothelial cell | 7.14e-09 | 19 |
muscle cell | 1.12e-08 | 55 |
electrically responsive cell | 1.47e-08 | 61 |
electrically active cell | 1.47e-08 | 61 |
fibroblast | 1.66e-07 | 76 |
embryonic cell | 2.16e-07 | 250 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.