FFCP PHASE1:Hg19::chr16:28995973..28995989,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=|TSSclassifier=N|UniProt=|association_with_transcript=-354bp_to_CU678918_5end|coexpression_cluster_id=C728|description=CAGE_peak_2_at_CU678918_5end|id=chr16:28995973..28995989,-|ontology_enrichment_celltype=CL:0000763!2.28e-60!112;CL:0000049!2.28e-60!112;CL:0000766!1.11e-59!76;CL:0000839!3.41e-57!70;CL:0000557!3.31e-56!71;CL:0002057!8.48e-55!42;CL:0000037!2.24e-52!172;CL:0000566!2.24e-52!172;CL:0002032!7.69e-52!165;CL:0000837!7.69e-52!165;CL:0000860!1.94e-50!45;CL:0002194!4.47e-49!63;CL:0000576!4.47e-49!63;CL:0000040!4.47e-49!63;CL:0000559!4.47e-49!63;CL:0000988!1.74e-48!182;CL:0002009!3.26e-47!65;CL:0000738!1.89e-44!140;CL:0002031!1.32e-42!124;CL:0002087!2.44e-38!119;CL:0000134!3.92e-17!358;CL:0002320!1.88e-16!365;CL:0000219!1.99e-15!390;CL:0002274!3.18e-13!5;CL:0000457!3.18e-13!5;CL:0002191!3.18e-13!5;CL:0000097!3.18e-13!5;CL:0000831!3.18e-13!5;CL:0002028!3.18e-13!5;CL:0000048!3.19e-11!430;CL:0000723!8.02e-11!436;CL:0000034!2.63e-10!444;CL:0000767!1.67e-07!3;CL:0000163!4.41e-07!9;CL:0000623!9.30e-07!3;CL:0000825!9.30e-07!3|ontology_enrichment_celltype_v019=CL:0000860;3.01e-76;33!CL:0002057;3.01e-76;33!CL:0000473;3.62e-53;39!CL:0000234;3.62e-53;39!CL:0000576;1.40e-36;48!CL:0000766;1.78e-31;69!CL:0000097;8.52e-31;5!CL:0000163;4.89e-17;9!CL:0000763;2.60e-14;100!CL:0002087;5.81e-10;104!CL:0000738;3.03e-09;136|ontology_enrichment_celltype_v019_2=CL:0000860,1.10e-69,42;CL:0002057,1.10e-69,42;CL:0000839,2.16e-64,66;CL:0000557,2.29e-63,67;CL:0000766,4.43e-63,72;CL:0000473,2.15e-60,48;CL:0000234,2.15e-60,48;CL:0002194,2.23e-47,59;CL:0000576,2.23e-47,59;CL:0000040,2.23e-47,59;CL:0000559,2.23e-47,59;CL:0000763,8.29e-47,108;CL:0000049,8.29e-47,108;CL:0002009,1.07e-45,61;CL:0002031,2.89e-33,120;CL:0000738,4.57e-31,136;CL:0000097,6.71e-31,5;CL:0002028,6.71e-31,5;CL:0002032,1.17e-29,161;CL:0000837,1.17e-29,161;CL:0000037,3.42e-28,168;CL:0000988,1.76e-26,177;CL:0002087,3.24e-22,115;CL:0000163,4.29e-17,9;CL:0000134,2.29e-10,354;CL:0002320,4.74e-10,361;CL:0000219,6.16e-09,386;CL:0000048,1.43e-07,427;CL:0000723,2.20e-07,433;CL:0000034,3.86e-07,441|ontology_enrichment_development_v019=CL:0002057;2.24e-52;42!CL:0000049;3.61e-12;108|ontology_enrichment_disease=DOID:8692!4.49e-12!31;DOID:1240!3.44e-10!39;DOID:2531!5.45e-08!51;DOID:0060083!5.45e-08!51|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.99e-48!80;UBERON:0002390!2.74e-46!102;UBERON:0003061!2.74e-46!102;UBERON:0001474!3.83e-44!86;UBERON:0002193!7.19e-41!112;UBERON:0004765!1.18e-35!101;UBERON:0001434!1.18e-35!101;UBERON:0002405!2.71e-34!115;UBERON:0002204!1.50e-16!167;UBERON:0002384!1.59e-15!375;UBERON:0003081!1.83e-14!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.43e-55,76;UBERON:0001474,5.90e-51,82;UBERON:0004765,5.24e-46,90;UBERON:0002405,2.28e-44,93;UBERON:0002390,7.42e-42,98;UBERON:0003061,7.42e-42,98;UBERON:0001434,6.39e-41,100;UBERON:0002193,1.60e-37,108;UBERON:0002204,1.96e-22,167;UBERON:0003081,1.67e-17,203;UBERON:0002384,1.28e-09,371;UBERON:0000926,2.53e-09,315;UBERON:0004120,2.53e-09,315;UBERON:0006603,2.53e-09,315|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0.383829398097213,1.08371286321253,0,0,0,0,0,0,0.553995408531877,1.40381113229099,0.651032612147555,0,0.32389366601898,0,1.01778767145695,1.88937971844405,0.727752183563449,2.32429036905685,1.23350366406548,1.85823822537062,1.1507695692886,1.2808035326455,1.18241114944293,3.7922024881028,7.74581620300591,5.41705946377367,1.12945403725563,3.0019676506363,1.57306439111559,1.83650335422542,2.24650318953266,0.639337125799041,0.659702600373432,0.598390972864896,0.852449501065388,2.03146467040009,5.10646702222026,3.11411124497787,1.50749199154046,1.5644487552606,2.6062661364614,0.605399502633369,0.736555271975129,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0.14828656316206,0,1.04535523804977,0,0,0,0,0.318565414324097,0.651083453856419,0,0,0.127986611154418,0,0.236777252044017,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.936017060556951,0.594524649154913,0,0,0,0,0,0,2.95597942737566,3.34584049250259,12.0250307013648,2.59415916150531,3.7872730027914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0.197030760201927,0.215627574859517,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-354bp_to_CU678918_5end | |||
|coexpression_cluster_id=C728 | |||
|description=CAGE_peak_2_at_CU678918_5end | |||
|id=chr16:28995973..28995989,- | |||
|ontology_enrichment_celltype=CL:0000763!2.28e-60!112;CL:0000049!2.28e-60!112;CL:0000766!1.11e-59!76;CL:0000839!3.41e-57!70;CL:0000557!3.31e-56!71;CL:0002057!8.48e-55!42;CL:0000037!2.24e-52!172;CL:0000566!2.24e-52!172;CL:0002032!7.69e-52!165;CL:0000837!7.69e-52!165;CL:0000860!1.94e-50!45;CL:0002194!4.47e-49!63;CL:0000576!4.47e-49!63;CL:0000040!4.47e-49!63;CL:0000559!4.47e-49!63;CL:0000988!1.74e-48!182;CL:0002009!3.26e-47!65;CL:0000738!1.89e-44!140;CL:0002031!1.32e-42!124;CL:0002087!2.44e-38!119;CL:0000134!3.92e-17!358;CL:0002320!1.88e-16!365;CL:0000219!1.99e-15!390;CL:0002274!3.18e-13!5;CL:0000457!3.18e-13!5;CL:0002191!3.18e-13!5;CL:0000097!3.18e-13!5;CL:0000831!3.18e-13!5;CL:0002028!3.18e-13!5;CL:0000048!3.19e-11!430;CL:0000723!8.02e-11!436;CL:0000034!2.63e-10!444;CL:0000767!1.67e-07!3;CL:0000163!4.41e-07!9;CL:0000623!9.30e-07!3;CL:0000825!9.30e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.01e-76;33!CL:0002057;3.01e-76;33!CL:0000473;3.62e-53;39!CL:0000234;3.62e-53;39!CL:0000576;1.40e-36;48!CL:0000766;1.78e-31;69!CL:0000097;8.52e-31;5!CL:0000163;4.89e-17;9!CL:0000763;2.60e-14;100!CL:0002087;5.81e-10;104!CL:0000738;3.03e-09;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.10e-69,42;CL:0002057,1.10e-69,42;CL:0000839,2.16e-64,66;CL:0000557,2.29e-63,67;CL:0000766,4.43e-63,72;CL:0000473,2.15e-60,48;CL:0000234,2.15e-60,48;CL:0002194,2.23e-47,59;CL:0000576,2.23e-47,59;CL:0000040,2.23e-47,59;CL:0000559,2.23e-47,59;CL:0000763,8.29e-47,108;CL:0000049,8.29e-47,108;CL:0002009,1.07e-45,61;CL:0002031,2.89e-33,120;CL:0000738,4.57e-31,136;CL:0000097,6.71e-31,5;CL:0002028,6.71e-31,5;CL:0002032,1.17e-29,161;CL:0000837,1.17e-29,161;CL:0000037,3.42e-28,168;CL:0000988,1.76e-26,177;CL:0002087,3.24e-22,115;CL:0000163,4.29e-17,9;CL:0000134,2.29e-10,354;CL:0002320,4.74e-10,361;CL:0000219,6.16e-09,386;CL:0000048,1.43e-07,427;CL:0000723,2.20e-07,433;CL:0000034,3.86e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.24e-52;42!CL:0000049;3.61e-12;108 | |||
|ontology_enrichment_disease=DOID:8692!4.49e-12!31;DOID:1240!3.44e-10!39;DOID:2531!5.45e-08!51;DOID:0060083!5.45e-08!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.99e-48!80;UBERON:0002390!2.74e-46!102;UBERON:0003061!2.74e-46!102;UBERON:0001474!3.83e-44!86;UBERON:0002193!7.19e-41!112;UBERON:0004765!1.18e-35!101;UBERON:0001434!1.18e-35!101;UBERON:0002405!2.71e-34!115;UBERON:0002204!1.50e-16!167;UBERON:0002384!1.59e-15!375;UBERON:0003081!1.83e-14!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.43e-55,76;UBERON:0001474,5.90e-51,82;UBERON:0004765,5.24e-46,90;UBERON:0002405,2.28e-44,93;UBERON:0002390,7.42e-42,98;UBERON:0003061,7.42e-42,98;UBERON:0001434,6.39e-41,100;UBERON:0002193,1.60e-37,108;UBERON:0002204,1.96e-22,167;UBERON:0003081,1.67e-17,203;UBERON:0002384,1.28e-09,371;UBERON:0000926,2.53e-09,315;UBERON:0004120,2.53e-09,315;UBERON:0006603,2.53e-09,315 | |||
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|short_description=p2@CU678918 | |||
}} |
Revision as of 09:58, 11 September 2013
Short description: | p2@CU678918 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_CU678918_5end |
Coexpression cluster: | C728_Mast_CD14_Basophils_chorionic_immature_Monocytederived_acute |
Association with transcript: | -354bp_to_CU678918_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.10e-69 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.10e-69 | 42 |
myeloid lineage restricted progenitor cell | 2.16e-64 | 66 |
granulocyte monocyte progenitor cell | 2.29e-63 | 67 |
myeloid leukocyte | 4.43e-63 | 72 |
defensive cell | 2.15e-60 | 48 |
phagocyte | 2.15e-60 | 48 |
monopoietic cell | 2.23e-47 | 59 |
monocyte | 2.23e-47 | 59 |
monoblast | 2.23e-47 | 59 |
promonocyte | 2.23e-47 | 59 |
myeloid cell | 8.29e-47 | 108 |
common myeloid progenitor | 8.29e-47 | 108 |
macrophage dendritic cell progenitor | 1.07e-45 | 61 |
hematopoietic lineage restricted progenitor cell | 2.89e-33 | 120 |
leukocyte | 4.57e-31 | 136 |
mast cell | 6.71e-31 | 5 |
basophil mast progenitor cell | 6.71e-31 | 5 |
hematopoietic oligopotent progenitor cell | 1.17e-29 | 161 |
hematopoietic multipotent progenitor cell | 1.17e-29 | 161 |
hematopoietic stem cell | 3.42e-28 | 168 |
hematopoietic cell | 1.76e-26 | 177 |
nongranular leukocyte | 3.24e-22 | 115 |
endocrine cell | 4.29e-17 | 9 |
mesenchymal cell | 2.29e-10 | 354 |
connective tissue cell | 4.74e-10 | 361 |
motile cell | 6.16e-09 | 386 |
multi fate stem cell | 1.43e-07 | 427 |
somatic stem cell | 2.20e-07 | 433 |
stem cell | 3.86e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.43e-55 | 76 |
bone element | 5.90e-51 | 82 |
skeletal element | 5.24e-46 | 90 |
immune system | 2.28e-44 | 93 |
hematopoietic system | 7.42e-42 | 98 |
blood island | 7.42e-42 | 98 |
skeletal system | 6.39e-41 | 100 |
hemolymphoid system | 1.60e-37 | 108 |
musculoskeletal system | 1.96e-22 | 167 |
lateral plate mesoderm | 1.67e-17 | 203 |
connective tissue | 1.28e-09 | 371 |
mesoderm | 2.53e-09 | 315 |
mesoderm-derived structure | 2.53e-09 | 315 |
presumptive mesoderm | 2.53e-09 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.