FFCP PHASE1:Hg19::chr16:89660493..89660504,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C121|description=CAGE_peak_at_chr16:89660493..89660504,+|id=chr16:89660493..89660504,+|ontology_enrichment_celltype=CL:0000791!8.35e-30!18;CL:0000789!8.35e-30!18;CL:0002420!8.35e-30!18;CL:0002419!8.35e-30!18;CL:0000790!8.35e-30!18;CL:0000084!1.91e-28!25;CL:0000827!1.91e-28!25;CL:0000625!4.87e-22!11;CL:0000838!8.44e-14!52;CL:0000542!1.79e-13!53;CL:0000051!1.79e-13!53;CL:0000738!1.87e-12!140;CL:0002087!1.70e-10!119;CL:0000037!5.90e-10!172;CL:0000566!5.90e-10!172;CL:0002031!7.46e-10!124;CL:0000893!1.54e-09!2;CL:0002489!1.54e-09!2;CL:0000809!1.54e-09!2;CL:0000808!1.54e-09!2;CL:0000894!1.54e-09!2;CL:0000806!1.54e-09!2;CL:0000807!1.54e-09!2;CL:0000805!1.54e-09!2;CL:0002425!1.54e-09!2;CL:0000988!4.48e-09!182;CL:0002032!1.15e-08!165;CL:0000837!1.15e-08!165|ontology_enrichment_celltype_v019=CL:0002127;1.07e-23;1!CL:0000911;1.07e-23;1!CL:0000814;1.07e-23;1!CL:0000084;1.56e-14;25!CL:0000791;1.07e-11;18!CL:0000789;1.07e-11;18!CL:0002419;1.07e-11;18!CL:0000625;6.35e-09;11|ontology_enrichment_celltype_v019_2=CL:0002127,1.07e-23,1;CL:0000914,1.07e-23,1;CL:0000911,1.07e-23,1;CL:0000814,1.07e-23,1;CL:0002042,1.07e-23,1;CL:0002039,1.07e-23,1;CL:0002040,1.07e-23,1;CL:0002041,1.07e-23,1;CL:0000084,1.58e-14,25;CL:0000827,1.58e-14,25;CL:0000893,1.48e-12,2;CL:0002489,1.48e-12,2;CL:0000809,1.48e-12,2;CL:0000808,1.48e-12,2;CL:0000894,1.48e-12,2;CL:0000806,1.48e-12,2;CL:0000807,1.48e-12,2;CL:0000805,1.48e-12,2;CL:0002425,1.48e-12,2;CL:0000791,1.07e-11,18;CL:0000789,1.07e-11,18;CL:0002420,1.07e-11,18;CL:0002419,1.07e-11,18;CL:0000790,1.07e-11,18;CL:0000625,6.35e-09,11;CL:0000838,3.56e-07,52;CL:0000542,4.81e-07,53;CL:0000051,4.81e-07,53|ontology_enrichment_development_v019=CL:0002425;1.48e-12;2!CL:0000790;1.07e-11;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002370!4.46e-17!4;UBERON:0005058!4.46e-17!4;UBERON:0009113!4.46e-17!4;UBERON:0003295!4.46e-17!4;UBERON:0005562!4.46e-17!4;UBERON:0003408!2.38e-14!10;UBERON:0003351!2.12e-11!6;UBERON:0000974!4.61e-10!10;UBERON:0001042!5.91e-10!10;UBERON:0009145!5.91e-10!10;UBERON:0004177!8.98e-10!7;UBERON:0006562!5.10e-09!11|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.50e-07,4;UBERON:0005058,6.50e-07,4;UBERON:0009113,6.50e-07,4;UBERON:0003295,6.50e-07,4;UBERON:0005562,6.50e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0.257575567634187,0,0,0,0,0,0,0.28769239232215,0.256160706529101,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.822405995998037,0,0.32592226663359,0,0,0.222820913770347,0,0.443067789167242,0,0.512365278902701,1.04047478047903,1.15106533222573,4.14525026678773,0.289803085735052,0,0,0,0.793165398882963,0.766440987203842,0.68725489096526,1.01207876807801,0,0.651083453856419,0,0.150575119077773,0.127986611154418,1.24930726552346,0.236777252044017,0.821127996921047,1.00803371612366,0.534880391567015,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.26800176769578,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04386596391473,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.398594520940089,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C121 | |||
|description=CAGE_peak_at_chr16:89660493..89660504,+ | |||
|id=chr16:89660493..89660504,+ | |||
|ontology_enrichment_celltype=CL:0000791!8.35e-30!18;CL:0000789!8.35e-30!18;CL:0002420!8.35e-30!18;CL:0002419!8.35e-30!18;CL:0000790!8.35e-30!18;CL:0000084!1.91e-28!25;CL:0000827!1.91e-28!25;CL:0000625!4.87e-22!11;CL:0000838!8.44e-14!52;CL:0000542!1.79e-13!53;CL:0000051!1.79e-13!53;CL:0000738!1.87e-12!140;CL:0002087!1.70e-10!119;CL:0000037!5.90e-10!172;CL:0000566!5.90e-10!172;CL:0002031!7.46e-10!124;CL:0000893!1.54e-09!2;CL:0002489!1.54e-09!2;CL:0000809!1.54e-09!2;CL:0000808!1.54e-09!2;CL:0000894!1.54e-09!2;CL:0000806!1.54e-09!2;CL:0000807!1.54e-09!2;CL:0000805!1.54e-09!2;CL:0002425!1.54e-09!2;CL:0000988!4.48e-09!182;CL:0002032!1.15e-08!165;CL:0000837!1.15e-08!165 | |||
|ontology_enrichment_celltype_v019=CL:0002127;1.07e-23;1!CL:0000911;1.07e-23;1!CL:0000814;1.07e-23;1!CL:0000084;1.56e-14;25!CL:0000791;1.07e-11;18!CL:0000789;1.07e-11;18!CL:0002419;1.07e-11;18!CL:0000625;6.35e-09;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,1.07e-23,1;CL:0000914,1.07e-23,1;CL:0000911,1.07e-23,1;CL:0000814,1.07e-23,1;CL:0002042,1.07e-23,1;CL:0002039,1.07e-23,1;CL:0002040,1.07e-23,1;CL:0002041,1.07e-23,1;CL:0000084,1.58e-14,25;CL:0000827,1.58e-14,25;CL:0000893,1.48e-12,2;CL:0002489,1.48e-12,2;CL:0000809,1.48e-12,2;CL:0000808,1.48e-12,2;CL:0000894,1.48e-12,2;CL:0000806,1.48e-12,2;CL:0000807,1.48e-12,2;CL:0000805,1.48e-12,2;CL:0002425,1.48e-12,2;CL:0000791,1.07e-11,18;CL:0000789,1.07e-11,18;CL:0002420,1.07e-11,18;CL:0002419,1.07e-11,18;CL:0000790,1.07e-11,18;CL:0000625,6.35e-09,11;CL:0000838,3.56e-07,52;CL:0000542,4.81e-07,53;CL:0000051,4.81e-07,53 | |||
|ontology_enrichment_development_v019=CL:0002425;1.48e-12;2!CL:0000790;1.07e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!4.46e-17!4;UBERON:0005058!4.46e-17!4;UBERON:0009113!4.46e-17!4;UBERON:0003295!4.46e-17!4;UBERON:0005562!4.46e-17!4;UBERON:0003408!2.38e-14!10;UBERON:0003351!2.12e-11!6;UBERON:0000974!4.61e-10!10;UBERON:0001042!5.91e-10!10;UBERON:0009145!5.91e-10!10;UBERON:0004177!8.98e-10!7;UBERON:0006562!5.10e-09!11 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.50e-07,4;UBERON:0005058,6.50e-07,4;UBERON:0009113,6.50e-07,4;UBERON:0003295,6.50e-07,4;UBERON:0005562,6.50e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0.257575567634187,0,0,0,0,0,0,0.28769239232215,0.256160706529101,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.822405995998037,0,0.32592226663359,0,0,0.222820913770347,0,0.443067789167242,0,0.512365278902701,1.04047478047903,1.15106533222573,4.14525026678773,0.289803085735052,0,0,0,0.793165398882963,0.766440987203842,0.68725489096526,1.01207876807801,0,0.651083453856419,0,0.150575119077773,0.127986611154418,1.24930726552346,0.236777252044017,0.821127996921047,1.00803371612366,0.534880391567015,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.26800176769578,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04386596391473,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.398594520940089,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.775066918032073,0.558672428662721,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |||
|short_description=p@chr16:89660493..89660504,+ | |||
}} |
Revision as of 12:06, 11 September 2013
Short description: | p@chr16:89660493..89660504, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr16:89660493..89660504, + |
Coexpression cluster: | C121_NK_Natural_CD8_CD4_anaplastic_chronic_B |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 1.07e-23 | 1 |
immature NK T cell | 1.07e-23 | 1 |
effector T cell | 1.07e-23 | 1 |
mature NK T cell | 1.07e-23 | 1 |
immature NK T cell stage IV | 1.07e-23 | 1 |
immature NK T cell stage I | 1.07e-23 | 1 |
immature NK T cell stage II | 1.07e-23 | 1 |
immature NK T cell stage III | 1.07e-23 | 1 |
T cell | 1.58e-14 | 25 |
pro-T cell | 1.58e-14 | 25 |
thymocyte | 1.48e-12 | 2 |
double negative thymocyte | 1.48e-12 | 2 |
double-positive, alpha-beta thymocyte | 1.48e-12 | 2 |
DN4 thymocyte | 1.48e-12 | 2 |
DN1 thymic pro-T cell | 1.48e-12 | 2 |
DN2 thymocyte | 1.48e-12 | 2 |
DN3 thymocyte | 1.48e-12 | 2 |
immature single positive thymocyte | 1.48e-12 | 2 |
early T lineage precursor | 1.48e-12 | 2 |
mature alpha-beta T cell | 1.07e-11 | 18 |
alpha-beta T cell | 1.07e-11 | 18 |
immature T cell | 1.07e-11 | 18 |
mature T cell | 1.07e-11 | 18 |
immature alpha-beta T cell | 1.07e-11 | 18 |
CD8-positive, alpha-beta T cell | 6.35e-09 | 11 |
lymphoid lineage restricted progenitor cell | 3.56e-07 | 52 |
lymphocyte | 4.81e-07 | 53 |
common lymphoid progenitor | 4.81e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.50e-07 | 4 |
hemolymphoid system gland | 6.50e-07 | 4 |
thymic region | 6.50e-07 | 4 |
pharyngeal gland | 6.50e-07 | 4 |
thymus primordium | 6.50e-07 | 4 |
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