FFCP PHASE1:Hg19::chr19:1450095..1450102,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10297|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24036|TSSclassifier=S|UniProt=O95996,B5MDS5|association_with_transcript=-45bp_to_ENST00000233607,ENST00000238483,NM_005883,uc002lsr.1,uc002lss.1_5end|coexpression_cluster_id=C1367|description=CAGE_peak_4_at_APC2_5end|id=chr19:1450095..1450102,+|ontology_enrichment_celltype=CL:0000047!3.57e-09!8|ontology_enrichment_celltype_v019=CL:0000047;7.03e-08;2|ontology_enrichment_celltype_v019_2=CL:0000047,1.76e-07,8|ontology_enrichment_development_v019=UBERON:0005425;4.72e-15;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.32e-74!94;UBERON:0001016!6.32e-74!94;UBERON:0001017!1.34e-73!82;UBERON:0005743!1.23e-72!86;UBERON:0001049!2.20e-72!57;UBERON:0005068!2.20e-72!57;UBERON:0006241!2.20e-72!57;UBERON:0007135!2.20e-72!57;UBERON:0002616!6.53e-62!59;UBERON:0000955!3.52e-60!69;UBERON:0006238!3.52e-60!69;UBERON:0002020!1.66e-55!34;UBERON:0003528!1.66e-55!34;UBERON:0001893!3.10e-55!34;UBERON:0003075!1.27e-54!86;UBERON:0007284!1.27e-54!86;UBERON:0002791!6.66e-53!33;UBERON:0002780!3.77e-52!41;UBERON:0001890!3.77e-52!41;UBERON:0006240!3.77e-52!41;UBERON:0002346!1.05e-51!90;UBERON:0003080!9.61e-51!42;UBERON:0001869!3.75e-50!32;UBERON:0003056!3.95e-40!61;UBERON:0002619!4.08e-38!22;UBERON:0001950!1.27e-37!20;UBERON:0004121!1.70e-37!169;UBERON:0000956!7.99e-37!25;UBERON:0000203!7.99e-37!25;UBERON:0000924!2.44e-36!173;UBERON:0006601!2.44e-36!173;UBERON:0000033!1.17e-34!123;UBERON:0000153!1.53e-32!129;UBERON:0007811!1.53e-32!129;UBERON:0007023!5.74e-31!115;UBERON:0003076!6.78e-22!15;UBERON:0003057!6.78e-22!15;UBERON:0004732!4.13e-21!13;UBERON:0002308!2.67e-20!9;UBERON:0000125!2.67e-20!9;UBERON:0004733!2.28e-18!12;UBERON:0002028!2.28e-18!12;UBERON:0007277!2.28e-18!12;UBERON:0002298!2.93e-17!8;UBERON:0000025!5.61e-16!194;UBERON:0002420!1.85e-15!9;UBERON:0007245!1.85e-15!9;UBERON:0010009!1.85e-15!9;UBERON:0010011!1.85e-15!9;UBERON:0000454!1.85e-15!9;UBERON:0009663!5.36e-15!7;UBERON:0001872!7.19e-15!5;UBERON:0001871!3.04e-13!7;UBERON:0000064!9.45e-13!219;UBERON:0000200!4.84e-12!6;UBERON:0004111!1.30e-11!241;UBERON:0002680!1.83e-11!9;UBERON:0001895!1.83e-11!9;UBERON:0010092!1.83e-11!9;UBERON:0002021!1.87e-10!5;UBERON:0000988!7.29e-10!3;UBERON:0000483!8.10e-10!309;UBERON:0000119!1.29e-09!312;UBERON:0006331!1.31e-09!3;UBERON:0002771!1.81e-09!3;UBERON:0001896!3.05e-09!3;UBERON:0005290!3.05e-09!3;UBERON:0010096!3.05e-09!3;UBERON:0000477!7.02e-09!286;UBERON:0000475!2.03e-08!365;UBERON:0000922!5.42e-08!612;UBERON:0005162!1.93e-07!2;UBERON:0000122!1.93e-07!2;UBERON:0000369!2.65e-07!4;UBERON:0002435!2.65e-07!4;UBERON:0000204!2.65e-07!4;UBERON:0010082!2.65e-07!4;UBERON:0001875!3.34e-07!2;UBERON:0006514!3.34e-07!2;UBERON:0000923!3.89e-07!604;UBERON:0005291!3.89e-07!604;UBERON:0006598!3.89e-07!604;UBERON:0002532!3.89e-07!604;UBERON:0002050!4.23e-07!605;UBERON:0005423!4.23e-07!605;UBERON:0002148!4.25e-07!2;UBERON:0009662!4.25e-07!2;UBERON:0000467!6.13e-07!625;UBERON:0000480!6.65e-07!626|ontology_enrichment_uberon_v019=UBERON:0002021;2.37e-24;5!UBERON:0001950;1.93e-22;20!UBERON:0002619;1.79e-20;22!UBERON:0003528;1.64e-18;34!UBERON:0002020;1.64e-18;34!UBERON:0000956;4.36e-18;25!UBERON:0000203;4.36e-18;25!UBERON:0002791;1.61e-17;32!UBERON:0001869;1.61e-17;32!UBERON:0000941;4.72e-15;1!UBERON:0001785;4.72e-15;1!UBERON:0002464;4.72e-15;1!UBERON:0004904;4.72e-15;1!UBERON:0001021;4.72e-15;1!UBERON:0001893;1.38e-14;34!UBERON:0001016;5.63e-13;83!UBERON:0002780;3.94e-12;41!UBERON:0001890;3.94e-12;41!UBERON:0000955;6.57e-11;68!UBERON:0001017;1.03e-10;75!UBERON:0000073;6.70e-10;53!UBERON:0002616;6.70e-10;53!UBERON:0004732;8.15e-10;13!UBERON:0001871;1.56e-08;6!UBERON:0003714;3.56e-08;2!UBERON:0005162;3.56e-08;2!UBERON:0000122;3.56e-08;2!UBERON:0002148;7.03e-08;2!UBERON:0001875;7.03e-08;2!UBERON:0006331;7.03e-08;2!UBERON:0009662;7.03e-08;2!UBERON:0006514;7.03e-08;2!UBERON:0002680;9.37e-07;9!UBERON:0000125;9.37e-07;9!UBERON:0002308;9.37e-07;9!UBERON:0001895;9.37e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.14e-26,89;UBERON:0001017,2.08e-25,81;UBERON:0002021,3.13e-24,5;UBERON:0003528,2.60e-23,34;UBERON:0002020,2.60e-23,34;UBERON:0001950,2.05e-22,20;UBERON:0001049,5.11e-22,56;UBERON:0005068,5.11e-22,56;UBERON:0006241,5.11e-22,56;UBERON:0007135,5.11e-22,56;UBERON:0002619,1.89e-20,22;UBERON:0002791,4.53e-19,32;UBERON:0001869,4.53e-19,32;UBERON:0000073,7.99e-19,53;UBERON:0002616,7.99e-19,53;UBERON:0000956,4.57e-18,25;UBERON:0000203,4.57e-18,25;UBERON:0003075,4.84e-18,82;UBERON:0007284,4.84e-18,82;UBERON:0001893,5.91e-18,34;UBERON:0000955,8.91e-18,68;UBERON:0006238,8.91e-18,68;UBERON:0002346,3.72e-17,86;UBERON:0000941,4.73e-15,1;UBERON:0001785,4.73e-15,1;UBERON:0002464,4.73e-15,1;UBERON:0004904,4.73e-15,1;UBERON:0001021,4.73e-15,1;UBERON:0003902,4.73e-15,1;UBERON:0005425,4.73e-15,1;UBERON:0002780,6.99e-15,41;UBERON:0001890,6.99e-15,41;UBERON:0003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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10297 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24036 | |||
|TSSclassifier=S | |||
|UniProt=O95996,B5MDS5 | |||
|association_with_transcript=-45bp_to_ENST00000233607,ENST00000238483,NM_005883,uc002lsr.1,uc002lss.1_5end | |||
|coexpression_cluster_id=C1367 | |||
|description=CAGE_peak_4_at_APC2_5end | |||
|id=chr19:1450095..1450102,+ | |||
|ontology_enrichment_celltype=CL:0000047!3.57e-09!8 | |||
|ontology_enrichment_celltype_v019=CL:0000047;7.03e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.76e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0005425;4.72e-15;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p4@APC2 | |||
}} |
Revision as of 19:04, 11 September 2013
Short description: | p4@APC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_APC2_5end |
Coexpression cluster: | C1367_optic_extraskeletal_brain_rhabdomyosarcoma_substantia_corpus_thalamus |
Association with transcript: | -45bp_to_ENST00000233607, ENST00000238483, NM_005883, uc002lsr.1, uc002lss.1_5end |
EntrezGene: | APC2 |
HGNC: | 24036 |
UniProt: | O95996B5MDS5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.76e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.