FFCP PHASE1:Hg19::chr1:198607833..198607849,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5788|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9666|TSSclassifier=S|UniProt=P08575,Q0VAE8,B1ALS1|association_with_transcript=-287bp_to_NM_002838,NM_080921,NM_080923,uc001guq.2,uc001gur.1,uc001gus.1,uc001gut.1,uc009wze.1,uc009wzf.1,uc010ppg.1_5end|coexpression_cluster_id=C116|description=CAGE_peak_4_at_PTPRC_5end|id=chr1:198607833..198607849,+|ontology_enrichment_celltype=CL:0000542!1.14e-36!53;CL:0000051!1.14e-36!53;CL:0000838!5.30e-35!52;CL:0002087!5.05e-29!119;CL:0000037!2.43e-25!172;CL:0000566!2.43e-25!172;CL:0000738!3.69e-25!140;CL:0002032!1.53e-23!165;CL:0000837!1.53e-23!165;CL:0000988!4.51e-23!182;CL:0000791!1.86e-22!18;CL:0000789!1.86e-22!18;CL:0002420!1.86e-22!18;CL:0002419!1.86e-22!18;CL:0000790!1.86e-22!18;CL:0002031!5.96e-22!124;CL:0000084!2.08e-19!25;CL:0000827!2.08e-19!25;CL:0000625!5.92e-14!11;CL:0000945!8.98e-13!24;CL:0000826!8.98e-13!24;CL:0000624!9.87e-09!6|ontology_enrichment_celltype_v019=CL:0000785;1.55e-09;1!CL:0000222;1.55e-09;1!CL:0000819;1.55e-09;1!CL:0000945;2.19e-08;24|ontology_enrichment_celltype_v019_2=CL:0000819,1.32e-09,1;CL:0000945,2.21e-08,24;CL:0000826,2.21e-08,24;CL:0000838,8.15e-07,52|ontology_enrichment_development_v019=UBERON:0001045;3.53e-09;1|ontology_enrichment_disease=DOID:2531!1.87e-07!51;DOID:0060083!1.87e-07!51;DOID:0060058!2.06e-07!10|ontology_enrichment_disease_v019=DOID:4960;7.97e-10;1!DOID:0070004;7.97e-10;1!DOID:0060073;1.55e-09;1!DOID:8675;1.55e-09;1!DOID:0060058;8.34e-08;10|ontology_enrichment_disease_v019_2=DOID:4960,7.98e-10,1;DOID:0070004,7.98e-10,1;DOID:0060073,1.32e-09,1;DOID:8675,1.32e-09,1;DOID:0060058,8.54e-08,10|ontology_enrichment_uberon=UBERON:0004177!1.25e-09!7;UBERON:0002106!5.94e-07!3;UBERON:0004854!5.94e-07!3;UBERON:0009034!5.94e-07!3;UBERON:0002095!5.94e-07!3;UBERON:0004782!5.94e-07!3;UBERON:0003281!5.94e-07!3;UBERON:0009664!5.94e-07!3;UBERON:0002296!5.94e-07!3;UBERON:0005602!5.94e-07!3;UBERON:0001179!5.94e-07!3;UBERON:0006293!5.94e-07!3|ontology_enrichment_uberon_v019=UBERON:0002372;3.53e-09;1!UBERON:0000029;3.53e-09;1!UBERON:0001154;3.53e-09;1!UBERON:0001153;3.53e-09;1!UBERON:0009854;3.53e-09;1!UBERON:0001961;3.53e-09;1!UBERON:0001744;3.53e-09;1!UBERON:0001042;3.53e-09;1!UBERON:0001735;3.53e-09;1|ontology_enrichment_uberon_v019_2=UBERON:0002372,2.16e-09,1;UBERON:0001961,2.16e-09,1;UBERON:0001744,2.16e-09,1;UBERON:0001735,2.16e-09,1;UBERON:0001154,3.25e-09,1;UBERON:0001153,3.25e-09,1;UBERON:0001045,3.25e-09,1;UBERON:0000029,4.15e-09,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.738905305049512,0.865818594450472,0,0.767658796194425,0,0,0,0,1.62681121218633,0.710846162437108,0,0,0.200544447470142,0.217010870715852,0.223915474239924,0.32389366601898,0,0,0,0.242584061187816,0.464858073811369,0,0,0,0.256160706529101,0.236482229888585,0,0,1.35426486594342,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0.569212969109448,0,0.382273228125229,0,0,0.263384084775077,0.196709770113833,0.393010762749165,0.822405995998037,2.34061093546949,0.977766799900771,0.946895611469467,0,2.67385096524417,0.883817722424512,2.87994062958707,3.5204502289452,5.12365278902701,6.89314542067355,0.657751618414705,2.21080014228679,1.73881851441031,0.14828656316206,0.267540828089713,0,1.13309342697566,0,1.37450978193052,0.759059076058509,0.318565414324097,1.30216690771284,0,0.301150238155546,0.639933055772092,0,0.473554504088034,1.64225599384209,0.201606743224732,0.802320587350522,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.197030760201927,0.215627574859517,0.385029108839245,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0,0,0,0.929015875628594,0,0,0.318852545457645,0,0,0.423347165447766,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,1.67043704337145,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,1.65770349318689,0,0,5.90807066213134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.470940769185074,0,0,0.19606253431774,0,0,0.158936578980379,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,2.73682183823499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0.0882561266915003,0,0,0,0,0,0,0.2134529947393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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5788 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9666 | |||
|TSSclassifier=S | |||
|UniProt=P08575,Q0VAE8,B1ALS1 | |||
|association_with_transcript=-287bp_to_NM_002838,NM_080921,NM_080923,uc001guq.2,uc001gur.1,uc001gus.1,uc001gut.1,uc009wze.1,uc009wzf.1,uc010ppg.1_5end | |||
|coexpression_cluster_id=C116 | |||
|description=CAGE_peak_4_at_PTPRC_5end | |||
|id=chr1:198607833..198607849,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.14e-36!53;CL:0000051!1.14e-36!53;CL:0000838!5.30e-35!52;CL:0002087!5.05e-29!119;CL:0000037!2.43e-25!172;CL:0000566!2.43e-25!172;CL:0000738!3.69e-25!140;CL:0002032!1.53e-23!165;CL:0000837!1.53e-23!165;CL:0000988!4.51e-23!182;CL:0000791!1.86e-22!18;CL:0000789!1.86e-22!18;CL:0002420!1.86e-22!18;CL:0002419!1.86e-22!18;CL:0000790!1.86e-22!18;CL:0002031!5.96e-22!124;CL:0000084!2.08e-19!25;CL:0000827!2.08e-19!25;CL:0000625!5.92e-14!11;CL:0000945!8.98e-13!24;CL:0000826!8.98e-13!24;CL:0000624!9.87e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0000785;1.55e-09;1!CL:0000222;1.55e-09;1!CL:0000819;1.55e-09;1!CL:0000945;2.19e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000819,1.32e-09,1;CL:0000945,2.21e-08,24;CL:0000826,2.21e-08,24;CL:0000838,8.15e-07,52 | |||
|ontology_enrichment_development_v019=UBERON:0001045;3.53e-09;1 | |||
|ontology_enrichment_disease=DOID:2531!1.87e-07!51;DOID:0060083!1.87e-07!51;DOID:0060058!2.06e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:4960;7.97e-10;1!DOID:0070004;7.97e-10;1!DOID:0060073;1.55e-09;1!DOID:8675;1.55e-09;1!DOID:0060058;8.34e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:4960,7.98e-10,1;DOID:0070004,7.98e-10,1;DOID:0060073,1.32e-09,1;DOID:8675,1.32e-09,1;DOID:0060058,8.54e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0004177!1.25e-09!7;UBERON:0002106!5.94e-07!3;UBERON:0004854!5.94e-07!3;UBERON:0009034!5.94e-07!3;UBERON:0002095!5.94e-07!3;UBERON:0004782!5.94e-07!3;UBERON:0003281!5.94e-07!3;UBERON:0009664!5.94e-07!3;UBERON:0002296!5.94e-07!3;UBERON:0005602!5.94e-07!3;UBERON:0001179!5.94e-07!3;UBERON:0006293!5.94e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;3.53e-09;1!UBERON:0000029;3.53e-09;1!UBERON:0001154;3.53e-09;1!UBERON:0001153;3.53e-09;1!UBERON:0009854;3.53e-09;1!UBERON:0001961;3.53e-09;1!UBERON:0001744;3.53e-09;1!UBERON:0001042;3.53e-09;1!UBERON:0001735;3.53e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,2.16e-09,1;UBERON:0001961,2.16e-09,1;UBERON:0001744,2.16e-09,1;UBERON:0001735,2.16e-09,1;UBERON:0001154,3.25e-09,1;UBERON:0001153,3.25e-09,1;UBERON:0001045,3.25e-09,1;UBERON:0000029,4.15e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.738905305049512,0.865818594450472,0,0.767658796194425,0,0,0,0,1.62681121218633,0.710846162437108,0,0,0.200544447470142,0.217010870715852,0.223915474239924,0.32389366601898,0,0,0,0.242584061187816,0.464858073811369,0,0,0,0.256160706529101,0.236482229888585,0,0,1.35426486594342,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0.569212969109448,0,0.382273228125229,0,0,0.263384084775077,0.196709770113833,0.393010762749165,0.822405995998037,2.34061093546949,0.977766799900771,0.946895611469467,0,2.67385096524417,0.883817722424512,2.87994062958707,3.5204502289452,5.12365278902701,6.89314542067355,0.657751618414705,2.21080014228679,1.73881851441031,0.14828656316206,0.267540828089713,0,1.13309342697566,0,1.37450978193052,0.759059076058509,0.318565414324097,1.30216690771284,0,0.301150238155546,0.639933055772092,0,0.473554504088034,1.64225599384209,0.201606743224732,0.802320587350522,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.197030760201927,0.215627574859517,0.385029108839245,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0,0,0,0.929015875628594,0,0,0.318852545457645,0,0,0.423347165447766,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,1.67043704337145,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,1.65770349318689,0,0,5.90807066213134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.470940769185074,0,0,0.19606253431774,0,0,0.158936578980379,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,2.73682183823499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0.0882561266915003,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246277562248017,0,0,0,0,0,0,0,0,0.106787412567695,0,0,1.48849806543585,0.395223263795889,2.31405936923702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52369796457302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2214979660816,1.70254786070051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.921871900446234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540219106755613,0,0,0,0,0,0,0,0,1.69171052363736,0.128915775947154,0.799529247399431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.258355639344024,0.186224142887574,0,0,0,0.217716747896961,0,1.88585748440845,0.358611026963382,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p4@PTPRC | |||
}} |
Revision as of 02:36, 12 September 2013
Short description: | p4@PTPRC |
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Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_PTPRC_5end |
Coexpression cluster: | C116_myeloma_xeroderma_tonsil_CD19_spleen_lymph_trachea |
Association with transcript: | -287bp_to_NM_002838, NM_080921, NM_080923, uc001guq.2, uc001gur.1, uc001gus.1, uc001gut.1, uc009wze.1, uc009wzf.1, uc010ppg.1_5end |
EntrezGene: | PTPRC |
HGNC: | 9666 |
UniProt: | P08575Q0VAE8B1ALS1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B-1 B cell | 1.32e-09 | 1 |
lymphocyte of B lineage | 2.21e-08 | 24 |
pro-B cell | 2.21e-08 | 24 |
lymphoid lineage restricted progenitor cell | 8.15e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
tonsil | 2.16e-09 | 1 |
mucosa-associated lymphoid tissue | 2.16e-09 | 1 |
lymphoid tissue | 2.16e-09 | 1 |
tonsillar ring | 2.16e-09 | 1 |
vermiform appendix | 3.25e-09 | 1 |
caecum | 3.25e-09 | 1 |
midgut | 3.25e-09 | 1 |
lymph node | 4.15e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 7.98e-10 | 1 |
myeloma | 7.98e-10 | 1 |
lymphatic system cancer | 1.32e-09 | 1 |
lymphosarcoma | 1.32e-09 | 1 |
lymphoma | 8.54e-08 | 10 |
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