FFCP PHASE1:Hg19::chr1:35734406..35734456,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9202|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=13055|TSSclassifier=S|UniProt=Q5VZL5|association_with_transcript=-111bp_to_ENST00000314607,ENST00000373297,NM_005095,uc001byt.2,uc001byu.2,uc009vuu.2_5end|description=CAGE_peak_2_at_ZMYM4_5end|id=chr1:35734406..35734456,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.74e-16!94;UBERON:0001016!2.74e-16!94;UBERON:0005743!1.81e-14!86;UBERON:0001017!6.50e-14!82;UBERON:0000924!1.01e-11!173;UBERON:0006601!1.01e-11!173;UBERON:0000955!5.03e-11!69;UBERON:0006238!5.03e-11!69;UBERON:0004121!8.84e-11!169;UBERON:0002346!2.06e-10!90;UBERON:0007023!3.11e-10!115;UBERON:0003075!2.21e-09!86;UBERON:0007284!2.21e-09!86;UBERON:0001049!6.98e-09!57;UBERON:0005068!6.98e-09!57;UBERON:0006241!6.98e-09!57;UBERON:0007135!6.98e-09!57;UBERON:0002616!1.36e-08!59;UBERON:0000153!1.68e-08!129;UBERON:0007811!1.68e-08!129;UBERON:0000033!3.76e-08!123;UBERON:0003080!1.76e-07!42;UBERON:0002780!3.98e-07!41;UBERON:0001890!3.98e-07!41;UBERON:0006240!3.98e-07!41|ontology_enrichment_uberon_v019=UBERON:0000922;1.26e-07;49|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.49e-15,89;UBERON:0001017,1.62e-13,81;UBERON:0011216,3.79e-11,223;UBERON:0004121,4.69e-11,171;UBERON:0000924,4.69e-11,171;UBERON:0006601,4.69e-11,171;UBERON:0000955,1.27e-10,68;UBERON:0006238,1.27e-10,68;UBERON:0007023,5.35e-10,114;UBERON:0002346,1.74e-09,86;UBERON:0010314,1.39e-08,132;UBERON:0003075,1.78e-08,82;UBERON:0007284,1.78e-08,82;UBERON:0001049,1.78e-08,56;UBERON:0005068,1.78e-08,56;UBERON:0006241,1.78e-08,56;UBERON:0007135,1.78e-08,56;UBERON:0000073,9.83e-08,53;UBERON:0002616,9.83e-08,53;UBERON:0002780,5.98e-07,41;UBERON:0001890,5.98e-07,41;UBERON:0003080,5.98e-07,41;UBERON:0006240,5.98e-07,41|phase1_expression=2.54349730978779,1.49870366723688,3.66481450649525,2.00146596706261,2.23480547213644,1.74467704820074,2.53299878168311,0.631719873426831,2.61185628199839,0.737201809504527,1.39560233594486,1.52908960491121,1.31883489114227,3.46545788288131,1.98838425436749,0,3.61616716814386,1.46062018077475,1.46379839637152,1.72369481307503,2.04000691244253,2.19418305034661,5.72471974262113,3.28498620174922,3.13856598987007,1.06978768047132,1.80621296789881,1.25937250101887,0.786728553697808,1.53531759238885,0.619264493264304,0.919421224478927,0.90361775633475,1.10926203050036,5.03536803771961,3.55423081218554,2.34880351467878,0.553995408531877,1.20326668482085,1.30206522429511,3.80656306207871,1.94336199611388,2.06060454107349,1.30858414901608,3.02300754951048,0.970336244751265,0.232429036905685,1.6446715520873,0.309706370895104,0.28769239232215,1.0246428261164,1.41889337933151,0,1.93645405075148,2.70852973188684,1.31769637679823,1.91034305040492,1.12361742222542,1.22433556948361,3.20929027076094,1.91801137739712,1.31940520074686,1.39624560335142,1.70489900213078,0.870627715885752,0.56738522469114,1.86846674698672,2.00998932205395,1.0429658368404,0.434377689410233,1.21079900526674,1.10483290796269,0.949387162322653,0.422510572623884,0.425208599930087,0.628975936525128,0.336985893439485,0.450530678524519,1.28580469357664,0.855038231223746,0.59675003159727,0.182664153764634,3.51992488922645,1.63841583378639,1.77901850772711,2.56038133539904,1.60158394814405,2.87376219977242,0,2.86216126360609,1.70763890732835,0,2.6759125968766,7.93027971474155,5.04457706683382,1.84368859342554,1.180258620683,0.786021525498329,0.822405995998037,0.334372990781356,0.32592226663359,1.4203434172042,1.94826728407911,0.668462741311041,0.294605907474837,0.221533894583621,1.35401931882508,0.640456598628376,0.130059347559878,0.493313713811028,0.276350017785848,0.289803085735052,1.92772532110679,1.60524496853828,0,0.793165398882963,1.14966148080576,0.68725489096526,1.26509846009751,0.637130828648193,0.651083453856419,0.950452044448374,0.903450714466637,1.53583933385302,0,0.710331756132051,1.64225599384209,0.604820229674197,0.267440195783507,0.868946423296794,7.31420598941885,4.02420515822182,3.70801429346238,1.44575660953827,1.50401373190767,1.73815822752988,0,0.973269740605272,4.06499713805492,3.1042115644759,4.12823492757692,5.6975897841505,0,0.370784442784429,1.29818957461873,2.96020553408754,1.72845348674525,5.24679373471752,3.43196946468077,3.34311751196608,1.39133685156694,0.860234595106124,1.04142150482278,0.56530794192401,0.419499436209906,2.20094433552054,1.04497483268405,3.6178346283706,2.84613010149368,2.00832367658802,1.20848795132744,0,1.95249646038536,3.30896772311282,0,3.21479021822687,3.14341121676638,1.91439516821648,3.06633274931766,1.89853131913626,1.83201743930407,0,0,0,3.97577561356255,1.77282716330412,1.85372853138506,2.58152958673932,1.77334191099179,4.48542080113846,5.33744978648525,2.4666754841716,7.78027588499416,2.55950276932407,3.43269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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9202 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13055 | |||
|TSSclassifier=S | |||
|UniProt=Q5VZL5 | |||
|association_with_transcript=-111bp_to_ENST00000314607,ENST00000373297,NM_005095,uc001byt.2,uc001byu.2,uc009vuu.2_5end | |||
|description=CAGE_peak_2_at_ZMYM4_5end | |||
|id=chr1:35734406..35734456,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.74e-16!94;UBERON:0001016!2.74e-16!94;UBERON:0005743!1.81e-14!86;UBERON:0001017!6.50e-14!82;UBERON:0000924!1.01e-11!173;UBERON:0006601!1.01e-11!173;UBERON:0000955!5.03e-11!69;UBERON:0006238!5.03e-11!69;UBERON:0004121!8.84e-11!169;UBERON:0002346!2.06e-10!90;UBERON:0007023!3.11e-10!115;UBERON:0003075!2.21e-09!86;UBERON:0007284!2.21e-09!86;UBERON:0001049!6.98e-09!57;UBERON:0005068!6.98e-09!57;UBERON:0006241!6.98e-09!57;UBERON:0007135!6.98e-09!57;UBERON:0002616!1.36e-08!59;UBERON:0000153!1.68e-08!129;UBERON:0007811!1.68e-08!129;UBERON:0000033!3.76e-08!123;UBERON:0003080!1.76e-07!42;UBERON:0002780!3.98e-07!41;UBERON:0001890!3.98e-07!41;UBERON:0006240!3.98e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.26e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.49e-15,89;UBERON:0001017,1.62e-13,81;UBERON:0011216,3.79e-11,223;UBERON:0004121,4.69e-11,171;UBERON:0000924,4.69e-11,171;UBERON:0006601,4.69e-11,171;UBERON:0000955,1.27e-10,68;UBERON:0006238,1.27e-10,68;UBERON:0007023,5.35e-10,114;UBERON:0002346,1.74e-09,86;UBERON:0010314,1.39e-08,132;UBERON:0003075,1.78e-08,82;UBERON:0007284,1.78e-08,82;UBERON:0001049,1.78e-08,56;UBERON:0005068,1.78e-08,56;UBERON:0006241,1.78e-08,56;UBERON:0007135,1.78e-08,56;UBERON:0000073,9.83e-08,53;UBERON:0002616,9.83e-08,53;UBERON:0002780,5.98e-07,41;UBERON:0001890,5.98e-07,41;UBERON:0003080,5.98e-07,41;UBERON:0006240,5.98e-07,41 | |||
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| |||
|short_description=p2@ZMYM4 | |||
}} |
Revision as of 05:26, 12 September 2013
Short description: | p2@ZMYM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_ZMYM4_5end |
Coexpression cluster: | NA |
Association with transcript: | -111bp_to_ENST00000314607, ENST00000373297, NM_005095, uc001byt.2, uc001byu.2, uc009vuu.2_5end |
EntrezGene: | ZMYM4 |
HGNC: | 13055 |
UniProt: | Q5VZL5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 2.49e-15 | 89 |
central nervous system | 1.62e-13 | 81 |
organ system subdivision | 3.79e-11 | 223 |
ectoderm-derived structure | 4.69e-11 | 171 |
ectoderm | 4.69e-11 | 171 |
presumptive ectoderm | 4.69e-11 | 171 |
brain | 1.27e-10 | 68 |
future brain | 1.27e-10 | 68 |
adult organism | 5.35e-10 | 114 |
neurectoderm | 1.74e-09 | 86 |
structure with developmental contribution from neural crest | 1.39e-08 | 132 |
neural plate | 1.78e-08 | 82 |
presumptive neural plate | 1.78e-08 | 82 |
neural tube | 1.78e-08 | 56 |
neural rod | 1.78e-08 | 56 |
future spinal cord | 1.78e-08 | 56 |
neural keel | 1.78e-08 | 56 |
regional part of nervous system | 9.83e-08 | 53 |
regional part of brain | 9.83e-08 | 53 |
regional part of forebrain | 5.98e-07 | 41 |
forebrain | 5.98e-07 | 41 |
anterior neural tube | 5.98e-07 | 41 |
future forebrain | 5.98e-07 | 41 |
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