FFCP PHASE1:Hg19::chr2:45169143..45169167,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6496|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10889|TSSclassifier=S|UniProt=O95343|association_with_transcript=106bp_to_NM_005413,uc002run.1_5end|coexpression_cluster_id=C573|description=CAGE_peak_5_at_SIX3_5end|id=chr2:45169143..45169167,+|ontology_enrichment_celltype=CL:0002322!4.21e-08!5;CL:0000306!7.07e-08!4;CL:0002222!7.07e-08!4;CL:0002224!7.07e-08!4;CL:0002586!7.92e-07!3;CL:0000075!9.03e-07!27|ontology_enrichment_celltype_v019=CL:0000306;1.19e-14;4!CL:0002222;1.19e-14;4!CL:0002224;1.19e-14;4!CL:0002586;1.78e-12;3!CL:0000064;3.35e-12;3!CL:0000067;3.35e-12;3!CL:0005012;3.35e-12;3!CL:0002304;3.35e-12;3!CL:0000149;1.90e-09;4!CL:0000075;4.05e-09;27!CL:0000147;7.88e-09;14|ontology_enrichment_celltype_v019_2=CL:0000306,1.18e-14,4;CL:0002222,1.18e-14,4;CL:0002224,1.18e-14,4;CL:0002586,1.72e-12,3;CL:0000064,3.23e-12,3;CL:0000067,3.23e-12,3;CL:0005012,3.23e-12,3;CL:0002304,3.23e-12,3;CL:0000149,1.85e-09,4;CL:0000075,4.03e-09,27;CL:0000147,8.00e-09,14|ontology_enrichment_development_v019=UBERON:0010122;2.45e-08;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.23e-40!90;UBERON:0003056!1.17e-39!61;UBERON:0003075!6.84e-38!86;UBERON:0007284!6.84e-38!86;UBERON:0000073!1.94e-29!94;UBERON:0001016!1.94e-29!94;UBERON:0005743!1.05e-27!86;UBERON:0002780!7.35e-27!41;UBERON:0001890!7.35e-27!41;UBERON:0006240!7.35e-27!41;UBERON:0003080!5.22e-26!42;UBERON:0000924!1.30e-25!173;UBERON:0006601!1.30e-25!173;UBERON:0002616!1.68e-24!59;UBERON:0004121!1.67e-23!169;UBERON:0000955!1.90e-23!69;UBERON:0006238!1.90e-23!69;UBERON:0001017!5.26e-23!82;UBERON:0000033!1.71e-22!123;UBERON:0001049!2.14e-22!57;UBERON:0005068!2.14e-22!57;UBERON:0006241!2.14e-22!57;UBERON:0007135!2.14e-22!57;UBERON:0000153!1.02e-21!129;UBERON:0007811!1.02e-21!129;UBERON:0002791!8.93e-21!33;UBERON:0001893!5.72e-20!34;UBERON:0007625!1.03e-19!11;UBERON:0002020!3.81e-18!34;UBERON:0003528!3.81e-18!34;UBERON:0001869!5.51e-18!32;UBERON:0000970!6.54e-16!20;UBERON:0002104!6.12e-15!21;UBERON:0000019!1.92e-14!19;UBERON:0000047!1.92e-14!19;UBERON:0004088!1.92e-14!19;UBERON:0003072!1.92e-14!19;UBERON:0003071!1.92e-14!19;UBERON:0004128!1.92e-14!19;UBERON:0000020!2.95e-13!23;UBERON:0001456!1.10e-12!21;UBERON:0001032!1.60e-12!24;UBERON:0004456!1.60e-12!24;UBERON:0009663!7.86e-12!7;UBERON:0002420!1.63e-11!9;UBERON:0007245!1.63e-11!9;UBERON:0010009!1.63e-11!9;UBERON:0010011!1.63e-11!9;UBERON:0000454!1.63e-11!9;UBERON:0000956!2.67e-11!25;UBERON:0000203!2.67e-11!25;UBERON:0007023!1.35e-10!115;UBERON:0000966!3.63e-10!5;UBERON:0005388!3.63e-10!5;UBERON:0001802!3.63e-10!5;UBERON:0002308!7.05e-09!9;UBERON:0000125!7.05e-09!9;UBERON:0001894!8.76e-09!7;UBERON:0006222!8.76e-09!7;UBERON:0002619!1.16e-08!22;UBERON:0000488!2.44e-08!4;UBERON:0001950!3.22e-08!20;UBERON:0005085!3.89e-08!29;UBERON:0000369!5.18e-08!4;UBERON:0002435!5.18e-08!4;UBERON:0000204!5.18e-08!4;UBERON:0010082!5.18e-08!4;UBERON:0000064!6.26e-08!219;UBERON:0010077!7.07e-08!4;UBERON:0005389!7.07e-08!4;UBERON:0000484!7.07e-08!4;UBERON:0002546!7.07e-08!4;UBERON:0000965!7.07e-08!4;UBERON:0001803!7.07e-08!4;UBERON:0003073!7.07e-08!4;UBERON:0005426!7.07e-08!4;UBERON:0000475!9.31e-08!365;UBERON:0000922!1.77e-07!612;UBERON:0000483!1.79e-07!309;UBERON:0001801!1.81e-07!14;UBERON:0000119!3.01e-07!312;UBERON:0002114!4.51e-07!12;UBERON:0002200!4.78e-07!11;UBERON:0006876!4.78e-07!11;UBERON:0001781!7.92e-07!3;UBERON:0001782!7.92e-07!3;UBERON:0005424!7.92e-07!3|ontology_enrichment_uberon_v019=UBERON:0007625;2.93e-39;11!UBERON:0000970;9.49e-34;20!UBERON:0002104;5.67e-32;21!UBERON:0000019;1.29e-30;19!UBERON:0000047;1.29e-30;19!UBERON:0004088;1.29e-30;19!UBERON:0010230;1.29e-30;19!UBERON:0000020;6.97e-29;23!UBERON:0001032;1.56e-27;24!UBERON:0004456;1.56e-27;24!UBERON:0001456;2.15e-27;21!UBERON:0000966;2.14e-19;5!UBERON:0005388;2.14e-19;5!UBERON:0001802;2.14e-19;5!UBERON:0002420;2.85e-18;9!UBERON:0007245;2.85e-18;9!UBERON:0010009;2.85e-18;9!UBERON:0010011;2.85e-18;9!UBERON:0000454;2.85e-18;9!UBERON:0009663;7.60e-18;7!UBERON:0001801;1.13e-15;14!UBERON:0000488;1.31e-15;4!UBERON:0000369;7.14e-15;4!UBERON:0002435;7.14e-15;4!UBERON:0000204;7.14e-15;4!UBERON:0010077;1.19e-14;4!UBERON:0005389;1.19e-14;4!UBERON:0000484;1.19e-14;4!UBERON:0000965;1.19e-14;4!UBERON:0001803;1.19e-14;4!UBERON:0000125;9.86e-14;9!UBERON:0002308;9.86e-14;9!UBERON:0001894;1.64e-12;7!UBERON:0001781;1.78e-12;3!UBERON:0001782;1.78e-12;3!UBERON:0001778;3.35e-12;3!UBERON:0001775;3.35e-12;3!UBERON:0010371;6.74e-12;31!UBERON:0005383;7.91e-12;3!UBERON:0005382;7.91e-12;3!UBERON:0002203;2.08e-10;6!UBERON:0001768;2.08e-10;6!UBERON:0002200;2.08e-10;6!UBERON:0002780;4.53e-09;41!UBERON:0001890;4.53e-09;41!UBERON:0000007;1.76e-08;2!UBERON:0001264;1.83e-08;10!UBERON:0001873;2.45e-08;2!UBERON:0006876;2.82e-08;11!UBERON:0001897;8.34e-08;2!UBERON:0010225;8.34e-08;2!UBERON:0001444;8.77e-08;48!UBERON:0001875;8.94e-08;2!UBERON:0006514;8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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6496 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10889 | |||
|TSSclassifier=S | |||
|UniProt=O95343 | |||
|association_with_transcript=106bp_to_NM_005413,uc002run.1_5end | |||
|coexpression_cluster_id=C573 | |||
|description=CAGE_peak_5_at_SIX3_5end | |||
|id=chr2:45169143..45169167,+ | |||
|ontology_enrichment_celltype=CL:0002322!4.21e-08!5;CL:0000306!7.07e-08!4;CL:0002222!7.07e-08!4;CL:0002224!7.07e-08!4;CL:0002586!7.92e-07!3;CL:0000075!9.03e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000306;1.19e-14;4!CL:0002222;1.19e-14;4!CL:0002224;1.19e-14;4!CL:0002586;1.78e-12;3!CL:0000064;3.35e-12;3!CL:0000067;3.35e-12;3!CL:0005012;3.35e-12;3!CL:0002304;3.35e-12;3!CL:0000149;1.90e-09;4!CL:0000075;4.05e-09;27!CL:0000147;7.88e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,1.18e-14,4;CL:0002222,1.18e-14,4;CL:0002224,1.18e-14,4;CL:0002586,1.72e-12,3;CL:0000064,3.23e-12,3;CL:0000067,3.23e-12,3;CL:0005012,3.23e-12,3;CL:0002304,3.23e-12,3;CL:0000149,1.85e-09,4;CL:0000075,4.03e-09,27;CL:0000147,8.00e-09,14 | |||
|ontology_enrichment_development_v019=UBERON:0010122;2.45e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p5@SIX3 | |||
}} |
Revision as of 18:45, 12 September 2013
Short description: | p5@SIX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_SIX3_5end |
Coexpression cluster: | C573_Lens_small_retina_Ciliary_Retinal_eye_putamen |
Association with transcript: | 106bp_to_NM_005413, uc002run.1_5end |
EntrezGene: | SIX3 |
HGNC: | 10889 |
UniProt: | O95343 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 1.18e-14 | 4 |
vertebrate lens cell | 1.18e-14 | 4 |
lens epithelial cell | 1.18e-14 | 4 |
retinal pigment epithelial cell | 1.72e-12 | 3 |
ciliated cell | 3.23e-12 | 3 |
ciliated epithelial cell | 3.23e-12 | 3 |
multi-ciliated epithelial cell | 3.23e-12 | 3 |
non-pigmented ciliary epithelial cell | 3.23e-12 | 3 |
visual pigment cell | 1.85e-09 | 4 |
columnar/cuboidal epithelial cell | 4.03e-09 | 27 |
pigment cell | 8.00e-09 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.