FFCP PHASE1:Hg19::chr3:119182453..119182498,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55254|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25600|TSSclassifier=S|UniProt=C9JYN8,F8WAU1,C9K0C7,Q9NV64|association_with_transcript=0bp_to_ENST00000461654,ENST00000482162,ENST00000490099,ENST00000491685,NM_018266,uc003eck.1,uc003ecl.1_5end|description=CAGE_peak_1_at_TMEM39A_5end|id=chr3:119182453..119182498,-|ontology_enrichment_celltype=CL:0000048!3.62e-11!430;CL:0000012!9.87e-11!682;CL:0000057!1.29e-10!75;CL:0000034!2.11e-10!444;CL:0000723!2.26e-10!436;CL:0000548!3.91e-10!679;CL:0000004!3.91e-10!679;CL:0000255!3.91e-10!679;CL:0002320!4.41e-10!365;CL:0000144!9.82e-10!625;CL:0000134!1.59e-09!358;CL:0002371!1.68e-08!591;CL:0000055!3.56e-08!180;CL:0000003!5.99e-08!722;CL:0000219!4.96e-07!390|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000048,1.20e-11,427;CL:0000034,7.41e-11,441;CL:0002320,7.80e-11,361;CL:0000723,7.90e-11,433;CL:0000057,1.29e-10,76;CL:0000134,2.95e-10,354;CL:0000219,1.26e-07,386|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002384!8.08e-10!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.49e-10,371|phase1_expression=51.9600164713792,46.2457131604524,51.3074030909335,36.0263874071269,41.1204206873105,47.9786188255203,43.0609792886128,49.9058700007196,28.2080478455826,46.1979800622837,34.8900583986214,67.9352667324836,41.6751825600957,40.4715974179353,30.4885585669683,39.6671836406547,26.518559233055,20.4486825308465,21.4690431467823,49.7409074630223,43.2481465437816,37.9280212988486,25.475002854664,27.238010589504,28.7492644672098,28.5022003439858,27.0110939290322,29.437832211316,55.8577273125444,58.7258979088735,36.3817889792779,19.3078457140575,14.457884101356,51.0260534030167,27.5008562060071,26.301308010173,24.956037343462,55.9535362617196,54.7486341593487,42.7511415310228,35.1547294556681,40.1628145863535,40.1817885509331,18.9017710413434,24.1840603960838,27.4119989142232,25.1023359858139,25.903576945375,25.3959224133985,21.2892370318391,20.7490172288572,28.3778675866302,29.9928742240858,30.3377801284398,41.9822108442459,21.6478690473995,33.2945503070572,28.9893294934159,21.4258724659632,24.069677030707,24.9341479061626,20.4507806115764,21.143147707893,20.0325632750366,24.6677852834296,25.5323351111013,33.0095791967655,21.1048878815664,22.4237654920687,25.4110948304986,22.3997815974346,29.4622108790052,33.8614754561746,25.7731449300569,27.4259546954906,23.4817682969381,36.5068051226109,28.9841403184107,32.3058429261131,16.8157518807337,24.6656679726872,22.2850267592853,28.1593991138116,31.1299008419415,31.1328238852244,41.8195618115177,32.031678962881,32.1861366374511,29.7470192753188,34.3459351632731,39.8449078376614,34.0597569835145,34.7868637593958,42.2948251452883,68.9425532467289,33.4497787664348,71.4056465513214,54.6284960221339,43.7931192868955,26.0810932809458,46.932806395237,39.2961678759829,33.1205438293449,44.3413618402991,41.8340388614269,35.666957027963,39.2665602459273,23.4407115097986,26.1419288595355,34.038646252961,38.6890024900188,35.0661733739414,44.3376823854561,42.003910010085,41.8142095219907,34.5593495227577,42.9206952834152,42.2661757943635,44.0254264113935,32.1751068467338,26.6944216081132,25.6622052001061,38.8483807220654,27.0051749535823,32.4819889036099,30.5442655136782,29.5606078891577,76.2073489389489,73.0111734488975,55.7573954948776,9.75227465255847,31.5229404060709,26.2118251779237,50.9629204862238,52.6404806167684,44.9024208778553,117.702320163563,84.187832562356,36.0177653395099,26.6075276955077,36.8027752054198,28.8808861472456,31.6936900814512,19.2807910247903,29.2092654289215,28.5572769170798,19.9436940778298,96.3502122193582,66.923404561275,111.06579289754,23.8514888840046,20.645630282547,25.688397118962,13.5673906061762,16.3604780121863,17.6075546841643,21.9444714863651,33.8525954511821,29.8843660656837,46.5261651742892,17.3216606356933,23.5684352772739,16.1080957981792,26.4717417849025,28.3549681758616,34.0231964762344,18.8604673005983,22.1844616552145,26.0638283692002,34.1735637444526,19.9689900884144,25.038279312852,15.511210565933,32.2709598585475,40.2547280873208,39.0021975926906,98.2476121634084,135.673721614189,29.792144104662,31.3979456079692,45.9020681637731,26.3934276806361,62.2422070799533,34.0818000336311,28.6058330448553,112.458568740184,54.7367128255999,73.3426081639783,30.5916875293714,35.3692529357559,23.1645454855292,34.9954805958419,28.9752570418955,30.8991774744947,49.813617786194,32.305425452995,44.0167827808761,61.7761485786668,44.7553141994188,93.7466202796167,45.272942934423,51.3425147559902,35.6587781635098,52.3651178265106,35.9961649122287,36.1655599042843,37.8599908444624,26.3162664931249,119.652887004471,74.53152869768,73.1165059000488,112.834252127735,57.7094163735258,131.654315963316,72.2133402566568,103.628667996137,55.3442189315608,86.3323507914872,75.48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046415,34.0796162104028,37.3234712845111,63.9314445788303,64.149923192334,39.0860045937043,29.6217071083004,66.218415624293,41.3212483520173,41.8178482689184,9.06400372063053,13.0381764707434,31.3149896461314,50.0282322850914,19.1830360038927,22.4814375932346,30.6813834206127,34.4485550218828,63.2157971286217,32.1550856797015,24.3870339621105,35.625208362145,39.9769701907294,17.1603825227734,36.2941882536504,9.42280642151737,24.060758426494,27.472622292921,29.3973908409923,24.2478508388022,48.5367896441036,42.3750501121699,47.8524555463162,16.5860589706375,50.070612814041,32.8651374710933,66.974475377063,20.9275791401119,31.7120840008301,11.4225703520737,17.0176769232747,45.4963082843244,56.5432427613462,43.9066847199847,49.7520546442357,29.7752762610786,22.2901766805939,40.7969173256827,37.1239340260814,62.5288728321412,15.8059227199933,26.8257067042841,28.6443479264945,42.8742608249886,15.7542193497168,19.6522692137601,30.2792254299393,37.8522446027347,22.6707073524381,39.1070700063905,37.0035146516024,38.8247665496806,39.2107346578945,23.0779752770779,30.1165304955047,43.3073700883798,41.4554347169669,45.5744688468038,59.2615795487894,62.648952030219,23.1686738744328,32.6963735667976,46.9281884806909,54.1529597730098,45.165475793047,29.2932980641626,29.1847000706988,22.1192259689231|short_description=p1@TMEM39A}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=55254 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25600 | |||
|TSSclassifier=S | |||
|UniProt=C9JYN8,F8WAU1,C9K0C7,Q9NV64 | |||
|association_with_transcript=0bp_to_ENST00000461654,ENST00000482162,ENST00000490099,ENST00000491685,NM_018266,uc003eck.1,uc003ecl.1_5end | |||
|description=CAGE_peak_1_at_TMEM39A_5end | |||
|id=chr3:119182453..119182498,- | |||
|ontology_enrichment_celltype=CL:0000048!3.62e-11!430;CL:0000012!9.87e-11!682;CL:0000057!1.29e-10!75;CL:0000034!2.11e-10!444;CL:0000723!2.26e-10!436;CL:0000548!3.91e-10!679;CL:0000004!3.91e-10!679;CL:0000255!3.91e-10!679;CL:0002320!4.41e-10!365;CL:0000144!9.82e-10!625;CL:0000134!1.59e-09!358;CL:0002371!1.68e-08!591;CL:0000055!3.56e-08!180;CL:0000003!5.99e-08!722;CL:0000219!4.96e-07!390 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.20e-11,427;CL:0000034,7.41e-11,441;CL:0002320,7.80e-11,361;CL:0000723,7.90e-11,433;CL:0000057,1.29e-10,76;CL:0000134,2.95e-10,354;CL:0000219,1.26e-07,386 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!8.08e-10!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.49e-10,371 | |||
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| |||
|short_description=p1@TMEM39A | |||
}} |
Revision as of 21:00, 12 September 2013
Short description: | p1@TMEM39A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TMEM39A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000461654, ENST00000482162, ENST00000490099, ENST00000491685, NM_018266, uc003eck.1, uc003ecl.1_5end |
EntrezGene: | TMEM39A |
HGNC: | 25600 |
UniProt: | C9JYN8F8WAU1C9K0C7Q9NV64 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.20e-11 | 427 |
stem cell | 7.41e-11 | 441 |
connective tissue cell | 7.80e-11 | 361 |
somatic stem cell | 7.90e-11 | 433 |
fibroblast | 1.29e-10 | 76 |
mesenchymal cell | 2.95e-10 | 354 |
motile cell | 1.26e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.49e-10 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.