FFCP PHASE1:Mm9::chr12:62624099..62624171,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=238205|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=0bp_to_ENSMUST00000130887,ENSMUST00000138980_5end|description=CAGE_peak_1_at_Lrfn5_5end|id=chr12:62624099..62624171,+|ontology_enrichment_celltype=CL:0000117!2.32e-15!23;CL:0000337!2.32e-15!23;CL:0000540!1.92e-08!33;CL:0000047!1.92e-08!33;CL:0000031!1.92e-08!33;CL:0000404!1.92e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.96e-21,23;CL:0000337,2.96e-21,23;CL:0000540,1.26e-13,33;CL:0000047,1.26e-13,33;CL:0000031,1.26e-13,33;CL:0000404,1.26e-13,33;CL:0000393,2.58e-10,39;CL:0000211,2.58e-10,39;CL:0000221,5.26e-09,44;CL:0000133,5.26e-09,44;CL:0002319,1.17e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.25e-25!52;UBERON:0005068!1.25e-25!52;UBERON:0006241!1.25e-25!52;UBERON:0007135!1.25e-25!52;UBERON:0000033!1.86e-24!63;UBERON:0000955!2.60e-24!50;UBERON:0006238!2.60e-24!50;UBERON:0002616!1.13e-23!49;UBERON:0002346!2.84e-22!71;UBERON:0003075!2.84e-22!71;UBERON:0007284!2.84e-22!71;UBERON:0003056!1.94e-21!49;UBERON:0000073!5.42e-21!75;UBERON:0001016!5.42e-21!75;UBERON:0002020!7.53e-21!34;UBERON:0001017!7.62e-21!73;UBERON:0005743!7.62e-21!73;UBERON:0003080!1.02e-20!40;UBERON:0002780!5.88e-20!39;UBERON:0001890!5.88e-20!39;UBERON:0006240!5.88e-20!39;UBERON:0004121!1.09e-18!102;UBERON:0000924!1.09e-18!102;UBERON:0006601!1.09e-18!102;UBERON:0002791!2.09e-17!29;UBERON:0003528!2.09e-17!29;UBERON:0001893!2.09e-17!29;UBERON:0000956!3.36e-12!21;UBERON:0001869!3.36e-12!21;UBERON:0000203!3.36e-12!21;UBERON:0007811!5.68e-12!86;UBERON:0000153!8.61e-12!94;UBERON:0002619!8.87e-10!17;UBERON:0002021!1.91e-09!10;UBERON:0000411!1.91e-09!10;UBERON:0001950!1.91e-09!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.28e-32,54;UBERON:0001049,2.54e-30,52;UBERON:0005068,2.54e-30,52;UBERON:0006241,2.54e-30,52;UBERON:0007135,2.54e-30,52;UBERON:0002020,6.84e-30,34;UBERON:0001017,3.50e-28,73;UBERON:0001016,5.88e-27,75;UBERON:0002346,1.34e-26,64;UBERON:0003075,1.34e-26,64;UBERON:0007284,1.34e-26,64;UBERON:0000955,2.49e-25,47;UBERON:0006238,2.49e-25,47;UBERON:0003528,6.05e-25,29;UBERON:0002791,6.05e-25,29;UBERON:0001893,6.05e-25,29;UBERON:0002616,1.78e-24,46;UBERON:0010371,1.57e-23,73;UBERON:0003080,1.02e-22,40;UBERON:0004121,3.11e-22,95;UBERON:0000924,3.11e-22,95;UBERON:0006601,3.11e-22,95;UBERON:0002780,1.07e-21,39;UBERON:0001890,1.07e-21,39;UBERON:0006240,1.07e-21,39;UBERON:0003056,4.12e-21,49;UBERON:0000956,1.80e-17,21;UBERON:0001869,1.80e-17,21;UBERON:0000203,1.80e-17,21;UBERON:0010314,2.35e-15,92;UBERON:0002619,5.34e-14,17;UBERON:0002021,8.26e-13,10;UBERON:0000411,8.26e-13,10;UBERON:0001950,8.26e-13,10;UBERON:0002420,1.44e-08,8;UBERON:0007245,1.44e-08,8;UBERON:0010009,1.44e-08,8;UBERON:0010011,1.44e-08,8;UBERON:0000454,1.44e-08,8;UBERON:0003076,6.04e-08,12;UBERON:0003057,6.04e-08,12;UBERON:0002240,6.08e-07,6;UBERON:0005174,6.08e-07,6;UBERON:0001137,6.08e-07,6;UBERON:0000025,7.96e-07,114|phase1_expression=2.88267924788629,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74190476664707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.05791152148994,4.7609188134483,11.4089652631112,0,0,0,0,0,0,0,5.28817022773236,6.75029691658453,4.83747411108179,9.71213346972932,9.49734726091938,4.40966877173835,2.68367318851062,3.67687514644008,18.7196997698961,16.4716666129892,14.2854075928306,7.78129097608144,6.67859798297591,8.85552729946492,10.3297709630511,11.8180148106653,14.6686317865738,11.7851434189467,12.2439645487229,10.4383689662168,0.151452386666368,0.377857800533928,0,0,0,0,0,0,0.280888840263504,0,0,0,1.12674735821344,0,0,0,0,0,0,0.79928715803342,0,0,0.693941307064543,0.304465478312141,0,0.150722640552623,0.23517741427141,0,0,0,0,0,0,0,0,3.22058876712702,5.65506108396329,0,0,0,0,16.3271796951257,13.7250180845588,9.1727677042391,22.2495129846114,27.6172693916757,15.9996794310861,16.8730913590468,0.611036183101898,0,0.252722758433675,0.210441855886474,0.130120442962704,0,0.540186389416048,2.26057226753573,1.2246569847239,0.640568601424249,1.3118241438362,3.10444044886819,0,0.189106080167819,0.703804496655795,0.43839146485515,1.39023624612799,0.348252166522167,0,1.79130840136644,0,0,0,0.207125772535502,0,0.180062061461015,0,0.196764231747404,0,0.232533944750408,0,0.116765342367169,0,0,0,0,0,0,19.9775451135921,8.84979666461846,0,0,0.426576501070468,0.232236671860439,0.38660238396628,0.201683524623343,0,0.190225626112559,0,0,0.251335208800269,0,0.19496408711912,0,0.216138049874694,0,0,0.228497025219458,0,0,0.193952487167626,0.140271639780637,0.126473074248515,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0,0.568474235311454,0.162964976442026,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,11.7201930691088,9.25972324078405,0,0,0,0,0,0,0,0,0,0,0,6.10510501201433,0.141940085208269,0.178065603667255,0.651547837414304,0.164970122972535,0,0,0,0.188605079755898,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,0.540183282093931,0.258717367565509,0.857348140126369,1.06404140185364,0.891844088010353,1.15184314421485,0.608929898229199,0,0,0,0,0.645857706783622,0.301564624640779,0.238744688006273,0,0,10.7546675166096,0,0.412773735926445,0,0,0,0,0,0.139951452323658,0,0,0.158167996790568,0.203319467126849,0.324016022465404,0,0.218362563746178,0.134864346384821,0.165306911450672,0,0,0,0,1.49516546043979,0.992750942742586,2.13896307178452,2.71235629303235,2.53434188236167,1.5256441023948,0.5208175393758,0.104859344425711,0,0,0,0,0.205421914329655,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,23.1548255472997,28.540164663445,18.3326564300607,25.7779773515531,33.5690434687615,23.4172108190807,27.0009000092722,23.4167025676595,19.4851235863208,30.0300980816056,0.103787347584177,1.19707462020309,1.02440163452481,1.21553358534147,0.838452650511929,1.2869045591501,2.22246727801615,1.64828045791115,1.92551525755089,3.53776096469316,3.04175159868288,1.69763707247469,0.936415074698824,2.43295579138503,2.1825478203133,4.28664322154766,2.54945517078682,1.73618298417335,0.824171801606613,2.79677948255355,1.02860775715625,1.59728225543404,2.14592570952589,2.18019624948493,2.1645157495526,2.28459441307527,1.82927972872773,1.05227884575137,1.90125759384206,5.05028044491965,1.77952527186261,2.36410757701352,0.818462086339379,1.08455788830176,1.35034627686799,4.49659040288303,1.40358965067245,0.644613162144895,0.956441660344217,0.220591419119515,0.231867835620421|short_description=p1@Lrfn5}} | ||
|EntrezGene=238205 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000130887,ENSMUST00000138980_5end | |||
|description=CAGE_peak_1_at_Lrfn5_5end | |||
|id=chr12:62624099..62624171,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.32e-15!23;CL:0000337!2.32e-15!23;CL:0000540!1.92e-08!33;CL:0000047!1.92e-08!33;CL:0000031!1.92e-08!33;CL:0000404!1.92e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.96e-21,23;CL:0000337,2.96e-21,23;CL:0000540,1.26e-13,33;CL:0000047,1.26e-13,33;CL:0000031,1.26e-13,33;CL:0000404,1.26e-13,33;CL:0000393,2.58e-10,39;CL:0000211,2.58e-10,39;CL:0000221,5.26e-09,44;CL:0000133,5.26e-09,44;CL:0002319,1.17e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.25e-25!52;UBERON:0005068!1.25e-25!52;UBERON:0006241!1.25e-25!52;UBERON:0007135!1.25e-25!52;UBERON:0000033!1.86e-24!63;UBERON:0000955!2.60e-24!50;UBERON:0006238!2.60e-24!50;UBERON:0002616!1.13e-23!49;UBERON:0002346!2.84e-22!71;UBERON:0003075!2.84e-22!71;UBERON:0007284!2.84e-22!71;UBERON:0003056!1.94e-21!49;UBERON:0000073!5.42e-21!75;UBERON:0001016!5.42e-21!75;UBERON:0002020!7.53e-21!34;UBERON:0001017!7.62e-21!73;UBERON:0005743!7.62e-21!73;UBERON:0003080!1.02e-20!40;UBERON:0002780!5.88e-20!39;UBERON:0001890!5.88e-20!39;UBERON:0006240!5.88e-20!39;UBERON:0004121!1.09e-18!102;UBERON:0000924!1.09e-18!102;UBERON:0006601!1.09e-18!102;UBERON:0002791!2.09e-17!29;UBERON:0003528!2.09e-17!29;UBERON:0001893!2.09e-17!29;UBERON:0000956!3.36e-12!21;UBERON:0001869!3.36e-12!21;UBERON:0000203!3.36e-12!21;UBERON:0007811!5.68e-12!86;UBERON:0000153!8.61e-12!94;UBERON:0002619!8.87e-10!17;UBERON:0002021!1.91e-09!10;UBERON:0000411!1.91e-09!10;UBERON:0001950!1.91e-09!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.28e-32,54;UBERON:0001049,2.54e-30,52;UBERON:0005068,2.54e-30,52;UBERON:0006241,2.54e-30,52;UBERON:0007135,2.54e-30,52;UBERON:0002020,6.84e-30,34;UBERON:0001017,3.50e-28,73;UBERON:0001016,5.88e-27,75;UBERON:0002346,1.34e-26,64;UBERON:0003075,1.34e-26,64;UBERON:0007284,1.34e-26,64;UBERON:0000955,2.49e-25,47;UBERON:0006238,2.49e-25,47;UBERON:0003528,6.05e-25,29;UBERON:0002791,6.05e-25,29;UBERON:0001893,6.05e-25,29;UBERON:0002616,1.78e-24,46;UBERON:0010371,1.57e-23,73;UBERON:0003080,1.02e-22,40;UBERON:0004121,3.11e-22,95;UBERON:0000924,3.11e-22,95;UBERON:0006601,3.11e-22,95;UBERON:0002780,1.07e-21,39;UBERON:0001890,1.07e-21,39;UBERON:0006240,1.07e-21,39;UBERON:0003056,4.12e-21,49;UBERON:0000956,1.80e-17,21;UBERON:0001869,1.80e-17,21;UBERON:0000203,1.80e-17,21;UBERON:0010314,2.35e-15,92;UBERON:0002619,5.34e-14,17;UBERON:0002021,8.26e-13,10;UBERON:0000411,8.26e-13,10;UBERON:0001950,8.26e-13,10;UBERON:0002420,1.44e-08,8;UBERON:0007245,1.44e-08,8;UBERON:0010009,1.44e-08,8;UBERON:0010011,1.44e-08,8;UBERON:0000454,1.44e-08,8;UBERON:0003076,6.04e-08,12;UBERON:0003057,6.04e-08,12;UBERON:0002240,6.08e-07,6;UBERON:0005174,6.08e-07,6;UBERON:0001137,6.08e-07,6;UBERON:0000025,7.96e-07,114 | |||
|phase1_expression=2.88267924788629,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74190476664707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.05791152148994,4.7609188134483,11.4089652631112,0,0,0,0,0,0,0,5.28817022773236,6.75029691658453,4.83747411108179,9.71213346972932,9.49734726091938,4.40966877173835,2.68367318851062,3.67687514644008,18.7196997698961,16.4716666129892,14.2854075928306,7.78129097608144,6.67859798297591,8.85552729946492,10.3297709630511,11.8180148106653,14.6686317865738,11.7851434189467,12.2439645487229,10.4383689662168,0.151452386666368,0.377857800533928,0,0,0,0,0,0,0.280888840263504,0,0,0,1.12674735821344,0,0,0,0,0,0,0.79928715803342,0,0,0.693941307064543,0.304465478312141,0,0.150722640552623,0.23517741427141,0,0,0,0,0,0,0,0,3.22058876712702,5.65506108396329,0,0,0,0,16.3271796951257,13.7250180845588,9.1727677042391,22.2495129846114,27.6172693916757,15.9996794310861,16.8730913590468,0.611036183101898,0,0.252722758433675,0.210441855886474,0.130120442962704,0,0.540186389416048,2.26057226753573,1.2246569847239,0.640568601424249,1.3118241438362,3.10444044886819,0,0.189106080167819,0.703804496655795,0.43839146485515,1.39023624612799,0.348252166522167,0,1.79130840136644,0,0,0,0.207125772535502,0,0.180062061461015,0,0.196764231747404,0,0.232533944750408,0,0.116765342367169,0,0,0,0,0,0,19.9775451135921,8.84979666461846,0,0,0.426576501070468,0.232236671860439,0.38660238396628,0.201683524623343,0,0.190225626112559,0,0,0.251335208800269,0,0.19496408711912,0,0.216138049874694,0,0,0.228497025219458,0,0,0.193952487167626,0.140271639780637,0.126473074248515,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0,0.568474235311454,0.162964976442026,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,11.7201930691088,9.25972324078405,0,0,0,0,0,0,0,0,0,0,0,6.10510501201433,0.141940085208269,0.178065603667255,0.651547837414304,0.164970122972535,0,0,0,0.188605079755898,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,0.540183282093931,0.258717367565509,0.857348140126369,1.06404140185364,0.891844088010353,1.15184314421485,0.608929898229199,0,0,0,0,0.645857706783622,0.301564624640779,0.238744688006273,0,0,10.7546675166096,0,0.412773735926445,0,0,0,0,0,0.139951452323658,0,0,0.158167996790568,0.203319467126849,0.324016022465404,0,0.218362563746178,0.134864346384821,0.165306911450672,0,0,0,0,1.49516546043979,0.992750942742586,2.13896307178452,2.71235629303235,2.53434188236167,1.5256441023948,0.5208175393758,0.104859344425711,0,0,0,0,0.205421914329655,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,23.1548255472997,28.540164663445,18.3326564300607,25.7779773515531,33.5690434687615,23.4172108190807,27.0009000092722,23.4167025676595,19.4851235863208,30.0300980816056,0.103787347584177,1.19707462020309,1.02440163452481,1.21553358534147,0.838452650511929,1.2869045591501,2.22246727801615,1.64828045791115,1.92551525755089,3.53776096469316,3.04175159868288,1.69763707247469,0.936415074698824,2.43295579138503,2.1825478203133,4.28664322154766,2.54945517078682,1.73618298417335,0.824171801606613,2.79677948255355,1.02860775715625,1.59728225543404,2.14592570952589,2.18019624948493,2.1645157495526,2.28459441307527,1.82927972872773,1.05227884575137,1.90125759384206,5.05028044491965,1.77952527186261,2.36410757701352,0.818462086339379,1.08455788830176,1.35034627686799,4.49659040288303,1.40358965067245,0.644613162144895,0.956441660344217,0.220591419119515,0.231867835620421 | |||
|short_description=p1@Lrfn5 | |||
}} |
Revision as of 23:01, 12 September 2013
Short description: | p1@Lrfn5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lrfn5_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000130887, ENSMUST00000138980_5end |
EntrezGene: | Lrfn5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.96e-21 | 23 |
neuroblast (sensu Vertebrata) | 2.96e-21 | 23 |
neuron | 1.26e-13 | 33 |
neuronal stem cell | 1.26e-13 | 33 |
neuroblast | 1.26e-13 | 33 |
electrically signaling cell | 1.26e-13 | 33 |
electrically responsive cell | 2.58e-10 | 39 |
electrically active cell | 2.58e-10 | 39 |
ectodermal cell | 5.26e-09 | 44 |
neurectodermal cell | 5.26e-09 | 44 |
neural cell | 1.17e-08 | 43 |
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Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.