FFCP PHASE1:Hg19::chr3:19389327..19389339,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=131096|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18864|TSSclassifier=N|UniProt=|association_with_transcript=114bp_to_ENST00000475063_5end|coexpression_cluster_id=C47|description=CAGE_peak_4_at_KCNH8_5end|id=chr3:19389327..19389339,+|ontology_enrichment_celltype=CL:0000236!1.75e-30!14;CL:0000945!2.43e-25!24;CL:0000826!2.43e-25!24;CL:0000738!9.77e-14!140;CL:0000542!3.68e-12!53;CL:0000051!3.68e-12!53;CL:0002087!1.25e-11!119;CL:0000838!6.27e-11!52;CL:0000784!4.43e-10!3;CL:0000037!1.15e-09!172;CL:0000566!1.15e-09!172;CL:0000842!1.61e-09!3;CL:0000988!1.06e-08!182;CL:0002031!3.03e-07!124;CL:0000224!3.17e-07!4|ontology_enrichment_celltype_v019=CL:0000236;9.00e-63;13!CL:0000945;2.12e-38;24!CL:0000784;6.50e-18;3!CL:0000542;1.82e-15;53!CL:0000226;3.02e-08;3!CL:0000842;3.02e-08;3!CL:0000785;6.38e-07;1!CL:0000819;6.38e-07;1|ontology_enrichment_celltype_v019_2=CL:0000236,4.07e-58,14;CL:0000945,2.40e-38,24;CL:0000826,2.40e-38,24;CL:0000542,2.07e-18,53;CL:0000051,2.07e-18,53;CL:0000784,6.50e-18,3;CL:0000838,3.12e-16,52;CL:0000738,2.49e-12,136;CL:0002087,1.31e-10,115;CL:0000037,3.45e-09,168;CL:0000988,1.64e-08,177;CL:0000226,2.60e-08,3;CL:0000842,2.60e-08,3;CL:0000819,6.38e-07,1|ontology_enrichment_development_v019=CL:0000051;1.82e-15;53!UBERON:0004872;1.89e-07;7!UBERON:0001045;6.38e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060073;6.38e-07;1!DOID:8675;6.38e-07;1|ontology_enrichment_disease_v019_2=DOID:0060073,6.38e-07,1;DOID:8675,6.38e-07,1|ontology_enrichment_uberon=UBERON:0000178!3.64e-26!15;UBERON:0000179!3.64e-26!15;UBERON:0000463!3.64e-26!15;UBERON:0007023!1.05e-13!115;UBERON:0002390!1.33e-09!102;UBERON:0003061!1.33e-09!102;UBERON:0002193!3.34e-09!112;UBERON:0006331!3.80e-08!3|ontology_enrichment_uberon_v019=UBERON:0000178;6.67e-35;15!UBERON:0000179;6.67e-35;15!UBERON:0000463;6.67e-35;15!UBERON:0002390;8.83e-21;32!UBERON:0002193;4.98e-13;42!UBERON:0002106;5.04e-08;3!UBERON:0002372;6.38e-07;1!UBERON:0001154;6.38e-07;1!UBERON:0001153;6.38e-07;1!UBERON:0009854;6.38e-07;1!UBERON:0001961;6.38e-07;1!UBERON:0001744;6.38e-07;1!UBERON:0001042;6.38e-07;1!UBERON:0001735;6.38e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.46e-35,15;UBERON:0000179,4.46e-35,15;UBERON:0000463,4.46e-35,15;UBERON:0002106,5.61e-08,3;UBERON:0004854,5.61e-08,3;UBERON:0009034,5.61e-08,3;UBERON:0002095,5.61e-08,3;UBERON:0004782,5.61e-08,3;UBERON:0003281,5.61e-08,3;UBERON:0009664,5.61e-08,3;UBERON:0002296,5.61e-08,3;UBERON:0005602,5.61e-08,3;UBERON:0001179,5.61e-08,3;UBERON:0006293,5.61e-08,3;UBERON:0002193,4.78e-07,108;UBERON:0002372,6.02e-07,1;UBERON:0001961,6.02e-07,1;UBERON:0001744,6.02e-07,1;UBERON:0001735,6.02e-07,1;UBERON:0001154,6.76e-07,1;UBERON:0001153,6.76e-07,1;UBERON:0001045,6.76e-07,1;UBERON:0002390,8.41e-07,98;UBERON:0003061,8.41e-07,98|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,1.08454080812422,0.284338464974843,0,0,0.200544447470142,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0.645484683583826,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,24.6394742245852,34.4067325095143,36.4698794084057,37.5522595858526,32.832470936953,36.7841561570869,36.3574680031674,28.6216126360609,51.7983801889598,39.9321288772238,36.698229900022,1.32171328579026,2.24203425192614,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0166062208244,14.2998727695032,16.3441300585009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.13536052245775,1.94142780736755,0.960548020230999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53723804616085,5.35246044999663,1.70894156152249,2.62054953003568,6.9931586424653,2.59389324477087,5.40031437238115,0.79312517629427,0,0,0,1.11481905075431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31540698637377,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.46664099509765,0,0,0,0,0.61214552326098,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387956065953678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=131096 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18864 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=114bp_to_ENST00000475063_5end | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_4_at_KCNH8_5end | |||
|id=chr3:19389327..19389339,+ | |||
|ontology_enrichment_celltype=CL:0000236!1.75e-30!14;CL:0000945!2.43e-25!24;CL:0000826!2.43e-25!24;CL:0000738!9.77e-14!140;CL:0000542!3.68e-12!53;CL:0000051!3.68e-12!53;CL:0002087!1.25e-11!119;CL:0000838!6.27e-11!52;CL:0000784!4.43e-10!3;CL:0000037!1.15e-09!172;CL:0000566!1.15e-09!172;CL:0000842!1.61e-09!3;CL:0000988!1.06e-08!182;CL:0002031!3.03e-07!124;CL:0000224!3.17e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000236;9.00e-63;13!CL:0000945;2.12e-38;24!CL:0000784;6.50e-18;3!CL:0000542;1.82e-15;53!CL:0000226;3.02e-08;3!CL:0000842;3.02e-08;3!CL:0000785;6.38e-07;1!CL:0000819;6.38e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,4.07e-58,14;CL:0000945,2.40e-38,24;CL:0000826,2.40e-38,24;CL:0000542,2.07e-18,53;CL:0000051,2.07e-18,53;CL:0000784,6.50e-18,3;CL:0000838,3.12e-16,52;CL:0000738,2.49e-12,136;CL:0002087,1.31e-10,115;CL:0000037,3.45e-09,168;CL:0000988,1.64e-08,177;CL:0000226,2.60e-08,3;CL:0000842,2.60e-08,3;CL:0000819,6.38e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000051;1.82e-15;53!UBERON:0004872;1.89e-07;7!UBERON:0001045;6.38e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060073;6.38e-07;1!DOID:8675;6.38e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,6.38e-07,1;DOID:8675,6.38e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!3.64e-26!15;UBERON:0000179!3.64e-26!15;UBERON:0000463!3.64e-26!15;UBERON:0007023!1.05e-13!115;UBERON:0002390!1.33e-09!102;UBERON:0003061!1.33e-09!102;UBERON:0002193!3.34e-09!112;UBERON:0006331!3.80e-08!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.67e-35;15!UBERON:0000179;6.67e-35;15!UBERON:0000463;6.67e-35;15!UBERON:0002390;8.83e-21;32!UBERON:0002193;4.98e-13;42!UBERON:0002106;5.04e-08;3!UBERON:0002372;6.38e-07;1!UBERON:0001154;6.38e-07;1!UBERON:0001153;6.38e-07;1!UBERON:0009854;6.38e-07;1!UBERON:0001961;6.38e-07;1!UBERON:0001744;6.38e-07;1!UBERON:0001042;6.38e-07;1!UBERON:0001735;6.38e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.46e-35,15;UBERON:0000179,4.46e-35,15;UBERON:0000463,4.46e-35,15;UBERON:0002106,5.61e-08,3;UBERON:0004854,5.61e-08,3;UBERON:0009034,5.61e-08,3;UBERON:0002095,5.61e-08,3;UBERON:0004782,5.61e-08,3;UBERON:0003281,5.61e-08,3;UBERON:0009664,5.61e-08,3;UBERON:0002296,5.61e-08,3;UBERON:0005602,5.61e-08,3;UBERON:0001179,5.61e-08,3;UBERON:0006293,5.61e-08,3;UBERON:0002193,4.78e-07,108;UBERON:0002372,6.02e-07,1;UBERON:0001961,6.02e-07,1;UBERON:0001744,6.02e-07,1;UBERON:0001735,6.02e-07,1;UBERON:0001154,6.76e-07,1;UBERON:0001153,6.76e-07,1;UBERON:0001045,6.76e-07,1;UBERON:0002390,8.41e-07,98;UBERON:0003061,8.41e-07,98 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,1.08454080812422,0.284338464974843,0,0,0.200544447470142,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0.645484683583826,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,24.6394742245852,34.4067325095143,36.4698794084057,37.5522595858526,32.832470936953,36.7841561570869,36.3574680031674,28.6216126360609,51.7983801889598,39.9321288772238,36.698229900022,1.32171328579026,2.24203425192614,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0166062208244,14.2998727695032,16.3441300585009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.13536052245775,1.94142780736755,0.960548020230999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53723804616085,5.35246044999663,1.70894156152249,2.62054953003568,6.9931586424653,2.59389324477087,5.40031437238115,0.79312517629427,0,0,0,1.11481905075431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31540698637377,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.46664099509765,0,0,0,0,0.61214552326098,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387956065953678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0.157204305099666,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0.336283722218824,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2217909337381,1.22469987149797,0,0,0,0,0,1.37618785021362,0.143339583151451,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.129177819672012,0.186224142887574,0,0,0,0,0,3.97377112786066,0.143444410785353,0,0,0,0,0,0,0,0,0,2.01273793591026,0 | |||
|short_description=p4@KCNH8 | |||
}} |
Revision as of 23:25, 12 September 2013
Short description: | p4@KCNH8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_KCNH8_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 114bp_to_ENST00000475063_5end |
EntrezGene: | KCNH8 |
HGNC: | 18864 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 4.07e-58 | 14 |
lymphocyte of B lineage | 2.40e-38 | 24 |
pro-B cell | 2.40e-38 | 24 |
lymphocyte | 2.07e-18 | 53 |
common lymphoid progenitor | 2.07e-18 | 53 |
plasmacytoid dendritic cell | 6.50e-18 | 3 |
lymphoid lineage restricted progenitor cell | 3.12e-16 | 52 |
leukocyte | 2.49e-12 | 136 |
nongranular leukocyte | 1.31e-10 | 115 |
hematopoietic stem cell | 3.45e-09 | 168 |
hematopoietic cell | 1.64e-08 | 177 |
single nucleate cell | 2.60e-08 | 3 |
mononuclear cell | 2.60e-08 | 3 |
B-1 B cell | 6.38e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
blood | 4.46e-35 | 15 |
haemolymphatic fluid | 4.46e-35 | 15 |
organism substance | 4.46e-35 | 15 |
spleen | 5.61e-08 | 3 |
gastrointestinal system mesentery | 5.61e-08 | 3 |
stomach region | 5.61e-08 | 3 |
mesentery | 5.61e-08 | 3 |
gastrointestinal system serosa | 5.61e-08 | 3 |
mesentery of stomach | 5.61e-08 | 3 |
gut mesentery | 5.61e-08 | 3 |
dorsal mesentery | 5.61e-08 | 3 |
dorsal mesogastrium | 5.61e-08 | 3 |
peritoneal cavity | 5.61e-08 | 3 |
spleen primordium | 5.61e-08 | 3 |
hemolymphoid system | 4.78e-07 | 108 |
tonsil | 6.02e-07 | 1 |
mucosa-associated lymphoid tissue | 6.02e-07 | 1 |
lymphoid tissue | 6.02e-07 | 1 |
tonsillar ring | 6.02e-07 | 1 |
vermiform appendix | 6.76e-07 | 1 |
caecum | 6.76e-07 | 1 |
midgut | 6.76e-07 | 1 |
hematopoietic system | 8.41e-07 | 98 |
blood island | 8.41e-07 | 98 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 6.38e-07 | 1 |
lymphosarcoma | 6.38e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.