FFCP PHASE1:Hg19::chr3:52720262..52720278,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26354|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29931|TSSclassifier=S|UniProt=|association_with_transcript=69bp_to_ENST00000460073_5end|coexpression_cluster_id=C17|description=CAGE_peak_6_at_GNL3_5end|id=chr3:52720262..52720278,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002570;6.06e-10;8!CL:0002521;2.97e-07;3|ontology_enrichment_celltype_v019_2=CL:0002570,6.63e-10,8;CL:0002521,2.97e-07,3|ontology_enrichment_development_v019=UBERON:0008801;1.88e-19;1|ontology_enrichment_disease=DOID:14566!2.02e-07!239;DOID:162!4.88e-07!235|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0001831;1.88e-19;1!UBERON:0001567;1.88e-19;1!UBERON:0002331;4.23e-17;10!UBERON:0001013;3.72e-12;14!UBERON:0000178;1.27e-11;15!UBERON:0000179;1.27e-11;15!UBERON:0000463;1.27e-11;15!UBERON:0001829;2.07e-10;2!UBERON:0004089;2.07e-10;2!UBERON:0002390;3.04e-09;32!UBERON:0000478;1.76e-07;24!UBERON:0002190;2.97e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0001831,1.88e-19,1;UBERON:0001567,1.88e-19,1;UBERON:0008801,1.88e-19,1;UBERON:0002331,4.23e-17,10;UBERON:0000358,4.23e-17,10;UBERON:0000307,4.23e-17,10;UBERON:0000091,4.23e-17,10;UBERON:0000087,4.23e-17,10;UBERON:0007010,4.23e-17,10;UBERON:0007806,4.23e-17,10;UBERON:0008780,4.23e-17,10;UBERON:0005728,4.23e-17,10;UBERON:0001013,4.02e-12,14;UBERON:0000178,1.27e-11,15;UBERON:0000179,1.27e-11,15;UBERON:0000463,1.27e-11,15;UBERON:0001829,2.07e-10,2;UBERON:0004089,2.07e-10,2;UBERON:0000478,1.76e-07,24;UBERON:0002190,2.97e-07,3|phase1_expression=0.363356758541113,0.214100523890983,0.704772020479856,0,0.893922188854576,0,0,1.26343974685366,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0.229240217243854,0.492603536699674,0.472264687882075,0,0,0,0.919421224478927,0,0,0.232401601740905,0,0,0,0,0,0,0,0,0,0.377875943688809,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0.445641827540694,0,0,0,0,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.12786256184353,0.722878304769133,0,0.144846518960824,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735326160691737,0,0.0892997282840798,0.22452937262617,0.450445921933289,0,0,0.366403487860815,0,0,0,0,0.12663051166458,0.397227542439656,0.573673241497627,0.354668382198357,0,0,0,0,0.134710672069688,0.163461903113459,0.151357427644931,0,0,0,1.1409436430889,0,0,0.161872944368132,0.421352420106746,0.204154171254893,0,0,0,0,0,0,0.336672227908132,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0.300091096084402,0.515262646192195,0,0.37223371266318,0.337552664482532,0,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0.339121184620975,0,0.818238361772504,0,0.487894824518382,0.397589304964456,0.232387885739037,0.310983165046111,0.756962552626885,0,0,0,0,0.464367928031979,0,0.354920400119532,0.168584690078102,0.241011029883482,0.110293972732394,0.217879444092406,0.474541238222193,0.269662616320329,0,0.769494313892781,0,0,0,0,0,0,0,0,0.245976877086227,0.686271241194102,0.219500570817251,0,0.100528972411631,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0.858486162094873,0,0.468008530278475,0,0,0,0.992425680696705,0.447792613514241,0,0,55.6709458822416,0.176096868026452,0,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0.258543431515556,0,0,0,0,0,0,0.266422179016099,0.285955987316295,0.542621605391443,0,0,0.355391948742546,0,0.301439377059586,0,0.199945982364114,0,0,0,0.479249710983165,0,0,0.868687840005475,0.205476322550383,0,0.112085143993527,0.197030760201927,0,0,0,0,0.773288812777695,0,0,0,0,0,0.12269149171914,0,0.271265023699736,0,0,0.157702415033935,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0.206768026122887,0,0,0,0,0,0,0.460385919864187,0.841980283299221,0.896974044789907,0.511707249066704,0.321707842287215,0,0.154209693802656,0,0.246381468041427,0.519254429183621,0,0.120859449591622,0.40101294060657,0.0920809889358963,0.114814448164607,0.182091168006717,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0.27470839445503,0.082509499920588,0,0,0,0,0.308097234229289,0.15350367472613,0.137836572484531,0.322260734604821,0.145016693914229,0,0,0.661139661443912,0.192190067365106,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0.18532421910392,0.572499546967965,0,0,0,0,0,0,0,0,0,0.353437207037059,0,0,0,0,0.243713489631284,0,0.272999822815972,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0.0982490410131212,0,0,0.422215270595328,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0.238231775457789,0,0,0,0,0.106824071127473,0,0,0,0.144269212976445,0,0.478278818186467,0.399158742865633,0.383010740264733,0.63502074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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=26354 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29931 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=69bp_to_ENST00000460073_5end | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_6_at_GNL3_5end | |||
|id=chr3:52720262..52720278,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002570;6.06e-10;8!CL:0002521;2.97e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002570,6.63e-10,8;CL:0002521,2.97e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008801;1.88e-19;1 | |||
|ontology_enrichment_disease=DOID:14566!2.02e-07!239;DOID:162!4.88e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001831;1.88e-19;1!UBERON:0001567;1.88e-19;1!UBERON:0002331;4.23e-17;10!UBERON:0001013;3.72e-12;14!UBERON:0000178;1.27e-11;15!UBERON:0000179;1.27e-11;15!UBERON:0000463;1.27e-11;15!UBERON:0001829;2.07e-10;2!UBERON:0004089;2.07e-10;2!UBERON:0002390;3.04e-09;32!UBERON:0000478;1.76e-07;24!UBERON:0002190;2.97e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001831,1.88e-19,1;UBERON:0001567,1.88e-19,1;UBERON:0008801,1.88e-19,1;UBERON:0002331,4.23e-17,10;UBERON:0000358,4.23e-17,10;UBERON:0000307,4.23e-17,10;UBERON:0000091,4.23e-17,10;UBERON:0000087,4.23e-17,10;UBERON:0007010,4.23e-17,10;UBERON:0007806,4.23e-17,10;UBERON:0008780,4.23e-17,10;UBERON:0005728,4.23e-17,10;UBERON:0001013,4.02e-12,14;UBERON:0000178,1.27e-11,15;UBERON:0000179,1.27e-11,15;UBERON:0000463,1.27e-11,15;UBERON:0001829,2.07e-10,2;UBERON:0004089,2.07e-10,2;UBERON:0000478,1.76e-07,24;UBERON:0002190,2.97e-07,3 | |||
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| |||
|short_description=p6@GNL3 | |||
}} |
Revision as of 00:51, 13 September 2013
Short description: | p6@GNL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_GNL3_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 69bp_to_ENST00000460073_5end |
EntrezGene: | GNL3 |
HGNC: | 29931 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of adipose | 6.63e-10 | 8 |
subcutaneous fat cell | 2.97e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
parotid gland | 1.88e-19 | 1 |
cheek | 1.88e-19 | 1 |
parotid gland primordium | 1.88e-19 | 1 |
umbilical cord | 4.23e-17 | 10 |
blastocyst | 4.23e-17 | 10 |
blastula | 4.23e-17 | 10 |
bilaminar disc | 4.23e-17 | 10 |
inner cell mass | 4.23e-17 | 10 |
cleaving embryo | 4.23e-17 | 10 |
connecting stalk | 4.23e-17 | 10 |
inner cell mass derived epiblast | 4.23e-17 | 10 |
extraembryonic mesoderm | 4.23e-17 | 10 |
adipose tissue | 4.02e-12 | 14 |
blood | 1.27e-11 | 15 |
haemolymphatic fluid | 1.27e-11 | 15 |
organism substance | 1.27e-11 | 15 |
major salivary gland | 2.07e-10 | 2 |
midface | 2.07e-10 | 2 |
extraembryonic structure | 1.76e-07 | 24 |
subcutaneous adipose tissue | 2.97e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.