FFCP PHASE1:Mm9::chr14:31166760..31166789,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12289|HGNC=|MCL_coexpression_id=32|UniProt=Q99246,E9QPU4,Q6PDD2|association_with_transcript=-88bp_to_ENSMUST00000057695,ENSMUST00000112249,NM_001083616,uc007suu.1,uc007suv.1,uc007suw.1_5end|description=CAGE_peak_3_at_Cacna1d_5end|id=chr14:31166760..31166789,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.52e-15!71;UBERON:0003075!2.52e-15!71;UBERON:0007284!2.52e-15!71;UBERON:0001049!3.28e-14!52;UBERON:0005068!3.28e-14!52;UBERON:0006241!3.28e-14!52;UBERON:0007135!3.28e-14!52;UBERON:0000033!8.83e-14!63;UBERON:0003056!6.94e-13!49;UBERON:0000955!1.66e-12!50;UBERON:0006238!1.66e-12!50;UBERON:0002616!7.19e-12!49;UBERON:0003080!5.58e-11!40;UBERON:0002780!1.47e-10!39;UBERON:0001890!1.47e-10!39;UBERON:0006240!1.47e-10!39;UBERON:0002020!2.82e-10!34;UBERON:0000468!4.30e-09!333;UBERON:0001017!7.16e-09!73;UBERON:0005743!7.16e-09!73;UBERON:0002791!9.21e-09!29;UBERON:0003528!9.21e-09!29;UBERON:0001893!9.21e-09!29;UBERON:0002048!1.42e-08!14;UBERON:0000117!1.42e-08!14;UBERON:0000171!1.42e-08!14;UBERON:0000170!1.42e-08!14;UBERON:0005597!1.42e-08!14;UBERON:0000118!1.42e-08!14;UBERON:0004121!2.15e-08!102;UBERON:0000924!2.15e-08!102;UBERON:0006601!2.15e-08!102;UBERON:0000073!2.90e-08!75;UBERON:0001016!2.90e-08!75;UBERON:0000956!1.57e-07!21;UBERON:0001869!1.57e-07!21;UBERON:0000203!1.57e-07!21;UBERON:0002021!2.52e-07!10;UBERON:0000411!2.52e-07!10;UBERON:0001950!2.52e-07!10;UBERON:0000922!4.27e-07!328;UBERON:0000464!7.24e-07!57|ontology_enrichment_uberon_v019_2=UBERON:0000955,1.73e-14,47;UBERON:0006238,1.73e-14,47;UBERON:0001049,5.05e-14,52;UBERON:0005068,5.05e-14,52;UBERON:0006241,5.05e-14,52;UBERON:0007135,5.05e-14,52;UBERON:0002616,1.33e-13,46;UBERON:0003056,2.09e-13,49;UBERON:0003080,3.43e-13,40;UBERON:0002346,3.51e-13,64;UBERON:0003075,3.51e-13,64;UBERON:0007284,3.51e-13,64;UBERON:0000073,4.65e-13,54;UBERON:0002780,1.36e-12,39;UBERON:0001890,1.36e-12,39;UBERON:0006240,1.36e-12,39;UBERON:0002048,1.46e-11,14;UBERON:0000117,1.46e-11,14;UBERON:0000171,1.46e-11,14;UBERON:0000170,1.46e-11,14;UBERON:0005597,1.46e-11,14;UBERON:0000118,1.46e-11,14;UBERON:0002020,8.48e-11,34;UBERON:0002021,3.42e-10,10;UBERON:0000411,3.42e-10,10;UBERON:0001950,3.42e-10,10;UBERON:0003528,5.45e-10,29;UBERON:0002791,5.45e-10,29;UBERON:0001893,5.45e-10,29;UBERON:0010371,5.54e-10,73;UBERON:0000025,6.82e-09,114;UBERON:0005153,1.08e-08,17;UBERON:0005178,1.08e-08,17;UBERON:0005181,1.08e-08,17;UBERON:0002224,1.08e-08,17;UBERON:0000915,1.08e-08,17;UBERON:0008947,1.08e-08,17;UBERON:0003258,1.08e-08,17;UBERON:0001017,2.26e-08,73;UBERON:0000956,3.24e-08,21;UBERON:0001869,3.24e-08,21;UBERON:0000203,3.24e-08,21;UBERON:0001016,7.46e-08,75;UBERON:0010314,1.51e-07,92;UBERON:0004111,2.47e-07,122;UBERON:0002619,4.29e-07,17;UBERON:0005157,9.89e-07,20|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0.137114433605739,0,0.765389611359628,0,0,0,0.45881856213434,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0.782391344348039,0.436050312760893,0.659058548203415,0.58328969722285,0.419959264876088,0,0,0,0,0,0,0,2.22548106945558,0,0.633831403506179,0,0,0.449949858640699,0.988866362566974,0,0.599200221036809,0,1.55534418462716,0.945041568321835,1.47227472945967,1.71390590642282,0.662605622854841,0.367472397644862,0.287536413054709,0,0,0.766124028511126,0.614426133024974,1.31886287730194,1.00636407962651,1.04182674111352,1.95428099300967,0,0.61119299110724,0.883885756421003,2.27794689278565,2.42319279572891,0.227178579999552,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0,0,0,0.22836775943812,0,1.7813056687779,0.520455980298408,0.304465478312141,1.15307748628029,1.20578112442098,1.41106448562846,0.251333182659351,0,0.144599356919912,0,0.323533699894818,0.220841518460394,0.484875253135222,0,2.92780797011547,4.60782754989601,0,0,0,0,1.79748767285787,3.66000482254901,2.51308704225729,2.9550134432687,4.34716277461562,2.0778804455956,3.40706652442291,2.03678727700633,0.870848794270651,1.0108910337347,0.841767423545896,0.520481771850815,0.919608417733892,0.720248519221397,1.05493372485001,2.17716797284249,1.40925092313335,2.06143794031403,1.03481348295606,0,0.378212160335639,0.527853372491847,0.43839146485515,0.834141747676794,0.696504333044333,1.4404749548556,0.398068533636986,0,0,0,0.414251545071004,0.234526059981096,0.36012412292203,0,0.590292695242212,0.154267112887378,0.232533944750408,0,0.233530684734339,0.16455984991348,0.492502392237286,0.486412857275134,0.438599962275997,0.219550115291051,0.268412837520744,4.20579897128254,1.9551876352064,0,0.264450566663544,0.853153002140936,0.696710015581316,1.15980715189884,0.80673409849337,0.889512175379481,0.570676878337677,0.474529061544512,0.988193728344065,0.251335208800269,0.795825888164603,0.58489226135736,2.69645822596266,0.216138049874694,0.199141273254367,0.379335801906163,0.456994050438915,1.1270773567308,0.814605311381257,0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| ||
|EntrezGene=12289 | |||
|HGNC= | |||
|MCL_coexpression_id=32 | |||
|UniProt=Q99246,E9QPU4,Q6PDD2 | |||
|association_with_transcript=-88bp_to_ENSMUST00000057695,ENSMUST00000112249,NM_001083616,uc007suu.1,uc007suv.1,uc007suw.1_5end | |||
|description=CAGE_peak_3_at_Cacna1d_5end | |||
|id=chr14:31166760..31166789,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.52e-15!71;UBERON:0003075!2.52e-15!71;UBERON:0007284!2.52e-15!71;UBERON:0001049!3.28e-14!52;UBERON:0005068!3.28e-14!52;UBERON:0006241!3.28e-14!52;UBERON:0007135!3.28e-14!52;UBERON:0000033!8.83e-14!63;UBERON:0003056!6.94e-13!49;UBERON:0000955!1.66e-12!50;UBERON:0006238!1.66e-12!50;UBERON:0002616!7.19e-12!49;UBERON:0003080!5.58e-11!40;UBERON:0002780!1.47e-10!39;UBERON:0001890!1.47e-10!39;UBERON:0006240!1.47e-10!39;UBERON:0002020!2.82e-10!34;UBERON:0000468!4.30e-09!333;UBERON:0001017!7.16e-09!73;UBERON:0005743!7.16e-09!73;UBERON:0002791!9.21e-09!29;UBERON:0003528!9.21e-09!29;UBERON:0001893!9.21e-09!29;UBERON:0002048!1.42e-08!14;UBERON:0000117!1.42e-08!14;UBERON:0000171!1.42e-08!14;UBERON:0000170!1.42e-08!14;UBERON:0005597!1.42e-08!14;UBERON:0000118!1.42e-08!14;UBERON:0004121!2.15e-08!102;UBERON:0000924!2.15e-08!102;UBERON:0006601!2.15e-08!102;UBERON:0000073!2.90e-08!75;UBERON:0001016!2.90e-08!75;UBERON:0000956!1.57e-07!21;UBERON:0001869!1.57e-07!21;UBERON:0000203!1.57e-07!21;UBERON:0002021!2.52e-07!10;UBERON:0000411!2.52e-07!10;UBERON:0001950!2.52e-07!10;UBERON:0000922!4.27e-07!328;UBERON:0000464!7.24e-07!57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000955,1.73e-14,47;UBERON:0006238,1.73e-14,47;UBERON:0001049,5.05e-14,52;UBERON:0005068,5.05e-14,52;UBERON:0006241,5.05e-14,52;UBERON:0007135,5.05e-14,52;UBERON:0002616,1.33e-13,46;UBERON:0003056,2.09e-13,49;UBERON:0003080,3.43e-13,40;UBERON:0002346,3.51e-13,64;UBERON:0003075,3.51e-13,64;UBERON:0007284,3.51e-13,64;UBERON:0000073,4.65e-13,54;UBERON:0002780,1.36e-12,39;UBERON:0001890,1.36e-12,39;UBERON:0006240,1.36e-12,39;UBERON:0002048,1.46e-11,14;UBERON:0000117,1.46e-11,14;UBERON:0000171,1.46e-11,14;UBERON:0000170,1.46e-11,14;UBERON:0005597,1.46e-11,14;UBERON:0000118,1.46e-11,14;UBERON:0002020,8.48e-11,34;UBERON:0002021,3.42e-10,10;UBERON:0000411,3.42e-10,10;UBERON:0001950,3.42e-10,10;UBERON:0003528,5.45e-10,29;UBERON:0002791,5.45e-10,29;UBERON:0001893,5.45e-10,29;UBERON:0010371,5.54e-10,73;UBERON:0000025,6.82e-09,114;UBERON:0005153,1.08e-08,17;UBERON:0005178,1.08e-08,17;UBERON:0005181,1.08e-08,17;UBERON:0002224,1.08e-08,17;UBERON:0000915,1.08e-08,17;UBERON:0008947,1.08e-08,17;UBERON:0003258,1.08e-08,17;UBERON:0001017,2.26e-08,73;UBERON:0000956,3.24e-08,21;UBERON:0001869,3.24e-08,21;UBERON:0000203,3.24e-08,21;UBERON:0001016,7.46e-08,75;UBERON:0010314,1.51e-07,92;UBERON:0004111,2.47e-07,122;UBERON:0002619,4.29e-07,17;UBERON:0005157,9.89e-07,20 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0.137114433605739,0,0.765389611359628,0,0,0,0.45881856213434,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0.782391344348039,0.436050312760893,0.659058548203415,0.58328969722285,0.419959264876088,0,0,0,0,0,0,0,2.22548106945558,0,0.633831403506179,0,0,0.449949858640699,0.988866362566974,0,0.599200221036809,0,1.55534418462716,0.945041568321835,1.47227472945967,1.71390590642282,0.662605622854841,0.367472397644862,0.287536413054709,0,0,0.766124028511126,0.614426133024974,1.31886287730194,1.00636407962651,1.04182674111352,1.95428099300967,0,0.61119299110724,0.883885756421003,2.27794689278565,2.42319279572891,0.227178579999552,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0,0,0,0.22836775943812,0,1.7813056687779,0.520455980298408,0.304465478312141,1.15307748628029,1.20578112442098,1.41106448562846,0.251333182659351,0,0.144599356919912,0,0.323533699894818,0.220841518460394,0.484875253135222,0,2.92780797011547,4.60782754989601,0,0,0,0,1.79748767285787,3.66000482254901,2.51308704225729,2.9550134432687,4.34716277461562,2.0778804455956,3.40706652442291,2.03678727700633,0.870848794270651,1.0108910337347,0.841767423545896,0.520481771850815,0.919608417733892,0.720248519221397,1.05493372485001,2.17716797284249,1.40925092313335,2.06143794031403,1.03481348295606,0,0.378212160335639,0.527853372491847,0.43839146485515,0.834141747676794,0.696504333044333,1.4404749548556,0.398068533636986,0,0,0,0.414251545071004,0.234526059981096,0.36012412292203,0,0.590292695242212,0.154267112887378,0.232533944750408,0,0.233530684734339,0.16455984991348,0.492502392237286,0.486412857275134,0.438599962275997,0.219550115291051,0.268412837520744,4.20579897128254,1.9551876352064,0,0.264450566663544,0.853153002140936,0.696710015581316,1.15980715189884,0.80673409849337,0.889512175379481,0.570676878337677,0.474529061544512,0.988193728344065,0.251335208800269,0.795825888164603,0.58489226135736,2.69645822596266,0.216138049874694,0.199141273254367,0.379335801906163,0.456994050438915,1.1270773567308,0.814605311381257,0.387904974335251,1.05203729835478,1.26473074248515,0.442830443938806,0,0.370191491765402,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0.482443521363367,1.47802552133284,0.37898282354097,1.95557971730431,1.35796068620151,2.11221223459652,5.86271901046355,7.14130922658041,5.46374214001837,7.56648691709717,8.63712289630222,6.69710028361446,3.93271955317771,4.48980952851328,4.77341893318988,0,0,0,0,1.44495530989013,0.937693492737625,0,0,0,0,0.215423397732799,0,0.222798674082394,0,0,0,0.790575555893047,9.63963949265421,1.56134093729095,0.534196811001766,0.81443479676788,2.3095817216155,1.32745138339963,1.45668381692989,0.302323556964751,0.754420319023592,0.590603785761546,0.922305443831782,1.55056975900933,0.363533729477506,1.06949213515416,2.52829406348653,2.10837217149998,1.03135543248187,2.04263763452273,0.540183282093931,0.129358683782755,0,2.12808280370728,1.07021290561242,1.81003922662333,2.43571959291679,0.23467170806371,0.21183207086382,0.441056796109924,0,0.322928853391811,0.241251699712623,0.119372344003136,0,0.291480836629851,0.741701208042039,0.341741761595705,0.619160603889667,0.370389054739423,0.188368457004691,0.136694227721025,0.228778173206523,0,0,0,0,1.42351197111511,1.01659733563424,1.18805874903981,0.418176592028937,0.436725127492355,1.21377911746339,1.1571483801547,0.26175594198403,0.777689839750757,0.621339313086926,0.56369293868419,0.598066184175915,0,0.388902376688095,0.516639293910924,0.506868376472335,0.352071715937262,1.43224823328345,1.36317147753424,1.69108884578204,0.864090018773596,0,0,0.102710957164827,0,0,0,0.120195449519969,0,0,0.381034033274999,0.201652370273681,0,0,0.116876902181569,0.226730383615211,0,0,0,0.19318959403219,0.187682475451182,0.549454872801795,0.428736758158132,0,4.51801474093653,3.68260189205742,3.43737308063638,2.23409137046794,2.05524755931193,3.0215755895588,5.40018000185445,2.70192721934532,2.26571204492102,4.14208249401456,0,0.399024873401031,1.19513524027894,0.486213434136588,0.628839487883947,0.919217542250071,0.666740183404846,1.44224540067226,1.92551525755089,1.01078884705519,1.2673964994512,1.88626341386076,1.68554713445788,1.15245274328765,1.09127391015665,0.476293691283074,1.39061191133827,1.54327376370964,0,0.735994600671987,0.685738504770831,1.06485483695602,1.1921809497366,1.0174249164263,1.59985946706062,1.01537529470012,1.46342378298218,0.789209134313529,1.35804113845862,1.12228454331548,0.949080144993393,1.47756723563345,1.63692417267876,1.70430525304563,1.35034627686799,2.49810577937946,1.16965804222704,1.71896843238639,0.191288332068843,0.441182838239031,0.231867835620421 | |||
|short_description=p3@Cacna1d | |||
}} |
Revision as of 01:56, 13 September 2013
Short description: | p3@Cacna1d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Cacna1d_5end |
Coexpression cluster: | MCL_coexpression_mm9:32 |
Association with transcript: | -88bp_to_ENSMUST00000057695, ENSMUST00000112249, NM_001083616, uc007suu.1, uc007suv.1, uc007suw.1_5end |
EntrezGene: | Cacna1d |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.