FFCP PHASE1:Hg19::chr4:36245700..36245716,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=116984|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16924|TSSclassifier=S|UniProt=D6RAD6|association_with_transcript=-139bp_to_ENST00000506189_5end|coexpression_cluster_id=C1940|description=CAGE_peak_13_at_ARAP2_5end|id=chr4:36245700..36245716,-|ontology_enrichment_celltype=CL:0000738!4.55e-35!140;CL:0002087!6.94e-30!119;CL:0002031!4.07e-28!124;CL:0000988!4.68e-24!182;CL:0000037!7.01e-24!172;CL:0000566!7.01e-24!172;CL:0002032!1.40e-20!165;CL:0000837!1.40e-20!165;CL:0002057!7.74e-18!42;CL:0000860!6.53e-16!45;CL:0000557!1.38e-14!71;CL:0002009!1.58e-14!65;CL:0000766!2.53e-14!76;CL:0002194!3.10e-14!63;CL:0000576!3.10e-14!63;CL:0000040!3.10e-14!63;CL:0000559!3.10e-14!63;CL:0000838!5.60e-14!52;CL:0000839!6.71e-14!70;CL:0000542!1.65e-13!53;CL:0000051!1.65e-13!53;CL:0000763!9.65e-09!112;CL:0000049!9.65e-09!112;CL:0000084!1.11e-08!25;CL:0000827!1.11e-08!25;CL:0000080!9.27e-08!6;CL:0000451!9.36e-08!10;CL:0000791!9.45e-08!18;CL:0000789!9.45e-08!18;CL:0002420!9.45e-08!18;CL:0002419!9.45e-08!18;CL:0000790!9.45e-08!18|ontology_enrichment_celltype_v019=CL:0000451;2.54e-08;10!CL:0000860;1.20e-07;33!CL:0002057;1.20e-07;33!CL:0000453;2.12e-07;5!CL:0000990;7.46e-07;8|ontology_enrichment_celltype_v019_2=CL:0000738,7.27e-10,136;CL:0000988,6.19e-09,177;CL:0000451,2.11e-08,10;CL:0002087,4.16e-08,115;CL:0002031,1.35e-07,120;CL:0000453,2.66e-07,5;CL:0000860,5.03e-07,42;CL:0002057,5.03e-07,42;CL:0000037,5.54e-07,168;CL:0000990,6.93e-07,8|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!8.16e-23!57;UBERON:0005068!8.16e-23!57;UBERON:0006241!8.16e-23!57;UBERON:0007135!8.16e-23!57;UBERON:0007023!2.25e-19!115;UBERON:0002390!5.85e-19!102;UBERON:0003061!5.85e-19!102;UBERON:0002616!4.65e-18!59;UBERON:0003080!3.06e-17!42;UBERON:0002193!3.58e-17!112;UBERON:0002780!1.76e-16!41;UBERON:0001890!1.76e-16!41;UBERON:0006240!1.76e-16!41;UBERON:0000955!4.95e-15!69;UBERON:0006238!4.95e-15!69;UBERON:0002020!5.84e-15!34;UBERON:0003528!5.84e-15!34;UBERON:0001893!6.05e-15!34;UBERON:0003075!7.56e-15!86;UBERON:0007284!7.56e-15!86;UBERON:0002791!3.15e-14!33;UBERON:0005743!6.23e-14!86;UBERON:0001017!9.52e-14!82;UBERON:0002346!1.57e-13!90;UBERON:0001869!3.35e-13!32;UBERON:0000073!3.70e-12!94;UBERON:0001016!3.70e-12!94;UBERON:0002371!1.67e-11!80;UBERON:0003056!5.37e-11!61;UBERON:0001474!2.04e-10!86;UBERON:0002619!9.72e-10!22;UBERON:0001950!1.41e-09!20;UBERON:0002298!2.93e-09!8;UBERON:0002405!3.33e-09!115;UBERON:0000956!6.03e-09!25;UBERON:0000203!6.03e-09!25;UBERON:0000153!2.02e-08!129;UBERON:0007811!2.02e-08!129;UBERON:0004765!2.66e-08!101;UBERON:0001434!2.66e-08!101;UBERON:0002308!3.26e-08!9;UBERON:0000125!3.26e-08!9;UBERON:0000033!3.72e-07!123;UBERON:0004177!8.34e-07!7;UBERON:0003076!8.46e-07!15;UBERON:0003057!8.46e-07!15|ontology_enrichment_uberon_v019=UBERON:0002780;2.65e-19;41!UBERON:0001890;2.65e-19;41!UBERON:0000073;2.28e-17;53!UBERON:0002616;2.28e-17;53!UBERON:0001893;8.82e-17;34!UBERON:0002791;1.01e-16;32!UBERON:0003528;1.33e-15;34!UBERON:0002020;1.33e-15;34!UBERON:0001869;1.35e-14;32!UBERON:0002420;2.00e-14;9!UBERON:0007245;2.00e-14;9!UBERON:0010009;2.00e-14;9!UBERON:0010011;2.00e-14;9!UBERON:0000454;2.00e-14;9!UBERON:0000125;3.74e-14;9!UBERON:0002308;3.74e-14;9!UBERON:0009663;5.93e-13;7!UBERON:0002619;1.29e-11;22!UBERON:0001950;3.27e-10;20!UBERON:0000956;4.37e-10;25!UBERON:0000203;4.37e-10;25!UBERON:0002298;5.45e-10;6!UBERON:0001897;3.48e-09;2!UBERON:0010225;3.48e-09;2!UBERON:0000955;4.62e-09;68!UBERON:0001017;1.61e-08;75!UBERON:0002771;2.59e-08;2!UBERON:0001875;2.59e-08;2!UBERON:0005162;2.59e-08;2!UBERON:0000122;2.59e-08;2!UBERON:0006514;2.59e-08;2!UBERON:0002021;2.12e-07;5!UBERON:0000349;2.12e-07;5!UBERON:0001016;4.46e-07;83!UBERON:0004732;7.66e-07;13|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.54e-28,53;UBERON:0002616,3.54e-28,53;UBERON:0001049,2.11e-26,56;UBERON:0005068,2.11e-26,56;UBERON:0006241,2.11e-26,56;UBERON:0007135,2.11e-26,56;UBERON:0002780,9.10e-25,41;UBERON:0001890,9.10e-25,41;UBERON:0003080,9.10e-25,41;UBERON:0006240,9.10e-25,41;UBERON:0000955,1.49e-22,68;UBERON:0006238,1.49e-22,68;UBERON:0001893,1.74e-20,34;UBERON:0003528,1.88e-20,34;UBERON:0002020,1.88e-20,34;UBERON:0002791,4.97e-19,32;UBERON:0003075,3.69e-18,82;UBERON:0007284,3.69e-18,82;UBERON:0001017,3.98e-18,81;UBERON:0001016,1.97e-17,89;UBERON:0003056,2.78e-17,61;UBERON:0002346,4.59e-17,86;UBERON:0001869,2.61e-16,32;UBERON:0002420,7.81e-15,9;UBERON:0007245,7.81e-15,9;UBERON:0010009,7.81e-15,9;UBERON:0010011,7.81e-15,9;UBERON:0000454,7.81e-15,9;UBERON:0000125,1.59e-14,9;UBERON:0002308,1.59e-14,9;UBERON:0009663,1.85e-13,7;UBERON:0010371,3.49e-13,104;UBERON:0007023,5.46e-13,114;UBERON:0002619,1.60e-11,22;UBERON:0010314,2.48e-10,132;UBERON:0001950,3.43e-10,20;UBERON:0000956,5.25e-10,25;UBERON:0000203,5.25e-10,25;UBERON:0002298,5.36e-10,6;UBERON:0001897,2.66e-09,2;UBERON:0010225,2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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=116984 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16924 | |||
|TSSclassifier=S | |||
|UniProt=D6RAD6 | |||
|association_with_transcript=-139bp_to_ENST00000506189_5end | |||
|coexpression_cluster_id=C1940 | |||
|description=CAGE_peak_13_at_ARAP2_5end | |||
|id=chr4:36245700..36245716,- | |||
|ontology_enrichment_celltype=CL:0000738!4.55e-35!140;CL:0002087!6.94e-30!119;CL:0002031!4.07e-28!124;CL:0000988!4.68e-24!182;CL:0000037!7.01e-24!172;CL:0000566!7.01e-24!172;CL:0002032!1.40e-20!165;CL:0000837!1.40e-20!165;CL:0002057!7.74e-18!42;CL:0000860!6.53e-16!45;CL:0000557!1.38e-14!71;CL:0002009!1.58e-14!65;CL:0000766!2.53e-14!76;CL:0002194!3.10e-14!63;CL:0000576!3.10e-14!63;CL:0000040!3.10e-14!63;CL:0000559!3.10e-14!63;CL:0000838!5.60e-14!52;CL:0000839!6.71e-14!70;CL:0000542!1.65e-13!53;CL:0000051!1.65e-13!53;CL:0000763!9.65e-09!112;CL:0000049!9.65e-09!112;CL:0000084!1.11e-08!25;CL:0000827!1.11e-08!25;CL:0000080!9.27e-08!6;CL:0000451!9.36e-08!10;CL:0000791!9.45e-08!18;CL:0000789!9.45e-08!18;CL:0002420!9.45e-08!18;CL:0002419!9.45e-08!18;CL:0000790!9.45e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000451;2.54e-08;10!CL:0000860;1.20e-07;33!CL:0002057;1.20e-07;33!CL:0000453;2.12e-07;5!CL:0000990;7.46e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.27e-10,136;CL:0000988,6.19e-09,177;CL:0000451,2.11e-08,10;CL:0002087,4.16e-08,115;CL:0002031,1.35e-07,120;CL:0000453,2.66e-07,5;CL:0000860,5.03e-07,42;CL:0002057,5.03e-07,42;CL:0000037,5.54e-07,168;CL:0000990,6.93e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.16e-23!57;UBERON:0005068!8.16e-23!57;UBERON:0006241!8.16e-23!57;UBERON:0007135!8.16e-23!57;UBERON:0007023!2.25e-19!115;UBERON:0002390!5.85e-19!102;UBERON:0003061!5.85e-19!102;UBERON:0002616!4.65e-18!59;UBERON:0003080!3.06e-17!42;UBERON:0002193!3.58e-17!112;UBERON:0002780!1.76e-16!41;UBERON:0001890!1.76e-16!41;UBERON:0006240!1.76e-16!41;UBERON:0000955!4.95e-15!69;UBERON:0006238!4.95e-15!69;UBERON:0002020!5.84e-15!34;UBERON:0003528!5.84e-15!34;UBERON:0001893!6.05e-15!34;UBERON:0003075!7.56e-15!86;UBERON:0007284!7.56e-15!86;UBERON:0002791!3.15e-14!33;UBERON:0005743!6.23e-14!86;UBERON:0001017!9.52e-14!82;UBERON:0002346!1.57e-13!90;UBERON:0001869!3.35e-13!32;UBERON:0000073!3.70e-12!94;UBERON:0001016!3.70e-12!94;UBERON:0002371!1.67e-11!80;UBERON:0003056!5.37e-11!61;UBERON:0001474!2.04e-10!86;UBERON:0002619!9.72e-10!22;UBERON:0001950!1.41e-09!20;UBERON:0002298!2.93e-09!8;UBERON:0002405!3.33e-09!115;UBERON:0000956!6.03e-09!25;UBERON:0000203!6.03e-09!25;UBERON:0000153!2.02e-08!129;UBERON:0007811!2.02e-08!129;UBERON:0004765!2.66e-08!101;UBERON:0001434!2.66e-08!101;UBERON:0002308!3.26e-08!9;UBERON:0000125!3.26e-08!9;UBERON:0000033!3.72e-07!123;UBERON:0004177!8.34e-07!7;UBERON:0003076!8.46e-07!15;UBERON:0003057!8.46e-07!15 | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.54e-28,53;UBERON:0002616,3.54e-28,53;UBERON:0001049,2.11e-26,56;UBERON:0005068,2.11e-26,56;UBERON:0006241,2.11e-26,56;UBERON:0007135,2.11e-26,56;UBERON:0002780,9.10e-25,41;UBERON:0001890,9.10e-25,41;UBERON:0003080,9.10e-25,41;UBERON:0006240,9.10e-25,41;UBERON:0000955,1.49e-22,68;UBERON:0006238,1.49e-22,68;UBERON:0001893,1.74e-20,34;UBERON:0003528,1.88e-20,34;UBERON:0002020,1.88e-20,34;UBERON:0002791,4.97e-19,32;UBERON:0003075,3.69e-18,82;UBERON:0007284,3.69e-18,82;UBERON:0001017,3.98e-18,81;UBERON:0001016,1.97e-17,89;UBERON:0003056,2.78e-17,61;UBERON:0002346,4.59e-17,86;UBERON:0001869,2.61e-16,32;UBERON:0002420,7.81e-15,9;UBERON:0007245,7.81e-15,9;UBERON:0010009,7.81e-15,9;UBERON:0010011,7.81e-15,9;UBERON:0000454,7.81e-15,9;UBERON:0000125,1.59e-14,9;UBERON:0002308,1.59e-14,9;UBERON:0009663,1.85e-13,7;UBERON:0010371,3.49e-13,104;UBERON:0007023,5.46e-13,114;UBERON:0002619,1.60e-11,22;UBERON:0010314,2.48e-10,132;UBERON:0001950,3.43e-10,20;UBERON:0000956,5.25e-10,25;UBERON:0000203,5.25e-10,25;UBERON:0002298,5.36e-10,6;UBERON:0001897,2.66e-09,2;UBERON:0010225,2.66e-09,2;UBERON:0001875,8.64e-09,2;UBERON:0006514,8.64e-09,2;UBERON:0002771,2.81e-08,2;UBERON:0005162,3.02e-08,2;UBERON:0000122,3.02e-08,2;UBERON:0002390,3.50e-08,98;UBERON:0003061,3.50e-08,98;UBERON:0002021,2.14e-07,5;UBERON:0000349,2.78e-07,5;UBERON:0002193,4.53e-07,108;UBERON:0004732,7.60e-07,13 | |||
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| |||
|short_description=p13@ARAP2 | |||
}} |
Revision as of 10:44, 13 September 2013
Short description: | p13@ARAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_ARAP2_5end |
Coexpression cluster: | C1940_migratory_thalamus_cord_globus_substantia_hippocampus_CD14CD16 |
Association with transcript: | -139bp_to_ENST00000506189_5end |
EntrezGene: | ARAP2 |
HGNC: | 16924 |
UniProt: | D6RAD6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.27e-10 | 136 |
hematopoietic cell | 6.19e-09 | 177 |
dendritic cell | 2.11e-08 | 10 |
nongranular leukocyte | 4.16e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 1.35e-07 | 120 |
Langerhans cell | 2.66e-07 | 5 |
classical monocyte | 5.03e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.03e-07 | 42 |
hematopoietic stem cell | 5.54e-07 | 168 |
conventional dendritic cell | 6.93e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.