FFCP PHASE1:Mm9::chr17:47547456..47547498,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=375|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:47547456..47547498,+|id=chr17:47547456..47547498,+|ontology_enrichment_celltype=CL:0000063!1.47e-23!66;CL:0000144!5.04e-22!121;CL:0000012!5.04e-22!121;CL:0002371!9.49e-20!118;CL:0000548!1.31e-19!115;CL:0000004!1.31e-19!115;CL:0000255!1.31e-19!115;CL:0000066!9.93e-13!25;CL:0000034!1.25e-11!97;CL:0002320!2.34e-10!46;CL:0000134!2.34e-10!46;CL:0002076!2.81e-10!15;CL:0000988!3.44e-10!32;CL:0002032!3.44e-10!32;CL:0000037!3.44e-10!32;CL:0000566!3.44e-10!32;CL:0000837!3.44e-10!32;CL:0000219!6.40e-10!54;CL:0002031!9.80e-09!25;CL:0000624!2.52e-08!8;CL:0000223!2.60e-08!20;CL:0000838!2.79e-08!12;CL:0000738!4.07e-08!17;CL:0002087!4.07e-08!17;CL:0000075!4.69e-08!7;CL:0000723!6.23e-08!91;CL:0000048!6.23e-08!91;CL:0002563!7.87e-08!9;CL:0002251!7.87e-08!9;CL:0000542!1.83e-07!13;CL:0000051!1.83e-07!13;CL:0000084!2.43e-07!11;CL:0000827!2.43e-07!11;CL:0000791!3.21e-07!9;CL:0000789!3.21e-07!9;CL:0002420!3.21e-07!9;CL:0002419!3.21e-07!9;CL:0000790!3.21e-07!9;CL:0000239!3.47e-07!6;CL:0000677!3.47e-07!6;CL:0000212!3.47e-07!6;CL:0000584!3.47e-07!6|ontology_enrichment_celltype_v019_2=CL:0000349,7.18e-13,3;CL:0000351,7.18e-13,3;CL:0000473,5.15e-09,7;CL:0000217,6.59e-09,2;CL:0000328,6.59e-09,2;CL:0002573,6.59e-09,2;CL:0002376,6.59e-09,2;CL:0000218,6.59e-09,2;CL:0000692,6.59e-09,2;CL:0002377,6.59e-09,2;CL:0002375,6.59e-09,2;CL:0002476,1.35e-08,2;CL:0000066,6.71e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!9.51e-13!15;UBERON:0001242!1.69e-10!13;UBERON:0000060!1.69e-10!13;UBERON:0001262!1.69e-10!13;UBERON:0004786!1.69e-10!13;UBERON:0002384!2.34e-10!46;UBERON:0000485!2.59e-09!11;UBERON:0003350!7.87e-08!9;UBERON:0004808!7.87e-08!9;UBERON:0001277!7.87e-08!9;UBERON:0000064!1.29e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0000331,4.54e-13,3;UBERON:0002116,4.54e-13,3;UBERON:0001204,4.54e-13,3;UBERON:0001168,4.54e-13,3;UBERON:0000358,7.18e-13,3;UBERON:0000307,7.18e-13,3;UBERON:0007010,7.18e-13,3;UBERON:0000344,6.23e-12,15;UBERON:0002108,6.44e-10,4;UBERON:0001962,2.95e-08,2;UBERON:0001961,2.95e-08,2;UBERON:0001744,2.95e-08,2;UBERON:0001242,1.72e-07,13;UBERON:0001262,1.72e-07,13;UBERON:0004786,1.72e-07,13;UBERON:0004923,3.77e-07,24|phase1_expression=0.160148847104794,1.04692622291808,0.909998478779072,0.30246421130683,0.500895729946347,0.33575854382378,1.63528848416868,0.516493293766305,0.563154888606667,0.468129052643987,0.856089841127525,0.319088635981346,0.684802919724823,0.0874204024189974,0,0.607425802169478,0,0.315462165358238,0.274228867211478,0.84877930359606,0,0,1.04479915655574,1.11994695955385,1.37645568640302,1.72269589234506,0.86152399231815,1.50829862880122,7.41091335879858,1.76421090831952,1.99557459589774,0,0,0,0,0.664938581433969,0.612508068787107,0,0,0.523523743973798,0.588231488031014,0,0,0,0,0,0,0,0,0,0,0,0.838913030288682,1.45072428402269,0,0,0,0,0,0,0,0,0.889294796111139,0,0,0,0,0,0,0,0,0,0,0,0.0958454710182364,0,0,0.127687338085188,0,0,0.0914876436024097,0.52091337055676,0.279182999001381,0,0,0.294628585473668,0,0.186399445825301,1.28734528666413,4.30757892608677,0.869593466105033,0.860423876981386,0,0,0,0,0,0,0.779358013808606,1.06001872353102,0.563373679106722,0,2.54805239706646,0,1.94841936910093,1.77351905832569,0.505524445014783,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0,0.209446706813455,0,0.479260498023681,0,0.508280908292259,0,0,0.125654352112864,0,0,0,0,0.101839363850316,0,0,0,0.130120442962704,0,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0.772043721344145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50791283939272,1.63171705145613,0,0,0,0.117211686592203,0,0,0.315508219416257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214337035031592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509935289981566,0.839708713941948,0.276399947608848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,2.66383144048878,1.61484941897056,3.02192309455341,0,0,0,0,0,0,0,0.572895513439397,4.1244763762485,0.685082519770642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr17:47547456..47547498,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=375 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:47547456..47547498,+ | |||
|id=chr17:47547456..47547498,+ | |||
|ontology_enrichment_celltype=CL:0000063!1.47e-23!66;CL:0000144!5.04e-22!121;CL:0000012!5.04e-22!121;CL:0002371!9.49e-20!118;CL:0000548!1.31e-19!115;CL:0000004!1.31e-19!115;CL:0000255!1.31e-19!115;CL:0000066!9.93e-13!25;CL:0000034!1.25e-11!97;CL:0002320!2.34e-10!46;CL:0000134!2.34e-10!46;CL:0002076!2.81e-10!15;CL:0000988!3.44e-10!32;CL:0002032!3.44e-10!32;CL:0000037!3.44e-10!32;CL:0000566!3.44e-10!32;CL:0000837!3.44e-10!32;CL:0000219!6.40e-10!54;CL:0002031!9.80e-09!25;CL:0000624!2.52e-08!8;CL:0000223!2.60e-08!20;CL:0000838!2.79e-08!12;CL:0000738!4.07e-08!17;CL:0002087!4.07e-08!17;CL:0000075!4.69e-08!7;CL:0000723!6.23e-08!91;CL:0000048!6.23e-08!91;CL:0002563!7.87e-08!9;CL:0002251!7.87e-08!9;CL:0000542!1.83e-07!13;CL:0000051!1.83e-07!13;CL:0000084!2.43e-07!11;CL:0000827!2.43e-07!11;CL:0000791!3.21e-07!9;CL:0000789!3.21e-07!9;CL:0002420!3.21e-07!9;CL:0002419!3.21e-07!9;CL:0000790!3.21e-07!9;CL:0000239!3.47e-07!6;CL:0000677!3.47e-07!6;CL:0000212!3.47e-07!6;CL:0000584!3.47e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,7.18e-13,3;CL:0000351,7.18e-13,3;CL:0000473,5.15e-09,7;CL:0000217,6.59e-09,2;CL:0000328,6.59e-09,2;CL:0002573,6.59e-09,2;CL:0002376,6.59e-09,2;CL:0000218,6.59e-09,2;CL:0000692,6.59e-09,2;CL:0002377,6.59e-09,2;CL:0002375,6.59e-09,2;CL:0002476,1.35e-08,2;CL:0000066,6.71e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!9.51e-13!15;UBERON:0001242!1.69e-10!13;UBERON:0000060!1.69e-10!13;UBERON:0001262!1.69e-10!13;UBERON:0004786!1.69e-10!13;UBERON:0002384!2.34e-10!46;UBERON:0000485!2.59e-09!11;UBERON:0003350!7.87e-08!9;UBERON:0004808!7.87e-08!9;UBERON:0001277!7.87e-08!9;UBERON:0000064!1.29e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000331,4.54e-13,3;UBERON:0002116,4.54e-13,3;UBERON:0001204,4.54e-13,3;UBERON:0001168,4.54e-13,3;UBERON:0000358,7.18e-13,3;UBERON:0000307,7.18e-13,3;UBERON:0007010,7.18e-13,3;UBERON:0000344,6.23e-12,15;UBERON:0002108,6.44e-10,4;UBERON:0001962,2.95e-08,2;UBERON:0001961,2.95e-08,2;UBERON:0001744,2.95e-08,2;UBERON:0001242,1.72e-07,13;UBERON:0001262,1.72e-07,13;UBERON:0004786,1.72e-07,13;UBERON:0004923,3.77e-07,24 | |||
|phase1_expression=0.160148847104794,1.04692622291808,0.909998478779072,0.30246421130683,0.500895729946347,0.33575854382378,1.63528848416868,0.516493293766305,0.563154888606667,0.468129052643987,0.856089841127525,0.319088635981346,0.684802919724823,0.0874204024189974,0,0.607425802169478,0,0.315462165358238,0.274228867211478,0.84877930359606,0,0,1.04479915655574,1.11994695955385,1.37645568640302,1.72269589234506,0.86152399231815,1.50829862880122,7.41091335879858,1.76421090831952,1.99557459589774,0,0,0,0,0.664938581433969,0.612508068787107,0,0,0.523523743973798,0.588231488031014,0,0,0,0,0,0,0,0,0,0,0,0.838913030288682,1.45072428402269,0,0,0,0,0,0,0,0,0.889294796111139,0,0,0,0,0,0,0,0,0,0,0,0.0958454710182364,0,0,0.127687338085188,0,0,0.0914876436024097,0.52091337055676,0.279182999001381,0,0,0.294628585473668,0,0.186399445825301,1.28734528666413,4.30757892608677,0.869593466105033,0.860423876981386,0,0,0,0,0,0,0.779358013808606,1.06001872353102,0.563373679106722,0,2.54805239706646,0,1.94841936910093,1.77351905832569,0.505524445014783,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0,0.209446706813455,0,0.479260498023681,0,0.508280908292259,0,0,0.125654352112864,0,0,0,0,0.101839363850316,0,0,0,0.130120442962704,0,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0.772043721344145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50791283939272,1.63171705145613,0,0,0,0.117211686592203,0,0,0.315508219416257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214337035031592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509935289981566,0.839708713941948,0.276399947608848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,2.66383144048878,1.61484941897056,3.02192309455341,0,0,0,0,0,0,0,0.572895513439397,4.1244763762485,0.685082519770642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr17:47547456..47547498,+ | |||
}} |
Revision as of 14:42, 13 September 2013
Short description: | p@chr17:47547456..47547498, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:47547456..47547498, + |
Coexpression cluster: | MCL_coexpression_mm9:375 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 7.18e-13 | 3 |
trophoblast cell | 7.18e-13 | 3 |
defensive cell | 5.15e-09 | 7 |
insulating cell | 6.59e-09 | 2 |
myelin accumulating cell | 6.59e-09 | 2 |
Schwann cell | 6.59e-09 | 2 |
non-myelinating Schwann cell | 6.59e-09 | 2 |
myelinating Schwann cell;;Schwann cell | 6.59e-09 | 2 |
terminal Schwann cell | 6.59e-09 | 2 |
immature Schwann cell | 6.59e-09 | 2 |
Schwann cell precursor | 6.59e-09 | 2 |
bone marrow macrophage | 1.35e-08 | 2 |
epithelial cell | 6.71e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
ileal mucosa | 4.54e-13 | 3 |
ileum | 4.54e-13 | 3 |
mucosa of small intestine | 4.54e-13 | 3 |
wall of small intestine | 4.54e-13 | 3 |
blastocyst | 7.18e-13 | 3 |
blastula | 7.18e-13 | 3 |
cleaving embryo | 7.18e-13 | 3 |
mucosa | 6.23e-12 | 15 |
small intestine | 6.44e-10 | 4 |
gut-associated lymphoid tissue | 2.95e-08 | 2 |
mucosa-associated lymphoid tissue | 2.95e-08 | 2 |
lymphoid tissue | 2.95e-08 | 2 |
intestinal mucosa | 1.72e-07 | 13 |
wall of intestine | 1.72e-07 | 13 |
gastrointestinal system mucosa | 1.72e-07 | 13 |
organ component layer | 3.77e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.