FFCP PHASE1:Mm9::chr19:47253606..47253666,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18011|HGNC=|MCL_coexpression_id=2|UniProt=Q923S6,Q499W5|association_with_transcript=296bp_to_ENSMUST00000111808,NM_021360,uc008hut.1,uc008huu.1_5end|description=CAGE_peak_1_at_Neurl1a_5end|id=chr19:47253606..47253666,+|ontology_enrichment_celltype=CL:0000540!1.07e-14!33;CL:0000047!1.07e-14!33;CL:0000031!1.07e-14!33;CL:0000404!1.07e-14!33;CL:0000221!2.16e-11!44;CL:0000133!2.16e-11!44;CL:0002319!2.32e-11!43;CL:0000117!1.05e-10!23;CL:0000337!1.05e-10!23;CL:0000393!4.87e-10!39;CL:0000211!4.87e-10!39;CL:0000055!1.67e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.92e-16,33;CL:0000047,1.92e-16,33;CL:0000031,1.92e-16,33;CL:0000404,1.92e-16,33;CL:0000117,9.33e-12,23;CL:0000337,9.33e-12,23;CL:0000393,1.02e-11,39;CL:0000211,1.02e-11,39;CL:0000221,1.62e-11,44;CL:0000133,1.62e-11,44;CL:0002319,1.82e-11,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.80e-31!73;UBERON:0005743!6.80e-31!73;UBERON:0000073!8.96e-30!75;UBERON:0001016!8.96e-30!75;UBERON:0004121!2.99e-28!102;UBERON:0000924!2.99e-28!102;UBERON:0006601!2.99e-28!102;UBERON:0002346!1.27e-25!71;UBERON:0003075!1.27e-25!71;UBERON:0007284!1.27e-25!71;UBERON:0001049!4.93e-22!52;UBERON:0005068!4.93e-22!52;UBERON:0006241!4.93e-22!52;UBERON:0007135!4.93e-22!52;UBERON:0000955!5.80e-21!50;UBERON:0006238!5.80e-21!50;UBERON:0002616!2.56e-20!49;UBERON:0000033!3.41e-20!63;UBERON:0003056!1.22e-17!49;UBERON:0003080!5.47e-17!40;UBERON:0002780!2.13e-16!39;UBERON:0001890!2.13e-16!39;UBERON:0006240!2.13e-16!39;UBERON:0002020!1.31e-15!34;UBERON:0002791!7.47e-13!29;UBERON:0003528!7.47e-13!29;UBERON:0001893!7.47e-13!29;UBERON:0000956!1.50e-08!21;UBERON:0001869!1.50e-08!21;UBERON:0000203!1.50e-08!21;UBERON:0002021!4.35e-08!10;UBERON:0000411!4.35e-08!10;UBERON:0001950!4.35e-08!10;UBERON:0002619!5.27e-08!17;UBERON:0007811!1.58e-07!86;UBERON:0000468!7.80e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.42e-34,73;UBERON:0001016,3.25e-32,75;UBERON:0004121,1.84e-27,95;UBERON:0000924,1.84e-27,95;UBERON:0006601,1.84e-27,95;UBERON:0002346,3.23e-26,64;UBERON:0003075,3.23e-26,64;UBERON:0007284,3.23e-26,64;UBERON:0000073,1.41e-25,54;UBERON:0001049,4.22e-24,52;UBERON:0005068,4.22e-24,52;UBERON:0006241,4.22e-24,52;UBERON:0007135,4.22e-24,52;UBERON:0010371,5.94e-23,73;UBERON:0000955,1.03e-20,47;UBERON:0006238,1.03e-20,47;UBERON:0002616,5.53e-20,46;UBERON:0003056,3.41e-19,49;UBERON:0003080,5.42e-19,40;UBERON:0002780,2.65e-18,39;UBERON:0001890,2.65e-18,39;UBERON:0006240,2.65e-18,39;UBERON:0002020,1.10e-17,34;UBERON:0010314,1.66e-16,92;UBERON:0003528,1.87e-14,29;UBERON:0002791,1.87e-14,29;UBERON:0001893,1.87e-14,29;UBERON:0000956,1.98e-09,21;UBERON:0001869,1.98e-09,21;UBERON:0000203,1.98e-09,21;UBERON:0002619,2.59e-09,17;UBERON:0002021,3.08e-09,10;UBERON:0000411,3.08e-09,10;UBERON:0001950,3.08e-09,10|phase1_expression=3.52327463630547,0,0,0,0,0.671517087647559,0.233612640595526,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,14.8825757764372,0.0992909512008853,0,0.319984845586813,0.22940928106717,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.202753862439029,0,0.782391344348039,0.218025156380447,0,0.194429899074283,0.55994568650145,2.87505128729943,0,0,0,0,0,0,7.28339259094552,10.0508286061686,7.60597684207415,1.35537812827653,2.66788438833342,0.449949858640699,0,0,2.39680088414724,1.15265491596466,0.725827286159344,3.51015439662396,1.68259969081106,25.4229376119385,25.6207507503872,5.51208596467293,3.92966431174769,3.67687514644008,26.4278114398533,35.1140179734266,25.6522910537927,9.23204014111357,11.2529801630964,7.8137005583514,30.4309468911505,30.3891809417107,42.7835093775068,28.5789727909458,22.7794689278565,14.1663578827228,0.227178579999552,0.302286240427142,0,0,0,0,0,0,1.40444420131752,0,0,0,1.69012103732017,0,0,0,0,0.506719730950197,0,2.62622923353838,0,4.60170631100957,1.21439728736295,2.13125834818499,2.53677046981664,2.41156224884196,4.23319345688537,1.75933227861546,0.247194967734374,0,1.76922110389975,1.29413479957927,1.10420759230197,0,1.86391761218122,35.7192572354088,36.6531736923546,0.255457055208591,0,0,0.127070227073065,26.5129431746536,156.46520616397,23.6230181972185,139.233280474013,129.903452323808,41.7653969564716,70.0882256452713,2.03678727700633,0.497627882440372,0.758168275301024,3.36706969418358,0.260240885925407,0.459804208866946,1.0803727788321,1.35634336052144,3.94611695077702,3.58718416797579,5.90320864726292,11.1242449417777,0.215567992932842,0.756424320671277,1.40760899331159,0.657587197282725,0.556094498451196,1.39300866608867,0,0.995171334092466,0,0,0,0,0,0.180062061461015,0.23674473558521,0.196764231747404,0,0,0,0,0.329119699826961,0.164167464079095,0.162137619091711,0,0,0,146.361804200633,11.216602749342,0,0.528901133327089,4.05247676016945,2.32236671860439,1.9330119198314,1.61346819698674,0.667134131534611,1.52180500890047,0,1.97638745668813,0.754005626400808,1.98956472041151,0.779856348476481,0.898819408654221,0.864552199498777,0.597423819763102,0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| ||
|EntrezGene=18011 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=Q923S6,Q499W5 | |||
|association_with_transcript=296bp_to_ENSMUST00000111808,NM_021360,uc008hut.1,uc008huu.1_5end | |||
|description=CAGE_peak_1_at_Neurl1a_5end | |||
|id=chr19:47253606..47253666,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.07e-14!33;CL:0000047!1.07e-14!33;CL:0000031!1.07e-14!33;CL:0000404!1.07e-14!33;CL:0000221!2.16e-11!44;CL:0000133!2.16e-11!44;CL:0002319!2.32e-11!43;CL:0000117!1.05e-10!23;CL:0000337!1.05e-10!23;CL:0000393!4.87e-10!39;CL:0000211!4.87e-10!39;CL:0000055!1.67e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.92e-16,33;CL:0000047,1.92e-16,33;CL:0000031,1.92e-16,33;CL:0000404,1.92e-16,33;CL:0000117,9.33e-12,23;CL:0000337,9.33e-12,23;CL:0000393,1.02e-11,39;CL:0000211,1.02e-11,39;CL:0000221,1.62e-11,44;CL:0000133,1.62e-11,44;CL:0002319,1.82e-11,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.80e-31!73;UBERON:0005743!6.80e-31!73;UBERON:0000073!8.96e-30!75;UBERON:0001016!8.96e-30!75;UBERON:0004121!2.99e-28!102;UBERON:0000924!2.99e-28!102;UBERON:0006601!2.99e-28!102;UBERON:0002346!1.27e-25!71;UBERON:0003075!1.27e-25!71;UBERON:0007284!1.27e-25!71;UBERON:0001049!4.93e-22!52;UBERON:0005068!4.93e-22!52;UBERON:0006241!4.93e-22!52;UBERON:0007135!4.93e-22!52;UBERON:0000955!5.80e-21!50;UBERON:0006238!5.80e-21!50;UBERON:0002616!2.56e-20!49;UBERON:0000033!3.41e-20!63;UBERON:0003056!1.22e-17!49;UBERON:0003080!5.47e-17!40;UBERON:0002780!2.13e-16!39;UBERON:0001890!2.13e-16!39;UBERON:0006240!2.13e-16!39;UBERON:0002020!1.31e-15!34;UBERON:0002791!7.47e-13!29;UBERON:0003528!7.47e-13!29;UBERON:0001893!7.47e-13!29;UBERON:0000956!1.50e-08!21;UBERON:0001869!1.50e-08!21;UBERON:0000203!1.50e-08!21;UBERON:0002021!4.35e-08!10;UBERON:0000411!4.35e-08!10;UBERON:0001950!4.35e-08!10;UBERON:0002619!5.27e-08!17;UBERON:0007811!1.58e-07!86;UBERON:0000468!7.80e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.42e-34,73;UBERON:0001016,3.25e-32,75;UBERON:0004121,1.84e-27,95;UBERON:0000924,1.84e-27,95;UBERON:0006601,1.84e-27,95;UBERON:0002346,3.23e-26,64;UBERON:0003075,3.23e-26,64;UBERON:0007284,3.23e-26,64;UBERON:0000073,1.41e-25,54;UBERON:0001049,4.22e-24,52;UBERON:0005068,4.22e-24,52;UBERON:0006241,4.22e-24,52;UBERON:0007135,4.22e-24,52;UBERON:0010371,5.94e-23,73;UBERON:0000955,1.03e-20,47;UBERON:0006238,1.03e-20,47;UBERON:0002616,5.53e-20,46;UBERON:0003056,3.41e-19,49;UBERON:0003080,5.42e-19,40;UBERON:0002780,2.65e-18,39;UBERON:0001890,2.65e-18,39;UBERON:0006240,2.65e-18,39;UBERON:0002020,1.10e-17,34;UBERON:0010314,1.66e-16,92;UBERON:0003528,1.87e-14,29;UBERON:0002791,1.87e-14,29;UBERON:0001893,1.87e-14,29;UBERON:0000956,1.98e-09,21;UBERON:0001869,1.98e-09,21;UBERON:0000203,1.98e-09,21;UBERON:0002619,2.59e-09,17;UBERON:0002021,3.08e-09,10;UBERON:0000411,3.08e-09,10;UBERON:0001950,3.08e-09,10 | |||
|phase1_expression=3.52327463630547,0,0,0,0,0.671517087647559,0.233612640595526,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,14.8825757764372,0.0992909512008853,0,0.319984845586813,0.22940928106717,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.202753862439029,0,0.782391344348039,0.218025156380447,0,0.194429899074283,0.55994568650145,2.87505128729943,0,0,0,0,0,0,7.28339259094552,10.0508286061686,7.60597684207415,1.35537812827653,2.66788438833342,0.449949858640699,0,0,2.39680088414724,1.15265491596466,0.725827286159344,3.51015439662396,1.68259969081106,25.4229376119385,25.6207507503872,5.51208596467293,3.92966431174769,3.67687514644008,26.4278114398533,35.1140179734266,25.6522910537927,9.23204014111357,11.2529801630964,7.8137005583514,30.4309468911505,30.3891809417107,42.7835093775068,28.5789727909458,22.7794689278565,14.1663578827228,0.227178579999552,0.302286240427142,0,0,0,0,0,0,1.40444420131752,0,0,0,1.69012103732017,0,0,0,0,0.506719730950197,0,2.62622923353838,0,4.60170631100957,1.21439728736295,2.13125834818499,2.53677046981664,2.41156224884196,4.23319345688537,1.75933227861546,0.247194967734374,0,1.76922110389975,1.29413479957927,1.10420759230197,0,1.86391761218122,35.7192572354088,36.6531736923546,0.255457055208591,0,0,0.127070227073065,26.5129431746536,156.46520616397,23.6230181972185,139.233280474013,129.903452323808,41.7653969564716,70.0882256452713,2.03678727700633,0.497627882440372,0.758168275301024,3.36706969418358,0.260240885925407,0.459804208866946,1.0803727788321,1.35634336052144,3.94611695077702,3.58718416797579,5.90320864726292,11.1242449417777,0.215567992932842,0.756424320671277,1.40760899331159,0.657587197282725,0.556094498451196,1.39300866608867,0,0.995171334092466,0,0,0,0,0,0.180062061461015,0.23674473558521,0.196764231747404,0,0,0,0,0.329119699826961,0.164167464079095,0.162137619091711,0,0,0,146.361804200633,11.216602749342,0,0.528901133327089,4.05247676016945,2.32236671860439,1.9330119198314,1.61346819698674,0.667134131534611,1.52180500890047,0,1.97638745668813,0.754005626400808,1.98956472041151,0.779856348476481,0.898819408654221,0.864552199498777,0.597423819763102,0.189667900953082,0.685491075658373,3.38123207019241,1.01825663922657,0.581857461502877,0.561086559122548,0.505892296994058,0.147610147979602,0.156998727841375,0.123397163921801,0,0,0.393117990226406,0,0.202860121388503,0.241177159752417,0.25462585178142,0.575392274901621,0.486405680325106,0,1.43768206527355,0,0,0,0,0,0.369506380333209,0.37898282354097,1.30371981153621,1.35796068620151,0.938760993154008,1.00503754465089,0.952174563544055,0.780534591431195,0.630540576424764,0.221464689648775,1.2756381492599,0,0.690739927463582,0,0,0,0,0.275936746304732,22.9587343682543,21.332526959781,3.27869890753351,2.52470927204373,7.2566890465739,7.41833614163613,12.9254038639679,3.10659437338318,5.34716817797746,7.35998980050964,8.90583543684768,14.028281179743,8.30104333687699,35.024023489977,0.709700426041343,1.6025904330053,2.28041743095006,1.81467135269789,0,1.69946445308487,0.604647113929502,0.565815239267694,0.295301892880773,0.922305443831782,1.29214146584111,0.727067458955011,1.42598951353889,0.948110273807448,0,0,19.0646179222121,0.36012218806262,1.81102157295856,4.07240366560025,8.51233121482913,11.4156043265325,9.54384319492302,17.3545020995322,0.23467170806371,0.847328283455281,0.441056796109924,0.16488625294148,2.26050197374268,1.02531972377865,0.716234064018819,0.820704498725306,0.874442509889552,27.8137953015765,0.170870880797853,0.619160603889667,0,0.376736914009382,0.136694227721025,0,0,0,0,1.90934123603023,1.73984796469624,2.64315307264903,2.59212817972323,1.46361807210128,1.9652630737156,1.61837215661785,2.23164330458407,0.523511883968059,0.388844919875379,0,1.12738587736838,0.299033092087958,0.496375471371293,2.33341426012857,2.84151611651008,1.68956125490778,1.40828686374905,0.911430693907651,0.209718688851422,0,0,0,0.608175645870493,0.102710957164827,0.129920822977795,0.179026695667481,0,0.120195449519969,0,0,0.0762068066549998,0,0,0,0,0,0.221985953374065,0.897138566094757,0.671538465456314,6.56844619709447,2.62755465631655,0,0.428736758158132,0,93.184054031816,90.2237463554067,94.5277597175004,94.3473971066845,128.11043119711,129.172356453639,118.128937540566,109.428052383486,106.488466111288,117.531590767663,0.103787347584177,2.79317411380722,2.56100408631201,1.70174701947806,1.67690530102386,4.96377472815038,3.11145418922261,3.5025959730612,3.85103051510178,2.27427490587418,2.78827229879264,2.45214243801899,2.06011316433741,3.52138338226781,3.0440798546475,2.85776214769844,3.59241410429052,3.27945674788299,3.29668720642645,3.09117732282234,4.4573002810104,2.8396128985494,2.38436189947321,2.90692833264657,3.10560955370591,2.62305284464197,2.56099162021882,1.8414879800649,2.30866993537965,6.73370725989286,2.01679530811096,2.75812550651578,4.50154147486658,2.78886314134739,1.54325288784913,7.49431733813838,3.50897412668113,3.22306581072447,3.06061331310149,1.76473135295612,0.927471342481686 | |||
|short_description=p1@Neurl1a | |||
}} |
Revision as of 17:55, 13 September 2013
Short description: | p1@Neurl1a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Neurl1a_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 296bp_to_ENSMUST00000111808, NM_021360, uc008hut.1, uc008huu.1_5end |
EntrezGene: | Neurl1a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.92e-16 | 33 |
neuronal stem cell | 1.92e-16 | 33 |
neuroblast | 1.92e-16 | 33 |
electrically signaling cell | 1.92e-16 | 33 |
CNS neuron (sensu Vertebrata) | 9.33e-12 | 23 |
neuroblast (sensu Vertebrata) | 9.33e-12 | 23 |
electrically responsive cell | 1.02e-11 | 39 |
electrically active cell | 1.02e-11 | 39 |
ectodermal cell | 1.62e-11 | 44 |
neurectodermal cell | 1.62e-11 | 44 |
neural cell | 1.82e-11 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.42e-34 | 73 |
nervous system | 3.25e-32 | 75 |
ectoderm-derived structure | 1.84e-27 | 95 |
ectoderm | 1.84e-27 | 95 |
presumptive ectoderm | 1.84e-27 | 95 |
neurectoderm | 3.23e-26 | 64 |
neural plate | 3.23e-26 | 64 |
presumptive neural plate | 3.23e-26 | 64 |
regional part of nervous system | 1.41e-25 | 54 |
neural tube | 4.22e-24 | 52 |
neural rod | 4.22e-24 | 52 |
future spinal cord | 4.22e-24 | 52 |
neural keel | 4.22e-24 | 52 |
ecto-epithelium | 5.94e-23 | 73 |
brain | 1.03e-20 | 47 |
future brain | 1.03e-20 | 47 |
regional part of brain | 5.53e-20 | 46 |
pre-chordal neural plate | 3.41e-19 | 49 |
anterior neural tube | 5.42e-19 | 40 |
regional part of forebrain | 2.65e-18 | 39 |
forebrain | 2.65e-18 | 39 |
future forebrain | 2.65e-18 | 39 |
gray matter | 1.10e-17 | 34 |
structure with developmental contribution from neural crest | 1.66e-16 | 92 |
brain grey matter | 1.87e-14 | 29 |
regional part of telencephalon | 1.87e-14 | 29 |
telencephalon | 1.87e-14 | 29 |
cerebral cortex | 1.98e-09 | 21 |
cerebral hemisphere | 1.98e-09 | 21 |
pallium | 1.98e-09 | 21 |
regional part of cerebral cortex | 2.59e-09 | 17 |
occipital lobe | 3.08e-09 | 10 |
visual cortex | 3.08e-09 | 10 |
neocortex | 3.08e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.