FFCP PHASE1:Mm9::chr1:16646989..16647003,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=100045866,67923|HGNC=|MCL_coexpression_id=60|UniProt=P83940|association_with_transcript=-43bp_to_ENSMUST00000115352,NM_026456,uc007ajv.1_5end|description=CAGE_peak_2_at_LOC100045866_5end,CAGE_peak_3_at_Tceb1_5end|id=chr1:16646989..16647003,-|ontology_enrichment_celltype=CL:0000117!6.40e-09!23;CL:0000337!6.40e-09!23;CL:0002319!7.59e-09!43;CL:0000221!1.21e-08!44;CL:0000133!1.21e-08!44;CL:0000055!4.61e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,5.20e-09,23;CL:0000337,5.20e-09,23;CL:0002319,6.42e-09,43;CL:0000221,1.03e-08,44;CL:0000133,1.03e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.81e-14!73;UBERON:0005743!2.81e-14!73;UBERON:0000073!3.13e-14!75;UBERON:0001016!3.13e-14!75;UBERON:0001049!4.13e-14!52;UBERON:0005068!4.13e-14!52;UBERON:0006241!4.13e-14!52;UBERON:0007135!4.13e-14!52;UBERON:0002020!2.44e-13!34;UBERON:0000955!2.47e-12!50;UBERON:0006238!2.47e-12!50;UBERON:0002616!2.59e-12!49;UBERON:0002791!5.03e-11!29;UBERON:0003528!5.03e-11!29;UBERON:0001893!5.03e-11!29;UBERON:0000025!6.58e-10!114;UBERON:0004121!7.37e-10!102;UBERON:0000924!7.37e-10!102;UBERON:0006601!7.37e-10!102;UBERON:0002346!1.62e-09!71;UBERON:0003075!1.62e-09!71;UBERON:0007284!1.62e-09!71;UBERON:0004111!3.40e-09!122;UBERON:0000033!4.50e-09!63;UBERON:0003080!1.36e-08!40;UBERON:0002780!2.87e-08!39;UBERON:0001890!2.87e-08!39;UBERON:0006240!2.87e-08!39;UBERON:0003076!4.16e-07!12;UBERON:0003057!4.16e-07!12;UBERON:0000956!6.90e-07!21;UBERON:0001869!6.90e-07!21;UBERON:0000203!6.90e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.09e-14,54;UBERON:0001017,2.07e-14,73;UBERON:0001016,2.32e-14,75;UBERON:0001049,3.42e-14,52;UBERON:0005068,3.42e-14,52;UBERON:0006241,3.42e-14,52;UBERON:0007135,3.42e-14,52;UBERON:0010314,1.07e-13,92;UBERON:0002020,2.27e-13,34;UBERON:0000955,2.20e-11,47;UBERON:0006238,2.20e-11,47;UBERON:0002616,2.31e-11,46;UBERON:0003528,4.75e-11,29;UBERON:0002791,4.75e-11,29;UBERON:0001893,4.75e-11,29;UBERON:0002346,6.65e-11,64;UBERON:0003075,6.65e-11,64;UBERON:0007284,6.65e-11,64;UBERON:0004121,6.86e-11,95;UBERON:0000924,6.86e-11,95;UBERON:0006601,6.86e-11,95;UBERON:0000025,4.46e-10,114;UBERON:0010371,2.12e-09,73;UBERON:0004111,2.61e-09,122;UBERON:0003080,1.18e-08,40;UBERON:0002780,2.51e-08,39;UBERON:0001890,2.51e-08,39;UBERON:0006240,2.51e-08,39;UBERON:0003076,4.02e-07,12;UBERON:0003057,4.02e-07,12;UBERON:0000956,6.68e-07,21;UBERON:0001869,6.68e-07,21;UBERON:0000203,6.68e-07,21|phase1_expression=1.44133962394315,3.14077866875425,3.63999391511629,2.41971369045464,0.500895729946347,1.84667199103079,1.16806320297763,0.387369970324729,0.140788722151667,0.234064526321993,0.68487187290202,0.717949430958028,0.684802919724823,0.874204024189974,1.66554880907831,1.01237633694913,0.699561878128147,1.26184866143295,0.548457734422955,2.12194825899015,10.2902381082794,1.68794617041505,2.61199789138935,1.43993180514066,2.98232065387321,4.01962374880514,6.03066794622705,5.38678081714723,1.52018735565099,3.52842181663903,1.77384408524244,1.90509202037889,1.23012957516914,0,2.59966457776147,2.1610503896604,0.816677425049476,2.51118978442145,4.6880120671428,3.14114246384279,1.17646297606203,2.04913645487534,4.85510353031154,0.503587271902309,0.608261587317087,2.20256102594018,3.9119567217402,5.23260375313072,3.73466510648602,4.47188767870852,3.77963338388479,4.31257693094915,2.85230430298152,0.725362142011344,1.34437519656986,1.80081605225163,2.57880095944881,2.06268836910977,4.04632921719196,0.528990979272033,4.43681982454325,3.38844532069132,6.22506357277798,6.29929802096979,0.988866362566974,4.2628806896766,3.89480143673926,3.84218305321555,4.25127410464758,3.10513658162888,3.36519938162211,4.57041575046086,3.97563373712904,3.79721477566358,4.60058260887535,4.5960939330501,2.20231761998777,10.9811110753261,6.91229399653096,3.29715719325485,5.03182039813253,5.2091337055676,10.8881369610539,6.75315132038016,6.41752640662602,4.71405736757868,7.26095572075425,4.28718725398191,1.74170244666323,3.24957708459178,0.869593466105033,2.58127163094416,4.0798280022465,4.85732872474035,2.59910566979068,1.34408066129201,4.35377702408431,2.72688516124892,2.33807404142582,5.65343319216544,1.97180787687353,1.28326477414318,0,14.2213340630666,4.11332977921307,3.29367825117628,3.0331466700887,5.36664234679582,1.29468941823586,2.22663208597237,2.25530924795977,0.304465478312141,2.07553947530453,2.11011696773672,1.29347577849275,2.89033160058254,1.73036477414062,2.4581890676385,3.5384422077995,2.26473589926373,3.3126227769059,3.87900202508178,1.86391761218122,6.73395833126558,5.23616767033638,1.27728527604296,1.07833612055328,3.59941638596045,1.01656181658452,4.04434726393021,8.23501085073528,6.65968066198181,8.16974304903699,7.16003280524926,5.194701113989,6.97637431191358,1.93494791315601,2.23932547098167,1.0108910337347,2.73574412652416,0.780722657776222,1.60931473103431,1.26043490863744,2.26057226753573,1.97305847538851,0.768682321709099,3.09215691047105,1.5522202244340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| ||
|EntrezGene=100045866,67923 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=P83940 | |||
|association_with_transcript=-43bp_to_ENSMUST00000115352,NM_026456,uc007ajv.1_5end | |||
|description=CAGE_peak_2_at_LOC100045866_5end,CAGE_peak_3_at_Tceb1_5end | |||
|id=chr1:16646989..16647003,- | |||
|ontology_enrichment_celltype=CL:0000117!6.40e-09!23;CL:0000337!6.40e-09!23;CL:0002319!7.59e-09!43;CL:0000221!1.21e-08!44;CL:0000133!1.21e-08!44;CL:0000055!4.61e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.20e-09,23;CL:0000337,5.20e-09,23;CL:0002319,6.42e-09,43;CL:0000221,1.03e-08,44;CL:0000133,1.03e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.81e-14!73;UBERON:0005743!2.81e-14!73;UBERON:0000073!3.13e-14!75;UBERON:0001016!3.13e-14!75;UBERON:0001049!4.13e-14!52;UBERON:0005068!4.13e-14!52;UBERON:0006241!4.13e-14!52;UBERON:0007135!4.13e-14!52;UBERON:0002020!2.44e-13!34;UBERON:0000955!2.47e-12!50;UBERON:0006238!2.47e-12!50;UBERON:0002616!2.59e-12!49;UBERON:0002791!5.03e-11!29;UBERON:0003528!5.03e-11!29;UBERON:0001893!5.03e-11!29;UBERON:0000025!6.58e-10!114;UBERON:0004121!7.37e-10!102;UBERON:0000924!7.37e-10!102;UBERON:0006601!7.37e-10!102;UBERON:0002346!1.62e-09!71;UBERON:0003075!1.62e-09!71;UBERON:0007284!1.62e-09!71;UBERON:0004111!3.40e-09!122;UBERON:0000033!4.50e-09!63;UBERON:0003080!1.36e-08!40;UBERON:0002780!2.87e-08!39;UBERON:0001890!2.87e-08!39;UBERON:0006240!2.87e-08!39;UBERON:0003076!4.16e-07!12;UBERON:0003057!4.16e-07!12;UBERON:0000956!6.90e-07!21;UBERON:0001869!6.90e-07!21;UBERON:0000203!6.90e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.09e-14,54;UBERON:0001017,2.07e-14,73;UBERON:0001016,2.32e-14,75;UBERON:0001049,3.42e-14,52;UBERON:0005068,3.42e-14,52;UBERON:0006241,3.42e-14,52;UBERON:0007135,3.42e-14,52;UBERON:0010314,1.07e-13,92;UBERON:0002020,2.27e-13,34;UBERON:0000955,2.20e-11,47;UBERON:0006238,2.20e-11,47;UBERON:0002616,2.31e-11,46;UBERON:0003528,4.75e-11,29;UBERON:0002791,4.75e-11,29;UBERON:0001893,4.75e-11,29;UBERON:0002346,6.65e-11,64;UBERON:0003075,6.65e-11,64;UBERON:0007284,6.65e-11,64;UBERON:0004121,6.86e-11,95;UBERON:0000924,6.86e-11,95;UBERON:0006601,6.86e-11,95;UBERON:0000025,4.46e-10,114;UBERON:0010371,2.12e-09,73;UBERON:0004111,2.61e-09,122;UBERON:0003080,1.18e-08,40;UBERON:0002780,2.51e-08,39;UBERON:0001890,2.51e-08,39;UBERON:0006240,2.51e-08,39;UBERON:0003076,4.02e-07,12;UBERON:0003057,4.02e-07,12;UBERON:0000956,6.68e-07,21;UBERON:0001869,6.68e-07,21;UBERON:0000203,6.68e-07,21 | |||
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| |||
|short_description=p2@LOC100045866,p3@Tceb1 | |||
}} |
Revision as of 19:31, 13 September 2013
Short description: | p2@LOC100045866, p3@Tceb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LOC100045866_5end, CAGE_peak_3_at_Tceb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | -43bp_to_ENSMUST00000115352, NM_026456, uc007ajv.1_5end |
EntrezGene: | 100045866,67923 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.20e-09 | 23 |
neuroblast (sensu Vertebrata) | 5.20e-09 | 23 |
neural cell | 6.42e-09 | 43 |
ectodermal cell | 1.03e-08 | 44 |
neurectodermal cell | 1.03e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.09e-14 | 54 |
central nervous system | 2.07e-14 | 73 |
nervous system | 2.32e-14 | 75 |
neural tube | 3.42e-14 | 52 |
neural rod | 3.42e-14 | 52 |
future spinal cord | 3.42e-14 | 52 |
neural keel | 3.42e-14 | 52 |
structure with developmental contribution from neural crest | 1.07e-13 | 92 |
gray matter | 2.27e-13 | 34 |
brain | 2.20e-11 | 47 |
future brain | 2.20e-11 | 47 |
regional part of brain | 2.31e-11 | 46 |
brain grey matter | 4.75e-11 | 29 |
regional part of telencephalon | 4.75e-11 | 29 |
telencephalon | 4.75e-11 | 29 |
neurectoderm | 6.65e-11 | 64 |
neural plate | 6.65e-11 | 64 |
presumptive neural plate | 6.65e-11 | 64 |
ectoderm-derived structure | 6.86e-11 | 95 |
ectoderm | 6.86e-11 | 95 |
presumptive ectoderm | 6.86e-11 | 95 |
tube | 4.46e-10 | 114 |
ecto-epithelium | 2.12e-09 | 73 |
anatomical conduit | 2.61e-09 | 122 |
anterior neural tube | 1.18e-08 | 40 |
regional part of forebrain | 2.51e-08 | 39 |
forebrain | 2.51e-08 | 39 |
future forebrain | 2.51e-08 | 39 |
posterior neural tube | 4.02e-07 | 12 |
chordal neural plate | 4.02e-07 | 12 |
cerebral cortex | 6.68e-07 | 21 |
cerebral hemisphere | 6.68e-07 | 21 |
pallium | 6.68e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.