FFCP PHASE1:Mm9::chr1:44159222..44159243,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=75623|HGNC=|MCL_coexpression_id=2072|UniProt=Q3TUU5|association_with_transcript=0bp_to_ENSMUST00000027215,NM_029368,uc007avz.2,uc007awa.2_5end|description=CAGE_peak_1_at_1700029F09Rik_5end|id=chr1:44159222..44159243,-|ontology_enrichment_celltype=CL:0000988!4.80e-10!32;CL:0002032!4.80e-10!32;CL:0000037!4.80e-10!32;CL:0000566!4.80e-10!32;CL:0000837!4.80e-10!32;CL:0000838!1.12e-07!12;CL:0000542!1.62e-07!13;CL:0000051!1.62e-07!13;CL:0000084!4.98e-07!11;CL:0000827!4.98e-07!11;CL:0002031!6.71e-07!25|ontology_enrichment_celltype_v019_2=CL:0000988,4.78e-10,32;CL:0002032,4.78e-10,32;CL:0000037,4.78e-10,32;CL:0000837,4.78e-10,32;CL:0000838,1.12e-07,12;CL:0000542,1.61e-07,13;CL:0000051,1.61e-07,13;CL:0000084,4.98e-07,11;CL:0000827,4.98e-07,11;CL:0002031,6.68e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001048!2.36e-10!147;UBERON:0000926!3.30e-09!193;UBERON:0004120!3.30e-09!193;UBERON:0006603!3.30e-09!193;UBERON:0004177!1.13e-08!29;UBERON:0002323!1.43e-08!37;UBERON:0004458!1.43e-08!37;UBERON:0002553!3.63e-08!39;UBERON:0003886!6.56e-08!38;UBERON:0000077!6.68e-08!97;UBERON:0001041!8.36e-08!92;UBERON:0000072!1.47e-07!27;UBERON:0002193!1.61e-07!48;UBERON:0003408!2.01e-07!24;UBERON:0000473!2.19e-07!14;UBERON:0002390!2.33e-07!45;UBERON:0003061!2.33e-07!45;UBERON:0002370!3.61e-07!23;UBERON:0000974!3.61e-07!23;UBERON:0004807!3.61e-07!23;UBERON:0005058!3.61e-07!23;UBERON:0003351!3.61e-07!23;UBERON:0009113!3.61e-07!23;UBERON:0003295!3.61e-07!23;UBERON:0009722!3.61e-07!23;UBERON:0005562!3.61e-07!23;UBERON:0007690!3.61e-07!23;UBERON:0005057!4.65e-07!51;UBERON:0002405!5.81e-07!70;UBERON:0000464!9.47e-07!57;UBERON:0004119!9.53e-07!130;UBERON:0000925!9.53e-07!130;UBERON:0006595!9.53e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.09e-08,29;UBERON:0005057,1.09e-08,29;UBERON:0002323,1.43e-08,37;UBERON:0004458,1.43e-08,37;UBERON:0001048,2.84e-08,134;UBERON:0000077,3.15e-08,35;UBERON:0002553,3.63e-08,39;UBERON:0003886,6.56e-08,38;UBERON:0000072,1.43e-07,27;UBERON:0002193,1.62e-07,48;UBERON:0002405,1.62e-07,48;UBERON:0003408,1.95e-07,24;UBERON:0000473,2.19e-07,14;UBERON:0002390,2.34e-07,45;UBERON:0003061,2.34e-07,45;UBERON:0002370,3.50e-07,23;UBERON:0000974,3.50e-07,23;UBERON:0004807,3.50e-07,23;UBERON:0005058,3.50e-07,23;UBERON:0003351,3.50e-07,23;UBERON:0009113,3.50e-07,23;UBERON:0003295,3.50e-07,23;UBERON:0009722,3.50e-07,23;UBERON:0005562,3.50e-07,23;UBERON:0007690,3.50e-07,23|phase1_expression=6.40595388419176,6.2815573375085,6.3699893514535,3.32710632437513,3.50627010962443,11.5836697619204,9.34450562382103,13.9453189316902,78.2785295163267,65.5380673701582,33.7299397404245,29.1168380332978,16.2640693434645,14.0746847894586,17.9879271380458,17.2103977281352,14.6907994406911,13.8803352757625,17.0021897671116,17.3999757237192,20.9206493771632,26.2128111170337,28.7319768052829,9.43955294481099,10.0940083669555,5.7423196411502,11.1998119001359,11.8509177977239,6.46079626151671,11.3413558391969,11.9734475753865,15.8757668364908,12.916360539276,15.8481681015439,15.8868390863201,24.1040235769814,20.4169356262369,6.69650609179052,15.626706890476,13.6116173433188,4.70585190424811,4.78131839470912,8.25367600152961,4.40638862914521,4.35920804243913,5.68994931701213,2.34717403304412,3.05235218932625,3.73466510648602,2.91644848611425,3.07970127575798,0,43.6234775750115,27.5637613964311,32.9371923159615,5.14518872071894,4.87106847895886,3.09403255366465,2.63011399117477,2.11596391708813,0.633831403506179,4.06613438482959,0,1.7997994345628,0.988866362566974,2.8419204597844,2.69640099466564,0.384218305321555,8.50254820929517,4.86021377994086,4.83747411108179,2.57085885963423,2.42955395046775,8.45186514583183,6.80502844229478,3.67687514644008,2.20231761998777,1.78762273319263,1.84327839907492,3.16527090552465,2.8361169516747,3.12548022334056,3.35019598801657,1.12552522006336,1.68078072554491,4.12480019663135,3.70166370077668,2.79599168737951,13.4792624133068,9.21973033302783,9.85539261585705,6.88339101585109,25.8389106808945,7.01614149129162,5.84798775702902,7.6164570806547,6.17955448579708,7.15807354827843,7.53379413348319,7.77347063922748,6.76048414928066,1.28326477414318,0,7.11066703153331,18.4017384859532,17.4818307177818,22.2430755806505,8.44960709921044,11.3932668804756,2.3750742250372,9.71517829890361,5.78484408793068,5.76538743140146,5.72746034099966,6.46737889246376,3.89566433121994,26.2026665798436,2.74738778147832,7.07688441559899,5.82360659810673,8.83366073841574,6.30337829075789,0,2.34224637609238,3.77004072264219,7.66371165625774,25.520621519761,38.3937747835781,28.3366606372934,1.79748767285787,0.915001205637253,5.52879149296603,2.25971616249959,2.30143911597297,2.70124457927428,1.62241263067758,7.94347038032467,9.08170885453679,3.28539585963777,3.99839526184301,16.0048144844126,17.4725599369439,12.9644733459851,11.7549757911858,9.5251098811859,12.6832583082001,8.52685693493532,5.43277078551933,8.83828771024653,10.9681526497335,9.50136070485324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| ||
|EntrezGene=75623 | |||
|HGNC= | |||
|MCL_coexpression_id=2072 | |||
|UniProt=Q3TUU5 | |||
|association_with_transcript=0bp_to_ENSMUST00000027215,NM_029368,uc007avz.2,uc007awa.2_5end | |||
|description=CAGE_peak_1_at_1700029F09Rik_5end | |||
|id=chr1:44159222..44159243,- | |||
|ontology_enrichment_celltype=CL:0000988!4.80e-10!32;CL:0002032!4.80e-10!32;CL:0000037!4.80e-10!32;CL:0000566!4.80e-10!32;CL:0000837!4.80e-10!32;CL:0000838!1.12e-07!12;CL:0000542!1.62e-07!13;CL:0000051!1.62e-07!13;CL:0000084!4.98e-07!11;CL:0000827!4.98e-07!11;CL:0002031!6.71e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,4.78e-10,32;CL:0002032,4.78e-10,32;CL:0000037,4.78e-10,32;CL:0000837,4.78e-10,32;CL:0000838,1.12e-07,12;CL:0000542,1.61e-07,13;CL:0000051,1.61e-07,13;CL:0000084,4.98e-07,11;CL:0000827,4.98e-07,11;CL:0002031,6.68e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001048!2.36e-10!147;UBERON:0000926!3.30e-09!193;UBERON:0004120!3.30e-09!193;UBERON:0006603!3.30e-09!193;UBERON:0004177!1.13e-08!29;UBERON:0002323!1.43e-08!37;UBERON:0004458!1.43e-08!37;UBERON:0002553!3.63e-08!39;UBERON:0003886!6.56e-08!38;UBERON:0000077!6.68e-08!97;UBERON:0001041!8.36e-08!92;UBERON:0000072!1.47e-07!27;UBERON:0002193!1.61e-07!48;UBERON:0003408!2.01e-07!24;UBERON:0000473!2.19e-07!14;UBERON:0002390!2.33e-07!45;UBERON:0003061!2.33e-07!45;UBERON:0002370!3.61e-07!23;UBERON:0000974!3.61e-07!23;UBERON:0004807!3.61e-07!23;UBERON:0005058!3.61e-07!23;UBERON:0003351!3.61e-07!23;UBERON:0009113!3.61e-07!23;UBERON:0003295!3.61e-07!23;UBERON:0009722!3.61e-07!23;UBERON:0005562!3.61e-07!23;UBERON:0007690!3.61e-07!23;UBERON:0005057!4.65e-07!51;UBERON:0002405!5.81e-07!70;UBERON:0000464!9.47e-07!57;UBERON:0004119!9.53e-07!130;UBERON:0000925!9.53e-07!130;UBERON:0006595!9.53e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.09e-08,29;UBERON:0005057,1.09e-08,29;UBERON:0002323,1.43e-08,37;UBERON:0004458,1.43e-08,37;UBERON:0001048,2.84e-08,134;UBERON:0000077,3.15e-08,35;UBERON:0002553,3.63e-08,39;UBERON:0003886,6.56e-08,38;UBERON:0000072,1.43e-07,27;UBERON:0002193,1.62e-07,48;UBERON:0002405,1.62e-07,48;UBERON:0003408,1.95e-07,24;UBERON:0000473,2.19e-07,14;UBERON:0002390,2.34e-07,45;UBERON:0003061,2.34e-07,45;UBERON:0002370,3.50e-07,23;UBERON:0000974,3.50e-07,23;UBERON:0004807,3.50e-07,23;UBERON:0005058,3.50e-07,23;UBERON:0003351,3.50e-07,23;UBERON:0009113,3.50e-07,23;UBERON:0003295,3.50e-07,23;UBERON:0009722,3.50e-07,23;UBERON:0005562,3.50e-07,23;UBERON:0007690,3.50e-07,23 | |||
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| |||
|short_description=p1@1700029F09Rik | |||
}} |
Revision as of 20:26, 13 September 2013
Short description: | p1@1700029F09Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_1700029F09Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:2072 |
Association with transcript: | 0bp_to_ENSMUST00000027215, NM_029368, uc007avz.2, uc007awa.2_5end |
EntrezGene: | 1700029F09Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 4.78e-10 | 32 |
hematopoietic oligopotent progenitor cell | 4.78e-10 | 32 |
hematopoietic stem cell | 4.78e-10 | 32 |
hematopoietic multipotent progenitor cell | 4.78e-10 | 32 |
lymphoid lineage restricted progenitor cell | 1.12e-07 | 12 |
lymphocyte | 1.61e-07 | 13 |
common lymphoid progenitor | 1.61e-07 | 13 |
T cell | 4.98e-07 | 11 |
pro-T cell | 4.98e-07 | 11 |
hematopoietic lineage restricted progenitor cell | 6.68e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 1.09e-08 | 29 |
immune organ | 1.09e-08 | 29 |
body cavity | 1.43e-08 | 37 |
body cavity or lining | 1.43e-08 | 37 |
primordium | 2.84e-08 | 134 |
mixed endoderm/mesoderm-derived structure | 3.15e-08 | 35 |
anatomical cavity | 3.63e-08 | 39 |
body cavity precursor | 6.56e-08 | 38 |
segment of respiratory tract | 1.43e-07 | 27 |
hemolymphoid system | 1.62e-07 | 48 |
immune system | 1.62e-07 | 48 |
gland of gut | 1.95e-07 | 24 |
testis | 2.19e-07 | 14 |
hematopoietic system | 2.34e-07 | 45 |
blood island | 2.34e-07 | 45 |
thymus | 3.50e-07 | 23 |
neck | 3.50e-07 | 23 |
respiratory system epithelium | 3.50e-07 | 23 |
hemolymphoid system gland | 3.50e-07 | 23 |
pharyngeal epithelium | 3.50e-07 | 23 |
thymic region | 3.50e-07 | 23 |
pharyngeal gland | 3.50e-07 | 23 |
entire pharyngeal arch endoderm | 3.50e-07 | 23 |
thymus primordium | 3.50e-07 | 23 |
early pharyngeal endoderm | 3.50e-07 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.