FFCP PHASE1:Mm9::chr3:122574540..122574567,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1529|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:122574540..122574567,-|id=chr3:122574540..122574567,-|ontology_enrichment_celltype=CL:0000239!2.28e-14!6;CL:0000677!2.28e-14!6;CL:0000212!2.28e-14!6;CL:0000584!2.28e-14!6;CL:0000075!2.76e-12!7;CL:0000473!2.57e-11!3;CL:0000627!2.57e-11!3;CL:0000682!2.57e-11!3;CL:0002563!1.67e-09!9;CL:0002251!1.67e-09!9;CL:0000066!7.52e-08!25|ontology_enrichment_celltype_v019_2=CL:0000682,1.95e-13,3;CL:0000239,1.31e-11,6;CL:0000677,1.31e-11,6;CL:0000584,1.31e-11,6;CL:0000075,5.67e-10,7;CL:0002563,8.78e-08,9;CL:0002251,8.78e-08,9;CL:0000066,1.28e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!3.73e-26!15;UBERON:0000160!2.87e-23!43;UBERON:0001242!1.52e-20!13;UBERON:0000060!1.52e-20!13;UBERON:0001262!1.52e-20!13;UBERON:0004786!1.52e-20!13;UBERON:0005409!5.20e-16!59;UBERON:0004923!1.32e-15!24;UBERON:0000331!3.83e-11!3;UBERON:0002116!3.83e-11!3;UBERON:0001204!3.83e-11!3;UBERON:0001168!3.83e-11!3;UBERON:0003350!1.67e-09!9;UBERON:0004808!1.67e-09!9;UBERON:0001277!1.67e-09!9;UBERON:0000485!9.98e-08!11;UBERON:0001962!1.42e-07!2;UBERON:0001961!1.42e-07!2;UBERON:0001744!1.42e-07!2;UBERON:0001007!3.25e-07!128;UBERON:0001555!3.25e-07!128;UBERON:0007026!3.25e-07!128;UBERON:0004119!4.82e-07!130;UBERON:0000925!4.82e-07!130;UBERON:0006595!4.82e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.42e-25,31;UBERON:0000344,1.06e-21,15;UBERON:0005409,6.48e-16,47;UBERON:0001242,1.23e-15,13;UBERON:0001262,1.23e-15,13;UBERON:0004786,1.23e-15,13;UBERON:0004923,4.35e-13,24;UBERON:0002108,3.31e-10,4;UBERON:0001962,6.93e-09,2;UBERON:0001961,6.93e-09,2;UBERON:0001744,6.93e-09,2;UBERON:0003350,8.78e-08,9;UBERON:0004808,8.78e-08,9;UBERON:0001277,8.78e-08,9;UBERON:0001007,7.41e-07,116;UBERON:0001555,7.41e-07,116;UBERON:0007026,7.41e-07,116;UBERON:0000331,8.85e-07,3;UBERON:0002116,8.85e-07,3;UBERON:0001204,8.85e-07,3;UBERON:0001168,8.85e-07,3|phase1_expression=0,10.8182376368202,4.54999239389536,6.35174843744343,7.51343594919521,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23989391910769,2.06468352960453,10.3361753540704,5.59990595006797,6.89507944594845,4.94060890586572,21.926621289114,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26399978118577,0,0,0,0,0,0,0,0,0,0,1.7127581957859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.3710797541842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.5646574044329,17.4537373997939,0,0,0,0,0,0,11.3886974770683,0.164698954724011,0,0,0,6.29173586057955,17.0749059401008,8.56307474993779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145346416632329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr3:122574540..122574567,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1529 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:122574540..122574567,- | |||
|id=chr3:122574540..122574567,- | |||
|ontology_enrichment_celltype=CL:0000239!2.28e-14!6;CL:0000677!2.28e-14!6;CL:0000212!2.28e-14!6;CL:0000584!2.28e-14!6;CL:0000075!2.76e-12!7;CL:0000473!2.57e-11!3;CL:0000627!2.57e-11!3;CL:0000682!2.57e-11!3;CL:0002563!1.67e-09!9;CL:0002251!1.67e-09!9;CL:0000066!7.52e-08!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,1.95e-13,3;CL:0000239,1.31e-11,6;CL:0000677,1.31e-11,6;CL:0000584,1.31e-11,6;CL:0000075,5.67e-10,7;CL:0002563,8.78e-08,9;CL:0002251,8.78e-08,9;CL:0000066,1.28e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!3.73e-26!15;UBERON:0000160!2.87e-23!43;UBERON:0001242!1.52e-20!13;UBERON:0000060!1.52e-20!13;UBERON:0001262!1.52e-20!13;UBERON:0004786!1.52e-20!13;UBERON:0005409!5.20e-16!59;UBERON:0004923!1.32e-15!24;UBERON:0000331!3.83e-11!3;UBERON:0002116!3.83e-11!3;UBERON:0001204!3.83e-11!3;UBERON:0001168!3.83e-11!3;UBERON:0003350!1.67e-09!9;UBERON:0004808!1.67e-09!9;UBERON:0001277!1.67e-09!9;UBERON:0000485!9.98e-08!11;UBERON:0001962!1.42e-07!2;UBERON:0001961!1.42e-07!2;UBERON:0001744!1.42e-07!2;UBERON:0001007!3.25e-07!128;UBERON:0001555!3.25e-07!128;UBERON:0007026!3.25e-07!128;UBERON:0004119!4.82e-07!130;UBERON:0000925!4.82e-07!130;UBERON:0006595!4.82e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.42e-25,31;UBERON:0000344,1.06e-21,15;UBERON:0005409,6.48e-16,47;UBERON:0001242,1.23e-15,13;UBERON:0001262,1.23e-15,13;UBERON:0004786,1.23e-15,13;UBERON:0004923,4.35e-13,24;UBERON:0002108,3.31e-10,4;UBERON:0001962,6.93e-09,2;UBERON:0001961,6.93e-09,2;UBERON:0001744,6.93e-09,2;UBERON:0003350,8.78e-08,9;UBERON:0004808,8.78e-08,9;UBERON:0001277,8.78e-08,9;UBERON:0001007,7.41e-07,116;UBERON:0001555,7.41e-07,116;UBERON:0007026,7.41e-07,116;UBERON:0000331,8.85e-07,3;UBERON:0002116,8.85e-07,3;UBERON:0001204,8.85e-07,3;UBERON:0001168,8.85e-07,3 | |||
|phase1_expression=0,10.8182376368202,4.54999239389536,6.35174843744343,7.51343594919521,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23989391910769,2.06468352960453,10.3361753540704,5.59990595006797,6.89507944594845,4.94060890586572,21.926621289114,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26399978118577,0,0,0,0,0,0,0,0,0,0,1.7127581957859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.3710797541842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.5646574044329,17.4537373997939,0,0,0,0,0,0,11.3886974770683,0.164698954724011,0,0,0,6.29173586057955,17.0749059401008,8.56307474993779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145346416632329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:122574540..122574567,- | |||
}} |
Revision as of 01:24, 14 September 2013
Short description: | p@chr3:122574540..122574567, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:122574540..122574567, - |
Coexpression cluster: | MCL_coexpression_mm9:1529 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 1.95e-13 | 3 |
brush border epithelial cell | 1.31e-11 | 6 |
gut absorptive cell | 1.31e-11 | 6 |
enterocyte | 1.31e-11 | 6 |
columnar/cuboidal epithelial cell | 5.67e-10 | 7 |
intestinal epithelial cell | 8.78e-08 | 9 |
epithelial cell of alimentary canal | 8.78e-08 | 9 |
epithelial cell | 1.28e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.42e-25 | 31 |
mucosa | 1.06e-21 | 15 |
gastrointestinal system | 6.48e-16 | 47 |
intestinal mucosa | 1.23e-15 | 13 |
wall of intestine | 1.23e-15 | 13 |
gastrointestinal system mucosa | 1.23e-15 | 13 |
organ component layer | 4.35e-13 | 24 |
small intestine | 3.31e-10 | 4 |
gut-associated lymphoid tissue | 6.93e-09 | 2 |
mucosa-associated lymphoid tissue | 6.93e-09 | 2 |
lymphoid tissue | 6.93e-09 | 2 |
epithelium of mucosa | 8.78e-08 | 9 |
gastrointestinal system epithelium | 8.78e-08 | 9 |
intestinal epithelium | 8.78e-08 | 9 |
digestive system | 7.41e-07 | 116 |
digestive tract | 7.41e-07 | 116 |
primitive gut | 7.41e-07 | 116 |
ileal mucosa | 8.85e-07 | 3 |
ileum | 8.85e-07 | 3 |
mucosa of small intestine | 8.85e-07 | 3 |
wall of small intestine | 8.85e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.