FFCP PHASE1:Hg19::chr7:55086794..55086803,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1956|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3236|TSSclassifier=S|UniProt=P00533|association_with_transcript=0bp_to_ENST00000275493_5end|coexpression_cluster_id=C2899|description=CAGE_peak_2_at_EGFR_5end|id=chr7:55086794..55086803,+|ontology_enrichment_celltype=CL:0000066!8.57e-16!254;CL:0000220!7.31e-11!246;CL:0002321!1.69e-10!248;CL:0000055!5.19e-10!180;CL:0000223!5.85e-10!59;CL:0000057!8.07e-10!75;CL:0002076!1.07e-09!43;CL:0000077!1.74e-07!19|ontology_enrichment_celltype_v019=CL:0000077;5.97e-08;19!CL:0002076;6.95e-08;42!CL:0002368;1.53e-07;13|ontology_enrichment_celltype_v019_2=CL:0000066,8.15e-18,253;CL:0000223,1.52e-09,58;CL:0002076,1.56e-09,42;CL:0002321,2.68e-09,250;CL:0000077,2.85e-08,19;CL:0002368,1.83e-07,13;CL:0000057,6.94e-07,76;CL:0000076,8.41e-07,63|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:1749!1.54e-07!14|ontology_enrichment_disease_v019=DOID:1749;1.38e-08;14|ontology_enrichment_disease_v019_2=DOID:1749,1.51e-08,14|ontology_enrichment_uberon=UBERON:0004119!3.77e-19!169;UBERON:0000925!3.77e-19!169;UBERON:0006595!3.77e-19!169;UBERON:0000481!4.10e-18!347;UBERON:0000475!3.00e-15!365;UBERON:0001007!7.76e-15!155;UBERON:0001555!7.76e-15!155;UBERON:0007026!7.76e-15!155;UBERON:0003104!1.13e-14!238;UBERON:0009142!1.13e-14!238;UBERON:0003102!9.42e-12!95;UBERON:0001048!5.90e-11!168;UBERON:0001004!1.02e-10!72;UBERON:0000077!4.52e-10!130;UBERON:0000467!1.19e-09!625;UBERON:0000064!1.29e-09!219;UBERON:0005256!1.38e-09!143;UBERON:0002100!1.62e-09!216;UBERON:0000480!1.87e-09!626;UBERON:0001444!7.48e-09!48;UBERON:0004921!9.28e-09!129;UBERON:0004185!9.28e-09!129;UBERON:0000062!5.34e-08!511;UBERON:0000477!5.88e-08!286;UBERON:0000165!6.39e-08!28;UBERON:0000930!6.39e-08!28;UBERON:0000468!6.56e-08!659;UBERON:0000119!1.18e-07!312;UBERON:0000161!1.19e-07!35;UBERON:0001041!1.71e-07!98;UBERON:0000486!2.11e-07!82;UBERON:0000065!2.27e-07!53;UBERON:0000483!3.18e-07!309;UBERON:0000923!3.52e-07!604;UBERON:0005291!3.52e-07!604;UBERON:0006598!3.52e-07!604;UBERON:0002532!3.52e-07!604;UBERON:0002050!3.78e-07!605;UBERON:0005423!3.78e-07!605;UBERON:0005911!4.46e-07!82;UBERON:0004923!7.75e-07!57|ontology_enrichment_uberon_v019=UBERON:0003729;8.39e-09;13!UBERON:0000165;6.56e-08;28!UBERON:0000344;2.10e-07;20!UBERON:0000065;3.24e-07;44|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.02e-15,160;UBERON:0000925,1.02e-15,160;UBERON:0006595,1.02e-15,160;UBERON:0001007,1.22e-11,145;UBERON:0001555,1.22e-11,145;UBERON:0007026,1.22e-11,145;UBERON:0003102,2.41e-11,99;UBERON:0001004,3.73e-11,74;UBERON:0003729,9.23e-09,13;UBERON:0000033,2.59e-08,56;UBERON:0004923,5.47e-08,66;UBERON:0001444,5.56e-08,49;UBERON:0000065,9.51e-08,54;UBERON:0000165,1.04e-07,29;UBERON:0000930,1.04e-07,29;UBERON:0000153,2.23e-07,62;UBERON:0007811,2.23e-07,62;UBERON:0000161,2.60e-07,36;UBERON:0008947,3.19e-07,38;UBERON:0003258,3.19e-07,38;UBERON:0000344,3.45e-07,20;UBERON:0001048,4.79e-07,160|phase1_expression=0.363356758541113,0.856402095563933,1.40954404095971,0,0.893922188854576,0,2.53299878168311,2.52687949370732,1.82829939739887,2.21160542851358,4.88460817580699,3.71350332621293,1.84636884759917,1.48519623552056,1.32558950291166,0.672325146451775,0.602694528023977,2.19093027116212,1.46379839637152,1.60057375499824,4.48801520737357,1.25381888591235,0.572471974262113,0.410623275218653,0.502170558379211,0,0,0,0,0,0.154816123316076,4.59710612239464,11.4458249135735,13.3111443660044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.767175371061182,2.1686349143074,1.50401373190767,3.0417768981773,0,0.973269740605272,7.18464610446916,10.4212816807405,13.7022265681277,1.11332214173056,8.01449634243593,3.33705998505986,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0.275118041940067,0.626984899610432,0,0.71153252537342,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,11.3384453557059,0.993943903390637,3.92554586160197,8.73900593367244,6.59724227722272,2.83734705758686,1.68203280042692,1.06748995729705,2.22000793575444,2.8008993185979,0.942974704487816,0.817309515567294,4.23800797405808,6.33793516927999,2.34321431833797,4.68240115245481,4.56377457235559,3.88566569434683,0.352303495931295,1.78060238804945,1.54495887372473,5.30800845262722,1.47401180774122,4.33968280938215,5.94001428641027,3.21447008062124,1.82032272387605,1.43723628363248,2.02003336744879,1.00094815897571,8.03485934904131,1.75591048352335,2.45190236639216,6.46023653298366,0.907457465280168,1.61450672119976,0.427114777637135,1.48352330811693,3.30100205692843,0.721367704669072,3.09168648054755,1.11670113798954,3.88185564154912,0.584622030967192,4.29137416214995,1.56484827691909,2.10139873864455,2.13005755509969,0.604512589365842,1.18692414617341,9.85630351132814,11.1825909442242,16.0610573417842,0.121973706129595,0,0,0,0,0,0,0,1.38134921352481,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1956 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3236 | |||
|TSSclassifier=S | |||
|UniProt=P00533 | |||
|association_with_transcript=0bp_to_ENST00000275493_5end | |||
|coexpression_cluster_id=C2899 | |||
|description=CAGE_peak_2_at_EGFR_5end | |||
|id=chr7:55086794..55086803,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.57e-16!254;CL:0000220!7.31e-11!246;CL:0002321!1.69e-10!248;CL:0000055!5.19e-10!180;CL:0000223!5.85e-10!59;CL:0000057!8.07e-10!75;CL:0002076!1.07e-09!43;CL:0000077!1.74e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0000077;5.97e-08;19!CL:0002076;6.95e-08;42!CL:0002368;1.53e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.15e-18,253;CL:0000223,1.52e-09,58;CL:0002076,1.56e-09,42;CL:0002321,2.68e-09,250;CL:0000077,2.85e-08,19;CL:0002368,1.83e-07,13;CL:0000057,6.94e-07,76;CL:0000076,8.41e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!1.54e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.38e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.51e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.77e-19!169;UBERON:0000925!3.77e-19!169;UBERON:0006595!3.77e-19!169;UBERON:0000481!4.10e-18!347;UBERON:0000475!3.00e-15!365;UBERON:0001007!7.76e-15!155;UBERON:0001555!7.76e-15!155;UBERON:0007026!7.76e-15!155;UBERON:0003104!1.13e-14!238;UBERON:0009142!1.13e-14!238;UBERON:0003102!9.42e-12!95;UBERON:0001048!5.90e-11!168;UBERON:0001004!1.02e-10!72;UBERON:0000077!4.52e-10!130;UBERON:0000467!1.19e-09!625;UBERON:0000064!1.29e-09!219;UBERON:0005256!1.38e-09!143;UBERON:0002100!1.62e-09!216;UBERON:0000480!1.87e-09!626;UBERON:0001444!7.48e-09!48;UBERON:0004921!9.28e-09!129;UBERON:0004185!9.28e-09!129;UBERON:0000062!5.34e-08!511;UBERON:0000477!5.88e-08!286;UBERON:0000165!6.39e-08!28;UBERON:0000930!6.39e-08!28;UBERON:0000468!6.56e-08!659;UBERON:0000119!1.18e-07!312;UBERON:0000161!1.19e-07!35;UBERON:0001041!1.71e-07!98;UBERON:0000486!2.11e-07!82;UBERON:0000065!2.27e-07!53;UBERON:0000483!3.18e-07!309;UBERON:0000923!3.52e-07!604;UBERON:0005291!3.52e-07!604;UBERON:0006598!3.52e-07!604;UBERON:0002532!3.52e-07!604;UBERON:0002050!3.78e-07!605;UBERON:0005423!3.78e-07!605;UBERON:0005911!4.46e-07!82;UBERON:0004923!7.75e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0003729;8.39e-09;13!UBERON:0000165;6.56e-08;28!UBERON:0000344;2.10e-07;20!UBERON:0000065;3.24e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.02e-15,160;UBERON:0000925,1.02e-15,160;UBERON:0006595,1.02e-15,160;UBERON:0001007,1.22e-11,145;UBERON:0001555,1.22e-11,145;UBERON:0007026,1.22e-11,145;UBERON:0003102,2.41e-11,99;UBERON:0001004,3.73e-11,74;UBERON:0003729,9.23e-09,13;UBERON:0000033,2.59e-08,56;UBERON:0004923,5.47e-08,66;UBERON:0001444,5.56e-08,49;UBERON:0000065,9.51e-08,54;UBERON:0000165,1.04e-07,29;UBERON:0000930,1.04e-07,29;UBERON:0000153,2.23e-07,62;UBERON:0007811,2.23e-07,62;UBERON:0000161,2.60e-07,36;UBERON:0008947,3.19e-07,38;UBERON:0003258,3.19e-07,38;UBERON:0000344,3.45e-07,20;UBERON:0001048,4.79e-07,160 | |||
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| |||
|short_description=p2@EGFR | |||
}} |
Revision as of 01:36, 14 September 2013
Short description: | p2@EGFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_EGFR_5end |
Coexpression cluster: | C2899_epidermoid_oral_cervical_Small_large_placenta_mucinous |
Association with transcript: | 0bp_to_ENST00000275493_5end |
EntrezGene: | EGFR |
HGNC: | 3236 |
UniProt: | P00533 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.15e-18 | 253 |
endodermal cell | 1.52e-09 | 58 |
endo-epithelial cell | 1.56e-09 | 42 |
embryonic cell | 2.68e-09 | 250 |
mesothelial cell | 2.85e-08 | 19 |
respiratory epithelial cell | 1.83e-07 | 13 |
fibroblast | 6.94e-07 | 76 |
squamous epithelial cell | 8.41e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.02e-15 | 160 |
endoderm | 1.02e-15 | 160 |
presumptive endoderm | 1.02e-15 | 160 |
digestive system | 1.22e-11 | 145 |
digestive tract | 1.22e-11 | 145 |
primitive gut | 1.22e-11 | 145 |
surface structure | 2.41e-11 | 99 |
respiratory system | 3.73e-11 | 74 |
mouth mucosa | 9.23e-09 | 13 |
head | 2.59e-08 | 56 |
organ component layer | 5.47e-08 | 66 |
subdivision of head | 5.56e-08 | 49 |
respiratory tract | 9.51e-08 | 54 |
mouth | 1.04e-07 | 29 |
stomodeum | 1.04e-07 | 29 |
anterior region of body | 2.23e-07 | 62 |
craniocervical region | 2.23e-07 | 62 |
orifice | 2.60e-07 | 36 |
respiratory primordium | 3.19e-07 | 38 |
endoderm of foregut | 3.19e-07 | 38 |
mucosa | 3.45e-07 | 20 |
primordium | 4.79e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.51e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.