FFCP PHASE1:Mm9::chr3:158225163..158225254,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=242274|HGNC=|MCL_coexpression_id=2|UniProt=E9Q6L9,Q80TE7,B9EHV0|association_with_transcript=0bp_to_ENSMUST00000106044,NM_001081358,uc008rvw.1,uc008rvx.1,uc012dac.1_5end|description=CAGE_peak_3_at_Lrrc7_5end|id=chr3:158225163..158225254,-|ontology_enrichment_celltype=CL:0000117!2.33e-17!23;CL:0000337!2.33e-17!23;CL:0000540!5.72e-13!33;CL:0000047!5.72e-13!33;CL:0000031!5.72e-13!33;CL:0000404!5.72e-13!33;CL:0000393!1.77e-09!39;CL:0000211!1.77e-09!39;CL:0000221!6.37e-08!44;CL:0000133!6.37e-08!44;CL:0002319!9.33e-08!43|ontology_enrichment_celltype_v019_2=CL:0000117,4.01e-29,23;CL:0000337,4.01e-29,23;CL:0000540,1.73e-18,33;CL:0000047,1.73e-18,33;CL:0000031,1.73e-18,33;CL:0000404,1.73e-18,33;CL:0000393,9.46e-15,39;CL:0000211,9.46e-15,39;CL:0002319,7.53e-13,43;CL:0000221,1.98e-12,44;CL:0000133,1.98e-12,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.35e-24!52;UBERON:0005068!1.35e-24!52;UBERON:0006241!1.35e-24!52;UBERON:0007135!1.35e-24!52;UBERON:0001017!1.79e-24!73;UBERON:0005743!1.79e-24!73;UBERON:0002020!2.04e-24!34;UBERON:0000073!3.04e-23!75;UBERON:0001016!3.04e-23!75;UBERON:0000955!3.15e-23!50;UBERON:0006238!3.15e-23!50;UBERON:0000033!5.93e-23!63;UBERON:0002616!2.38e-22!49;UBERON:0003056!9.20e-21!49;UBERON:0003080!1.71e-20!40;UBERON:0002791!1.85e-20!29;UBERON:0003528!1.85e-20!29;UBERON:0001893!1.85e-20!29;UBERON:0002780!1.18e-19!39;UBERON:0001890!1.18e-19!39;UBERON:0006240!1.18e-19!39;UBERON:0002346!1.42e-19!71;UBERON:0003075!1.42e-19!71;UBERON:0007284!1.42e-19!71;UBERON:0004121!2.35e-17!102;UBERON:0000924!2.35e-17!102;UBERON:0006601!2.35e-17!102;UBERON:0000956!1.36e-14!21;UBERON:0001869!1.36e-14!21;UBERON:0000203!1.36e-14!21;UBERON:0007811!1.94e-12!86;UBERON:0002619!5.36e-12!17;UBERON:0000153!8.96e-12!94;UBERON:0002021!6.31e-11!10;UBERON:0000411!6.31e-11!10;UBERON:0001950!6.31e-11!10;UBERON:0002420!4.80e-07!8;UBERON:0007245!4.80e-07!8;UBERON:0010009!4.80e-07!8;UBERON:0010011!4.80e-07!8;UBERON:0000454!4.80e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.11e-43,34;UBERON:0000073,5.05e-42,54;UBERON:0001049,7.17e-39,52;UBERON:0005068,7.17e-39,52;UBERON:0006241,7.17e-39,52;UBERON:0007135,7.17e-39,52;UBERON:0001017,4.93e-38,73;UBERON:0001016,1.01e-36,75;UBERON:0003528,3.49e-36,29;UBERON:0002791,3.49e-36,29;UBERON:0001893,3.49e-36,29;UBERON:0000955,6.93e-32,47;UBERON:0006238,6.93e-32,47;UBERON:0003080,2.63e-31,40;UBERON:0002616,2.36e-30,46;UBERON:0002780,8.61e-30,39;UBERON:0001890,8.61e-30,39;UBERON:0006240,8.61e-30,39;UBERON:0002346,1.05e-29,64;UBERON:0003075,1.05e-29,64;UBERON:0007284,1.05e-29,64;UBERON:0004121,1.20e-26,95;UBERON:0000924,1.20e-26,95;UBERON:0006601,1.20e-26,95;UBERON:0000956,4.36e-25,21;UBERON:0001869,4.36e-25,21;UBERON:0000203,4.36e-25,21;UBERON:0010371,8.14e-25,73;UBERON:0003056,4.88e-24,49;UBERON:0002619,2.12e-22,17;UBERON:0002021,3.02e-19,10;UBERON:0000411,3.02e-19,10;UBERON:0001950,3.02e-19,10;UBERON:0010314,1.18e-17,92;UBERON:0000025,2.22e-12,114;UBERON:0002420,6.29e-12,8;UBERON:0007245,6.29e-12,8;UBERON:0010009,6.29e-12,8;UBERON:0010011,6.29e-12,8;UBERON:0000454,6.29e-12,8;UBERON:0004111,6.06e-11,122;UBERON:0002240,8.78e-10,6;UBERON:0005174,8.78e-10,6;UBERON:0001137,8.78e-10,6;UBERON:0001948,2.36e-08,5;UBERON:0002315,2.36e-08,5;UBERON:0000369,7.34e-08,5;UBERON:0002435,7.34e-08,5;UBERON:0000204,7.34e-08,5;UBERON:0010082,7.34e-08,5;UBERON:0003076,8.97e-08,12;UBERON:0003057,8.97e-08,12;UBERON:0011216,1.96e-07,194;UBERON:0002950,3.77e-07,4;UBERON:0001891,3.77e-07,4;UBERON:0009616,3.77e-07,4;UBERON:0010286,3.77e-07,4|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,2.21112554392781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22548106945558,2.11596391708813,3.80298842103708,0,0,0,0,0,0,0,2.07379224616955,2.02508907497536,0.630974884054146,2.28520787523043,3.97563373712904,1.5923803897944,1.34183659425531,6.43453150627015,3.30347642998166,12.6410464704336,8.75557239560588,1.84640802822271,1.37231465403614,1.04182674111352,1.95428099300967,3.93933827022176,5.04234217663473,4.12480019663135,4.6982654663704,1.67759501242771,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0.14084341977668,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0.41889341362691,0,0,0,0,7.78911324905078,23.33253074375,3.5183218591602,16.5133104182663,24.0372529890511,11.6361304953354,16.2241263067758,0,0.124406970610093,0,0,0.650602214813519,0.229902104433473,0.180062129805349,0.150704817835715,0.408218994907967,0.2562274405697,0.281105173679186,0,0,0,0.351902248327898,0.219195732427575,0.834141747676794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.8231958851302,2.88132914661996,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0.164698954724011,0,0,0.19496408711912,0,0,0,0,0,0,0,0.193952487167626,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.568474235311454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24770825982909,3.39913891117389,0,0,0,0,0,0,0.222798674082394,0.283076530788832,0,0.292255857911312,0,13.1741739732941,0,0,0,0,0,0.242780636154981,0,0.188605079755898,0.590603785761546,1.53717573971964,0.516856586336442,0.363533729477506,0.356497378384721,1.26414703174326,0,0,0,0,0.258717367565509,0,0.532020700926821,0.713475270408282,0.329098041204242,0,0,0,0,0,0,0,0,0,0,4.07935664423121,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0.218362563746178,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.772758376128762,0,0,0,0,28.8023439734704,34.5243927380383,25.2074025913335,42.1040296742035,34.9392085083028,31.7265436903674,33.7511250115903,24.3173449741079,18.1256963593682,21.2281727818246,0,0,0.170733605754134,0.729320151204882,0,0.183843508450014,0.666740183404846,0.618105171716683,0.962757628775446,0.252697211763798,0.50695859978048,0.943131706930381,0.468207537349412,0.960377286073039,0.861532034334199,0.952587382566147,0.695305955669133,1.15745532278223,0.412085900803307,0.735994600671987,1.02860775715625,0.70990322463735,0.238436189947321,0.581385666529314,1.2234219453993,0.761531471025089,0.914639864363863,0.526139422875686,1.35804113845862,1.12228454331548,0.474540072496697,0.788035859004508,0.409231043169689,0.929621047115796,1.15743966588685,0.499621155875892,1.16965804222704,0.859484216193193,0,0,0|short_description=p3@Lrrc7}} | ||
|EntrezGene=242274 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=E9Q6L9,Q80TE7,B9EHV0 | |||
|association_with_transcript=0bp_to_ENSMUST00000106044,NM_001081358,uc008rvw.1,uc008rvx.1,uc012dac.1_5end | |||
|description=CAGE_peak_3_at_Lrrc7_5end | |||
|id=chr3:158225163..158225254,- | |||
|ontology_enrichment_celltype=CL:0000117!2.33e-17!23;CL:0000337!2.33e-17!23;CL:0000540!5.72e-13!33;CL:0000047!5.72e-13!33;CL:0000031!5.72e-13!33;CL:0000404!5.72e-13!33;CL:0000393!1.77e-09!39;CL:0000211!1.77e-09!39;CL:0000221!6.37e-08!44;CL:0000133!6.37e-08!44;CL:0002319!9.33e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.01e-29,23;CL:0000337,4.01e-29,23;CL:0000540,1.73e-18,33;CL:0000047,1.73e-18,33;CL:0000031,1.73e-18,33;CL:0000404,1.73e-18,33;CL:0000393,9.46e-15,39;CL:0000211,9.46e-15,39;CL:0002319,7.53e-13,43;CL:0000221,1.98e-12,44;CL:0000133,1.98e-12,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.35e-24!52;UBERON:0005068!1.35e-24!52;UBERON:0006241!1.35e-24!52;UBERON:0007135!1.35e-24!52;UBERON:0001017!1.79e-24!73;UBERON:0005743!1.79e-24!73;UBERON:0002020!2.04e-24!34;UBERON:0000073!3.04e-23!75;UBERON:0001016!3.04e-23!75;UBERON:0000955!3.15e-23!50;UBERON:0006238!3.15e-23!50;UBERON:0000033!5.93e-23!63;UBERON:0002616!2.38e-22!49;UBERON:0003056!9.20e-21!49;UBERON:0003080!1.71e-20!40;UBERON:0002791!1.85e-20!29;UBERON:0003528!1.85e-20!29;UBERON:0001893!1.85e-20!29;UBERON:0002780!1.18e-19!39;UBERON:0001890!1.18e-19!39;UBERON:0006240!1.18e-19!39;UBERON:0002346!1.42e-19!71;UBERON:0003075!1.42e-19!71;UBERON:0007284!1.42e-19!71;UBERON:0004121!2.35e-17!102;UBERON:0000924!2.35e-17!102;UBERON:0006601!2.35e-17!102;UBERON:0000956!1.36e-14!21;UBERON:0001869!1.36e-14!21;UBERON:0000203!1.36e-14!21;UBERON:0007811!1.94e-12!86;UBERON:0002619!5.36e-12!17;UBERON:0000153!8.96e-12!94;UBERON:0002021!6.31e-11!10;UBERON:0000411!6.31e-11!10;UBERON:0001950!6.31e-11!10;UBERON:0002420!4.80e-07!8;UBERON:0007245!4.80e-07!8;UBERON:0010009!4.80e-07!8;UBERON:0010011!4.80e-07!8;UBERON:0000454!4.80e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.11e-43,34;UBERON:0000073,5.05e-42,54;UBERON:0001049,7.17e-39,52;UBERON:0005068,7.17e-39,52;UBERON:0006241,7.17e-39,52;UBERON:0007135,7.17e-39,52;UBERON:0001017,4.93e-38,73;UBERON:0001016,1.01e-36,75;UBERON:0003528,3.49e-36,29;UBERON:0002791,3.49e-36,29;UBERON:0001893,3.49e-36,29;UBERON:0000955,6.93e-32,47;UBERON:0006238,6.93e-32,47;UBERON:0003080,2.63e-31,40;UBERON:0002616,2.36e-30,46;UBERON:0002780,8.61e-30,39;UBERON:0001890,8.61e-30,39;UBERON:0006240,8.61e-30,39;UBERON:0002346,1.05e-29,64;UBERON:0003075,1.05e-29,64;UBERON:0007284,1.05e-29,64;UBERON:0004121,1.20e-26,95;UBERON:0000924,1.20e-26,95;UBERON:0006601,1.20e-26,95;UBERON:0000956,4.36e-25,21;UBERON:0001869,4.36e-25,21;UBERON:0000203,4.36e-25,21;UBERON:0010371,8.14e-25,73;UBERON:0003056,4.88e-24,49;UBERON:0002619,2.12e-22,17;UBERON:0002021,3.02e-19,10;UBERON:0000411,3.02e-19,10;UBERON:0001950,3.02e-19,10;UBERON:0010314,1.18e-17,92;UBERON:0000025,2.22e-12,114;UBERON:0002420,6.29e-12,8;UBERON:0007245,6.29e-12,8;UBERON:0010009,6.29e-12,8;UBERON:0010011,6.29e-12,8;UBERON:0000454,6.29e-12,8;UBERON:0004111,6.06e-11,122;UBERON:0002240,8.78e-10,6;UBERON:0005174,8.78e-10,6;UBERON:0001137,8.78e-10,6;UBERON:0001948,2.36e-08,5;UBERON:0002315,2.36e-08,5;UBERON:0000369,7.34e-08,5;UBERON:0002435,7.34e-08,5;UBERON:0000204,7.34e-08,5;UBERON:0010082,7.34e-08,5;UBERON:0003076,8.97e-08,12;UBERON:0003057,8.97e-08,12;UBERON:0011216,1.96e-07,194;UBERON:0002950,3.77e-07,4;UBERON:0001891,3.77e-07,4;UBERON:0009616,3.77e-07,4;UBERON:0010286,3.77e-07,4 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,2.21112554392781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22548106945558,2.11596391708813,3.80298842103708,0,0,0,0,0,0,0,2.07379224616955,2.02508907497536,0.630974884054146,2.28520787523043,3.97563373712904,1.5923803897944,1.34183659425531,6.43453150627015,3.30347642998166,12.6410464704336,8.75557239560588,1.84640802822271,1.37231465403614,1.04182674111352,1.95428099300967,3.93933827022176,5.04234217663473,4.12480019663135,4.6982654663704,1.67759501242771,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0.14084341977668,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0.41889341362691,0,0,0,0,7.78911324905078,23.33253074375,3.5183218591602,16.5133104182663,24.0372529890511,11.6361304953354,16.2241263067758,0,0.124406970610093,0,0,0.650602214813519,0.229902104433473,0.180062129805349,0.150704817835715,0.408218994907967,0.2562274405697,0.281105173679186,0,0,0,0.351902248327898,0.219195732427575,0.834141747676794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.8231958851302,2.88132914661996,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0.164698954724011,0,0,0.19496408711912,0,0,0,0,0,0,0,0.193952487167626,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.568474235311454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24770825982909,3.39913891117389,0,0,0,0,0,0,0.222798674082394,0.283076530788832,0,0.292255857911312,0,13.1741739732941,0,0,0,0,0,0.242780636154981,0,0.188605079755898,0.590603785761546,1.53717573971964,0.516856586336442,0.363533729477506,0.356497378384721,1.26414703174326,0,0,0,0,0.258717367565509,0,0.532020700926821,0.713475270408282,0.329098041204242,0,0,0,0,0,0,0,0,0,0,4.07935664423121,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0.218362563746178,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.772758376128762,0,0,0,0,28.8023439734704,34.5243927380383,25.2074025913335,42.1040296742035,34.9392085083028,31.7265436903674,33.7511250115903,24.3173449741079,18.1256963593682,21.2281727818246,0,0,0.170733605754134,0.729320151204882,0,0.183843508450014,0.666740183404846,0.618105171716683,0.962757628775446,0.252697211763798,0.50695859978048,0.943131706930381,0.468207537349412,0.960377286073039,0.861532034334199,0.952587382566147,0.695305955669133,1.15745532278223,0.412085900803307,0.735994600671987,1.02860775715625,0.70990322463735,0.238436189947321,0.581385666529314,1.2234219453993,0.761531471025089,0.914639864363863,0.526139422875686,1.35804113845862,1.12228454331548,0.474540072496697,0.788035859004508,0.409231043169689,0.929621047115796,1.15743966588685,0.499621155875892,1.16965804222704,0.859484216193193,0,0,0 | |||
|short_description=p3@Lrrc7 | |||
}} |
Revision as of 01:55, 14 September 2013
Short description: | p3@Lrrc7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lrrc7_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000106044, NM_001081358, uc008rvw.1, uc008rvx.1, uc012dac.1_5end |
EntrezGene: | Lrrc7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.01e-29 | 23 |
neuroblast (sensu Vertebrata) | 4.01e-29 | 23 |
neuron | 1.73e-18 | 33 |
neuronal stem cell | 1.73e-18 | 33 |
neuroblast | 1.73e-18 | 33 |
electrically signaling cell | 1.73e-18 | 33 |
electrically responsive cell | 9.46e-15 | 39 |
electrically active cell | 9.46e-15 | 39 |
neural cell | 7.53e-13 | 43 |
ectodermal cell | 1.98e-12 | 44 |
neurectodermal cell | 1.98e-12 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.