FFCP PHASE1:Mm9::chr4:100449246..100449261,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=320508|HGNC=|UniProt=Q6PDJ1|association_with_transcript=-18bp_to_ENSMUST00000030257,ENSMUST00000097955_5end|description=CAGE_peak_2_at_Cachd1_5end|id=chr4:100449246..100449261,+|ontology_enrichment_celltype=CL:0000117!1.51e-12!23;CL:0000337!1.51e-12!23;CL:0000540!3.78e-11!33;CL:0000047!3.78e-11!33;CL:0000031!3.78e-11!33;CL:0000404!3.78e-11!33;CL:0000393!2.89e-09!39;CL:0000211!2.89e-09!39;CL:0000221!2.07e-08!44;CL:0000133!2.07e-08!44;CL:0002319!2.88e-08!43|ontology_enrichment_celltype_v019_2=CL:0000117,1.06e-14,23;CL:0000337,1.06e-14,23;CL:0000540,1.68e-11,33;CL:0000047,1.68e-11,33;CL:0000031,1.68e-11,33;CL:0000404,1.68e-11,33;CL:0000393,4.83e-09,39;CL:0000211,4.83e-09,39;CL:0000221,2.83e-08,44;CL:0000133,2.83e-08,44;CL:0002319,4.20e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000468!2.54e-09!333;UBERON:0000922!3.60e-07!328;UBERON:0001017!6.68e-07!73;UBERON:0005743!6.68e-07!73|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.31e-07,73|phase1_expression=1.60148847104794,0.348975407639361,0.454999239389536,1.51232105653415,0,1.00727563147134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0.47997726838022,0.45881856213434,0,0.430761996159075,0.215471232685889,1.33016393619462,0.756090389279792,0,0,0,0,1.1554064790051,0.664938581433969,0.816677425049476,0,0,0,0,0,0,0.503587271902309,0.709638518536602,0.183546752161682,0,1.30815093828268,0.878744730937887,1.74986909166855,0.839918529752175,0,0,0,0,1.02903774414379,1.14613375975503,0.515672092277442,4.85559506063035,7.40587370980846,6.33831403506179,1.0165335962074,0.889294796111139,0,0,0.7104801149461,1.19840044207362,0.384218305321555,2.38486108309499,3.64516033495565,2.10324961351382,5.42736870367227,1.76694832761291,1.34739879136449,0.479227355091182,1.83843757322004,4.40463523997555,4.72443150915195,4.45458946443106,5.27545150920775,4.7573574673253,2.6045668527838,4.4669279840221,2.25105044012672,3.20876320331301,3.24091444021034,2.98980529678116,1.86399445825301,0.227178579999552,0.604572480854284,1.15945795480671,0,0,0,0,0,0.421333260395256,0.511290967734173,0.259786004602869,0,1.40843419776681,1.28326477414318,0,0,0.216491041011214,0.253359865475099,0.505524445014783,0.68510327831436,0,0.593768556259299,1.04091196059682,0.304465478312141,0.691846491768175,0.452167921657868,1.41106448562846,0.753999547978053,0.247194967734374,0.578397427679647,0,0.808834249737046,0.220841518460394,0.969750506270444,1.86391761218122,0.292780797011547,0.209446706813455,1.02182822083437,0,0,0,3.74476598512057,0.457500602818626,0.628271760564322,0.695297280769106,1.27857728665165,2.0778804455956,1.78465389374533,2.54598409625791,0.746441823660558,1.51633655060205,0.841767423545896,1.43132487258974,1.60931473103431,0.720248519221397,1.20563854268572,0.544291993210623,0.896796041993948,1.12442069471675,0.776110112217047,2.15567992932842,3.59301552318857,2.46331573829528,1.53437012699302,1.94633074457919,1.74126083261083,1.23469281844766,2.9855140022774,0,0,0,1.65700618028402,0.938104239924385,0.180062061461015,0.710234206755631,0.787056926989615,0.925602677324269,2.09280550275367,0.804820204198858,0.817357396570186,0.329119699826961,0.656669856316381,0.648550476366846,0.146199987425332,0.219550115291051,0.671032093801859,2.52347938276953,3.49875682089567,0.660837565967596,0,1.06644125267617,1.62565670302307,2.96395161040815,2.42020229548011,1.11189021922435,0.951128130562796,0.949058123089023,1.15289268306808,1.50801125280162,2.18852119245266,1.9496408711912,0,0.216138049874694,0.199141273254367,2.0863469104839,1.48523066392647,3.38123207019241,1.62921062276251,1.74557238450863,2.66516115583211,1.45444035385792,1.18088118383682,0.627994911365499,0.616985819609003,0.296452627087149,0.667380422864376,1.17935397067922,0,0,0,0,0.575392274901621,0,0,0,0.372140947668503,0.624075346229121,0.252578877947112,0,0,1.29327233116623,1.89491411770485,1.95557971730431,0.848725428875941,1.87752198630802,1.67506257441816,1.42826184531608,1.56106918286239,1.41871629695572,1.7717175171902,1.43509291791738,1.3109065177259,1.03610989119537,0.433947175744535,0,0,0,0.551873492609465,2.0871576698413,2.10981035865966,0.163934945376675,0.504941854408746,0.94652465824877,1.56175497718655,1.93881057959519,0.955875191810208,0.222798674082394,0.283076530788832,1.61924280669958,1.16902343164525,0.790575555893047,1.60660658210904,1.41940085208269,2.13678724400706,3.58351310577867,2.47455184458803,3.98235415019888,0.728341908464944,0.302323556964751,0.754420319023592,2.06711325016541,1.22974059177571,0.775284879504663,1.09060118843252,2.49548164869305,0.948110273807448,1.05418608574999,0,0.340439605753788,0.18006109403131,0.776152102696527,0.428674070063185,1.59606210278046,1.07021290561242,0.329098041204242,0.304464949114599,0.704015124191131,0.42366414172764,0.882113592219848,1.81374878235628,2.74489525383039,1.5078231232039,2.26807453605959,1.47726809770555,1.7488850197791,1.66882771809459,0.170870880797853,1.23832120777933,0.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| ||
|EntrezGene=320508 | |||
|HGNC= | |||
|UniProt=Q6PDJ1 | |||
|association_with_transcript=-18bp_to_ENSMUST00000030257,ENSMUST00000097955_5end | |||
|description=CAGE_peak_2_at_Cachd1_5end | |||
|id=chr4:100449246..100449261,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.51e-12!23;CL:0000337!1.51e-12!23;CL:0000540!3.78e-11!33;CL:0000047!3.78e-11!33;CL:0000031!3.78e-11!33;CL:0000404!3.78e-11!33;CL:0000393!2.89e-09!39;CL:0000211!2.89e-09!39;CL:0000221!2.07e-08!44;CL:0000133!2.07e-08!44;CL:0002319!2.88e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.06e-14,23;CL:0000337,1.06e-14,23;CL:0000540,1.68e-11,33;CL:0000047,1.68e-11,33;CL:0000031,1.68e-11,33;CL:0000404,1.68e-11,33;CL:0000393,4.83e-09,39;CL:0000211,4.83e-09,39;CL:0000221,2.83e-08,44;CL:0000133,2.83e-08,44;CL:0002319,4.20e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.54e-09!333;UBERON:0000922!3.60e-07!328;UBERON:0001017!6.68e-07!73;UBERON:0005743!6.68e-07!73 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.31e-07,73 | |||
|phase1_expression=1.60148847104794,0.348975407639361,0.454999239389536,1.51232105653415,0,1.00727563147134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0.47997726838022,0.45881856213434,0,0.430761996159075,0.215471232685889,1.33016393619462,0.756090389279792,0,0,0,0,1.1554064790051,0.664938581433969,0.816677425049476,0,0,0,0,0,0,0.503587271902309,0.709638518536602,0.183546752161682,0,1.30815093828268,0.878744730937887,1.74986909166855,0.839918529752175,0,0,0,0,1.02903774414379,1.14613375975503,0.515672092277442,4.85559506063035,7.40587370980846,6.33831403506179,1.0165335962074,0.889294796111139,0,0,0.7104801149461,1.19840044207362,0.384218305321555,2.38486108309499,3.64516033495565,2.10324961351382,5.42736870367227,1.76694832761291,1.34739879136449,0.479227355091182,1.83843757322004,4.40463523997555,4.72443150915195,4.45458946443106,5.27545150920775,4.7573574673253,2.6045668527838,4.4669279840221,2.25105044012672,3.20876320331301,3.24091444021034,2.98980529678116,1.86399445825301,0.227178579999552,0.604572480854284,1.15945795480671,0,0,0,0,0,0.421333260395256,0.511290967734173,0.259786004602869,0,1.40843419776681,1.28326477414318,0,0,0.216491041011214,0.253359865475099,0.505524445014783,0.68510327831436,0,0.593768556259299,1.04091196059682,0.304465478312141,0.691846491768175,0.452167921657868,1.41106448562846,0.753999547978053,0.247194967734374,0.578397427679647,0,0.808834249737046,0.220841518460394,0.969750506270444,1.86391761218122,0.292780797011547,0.209446706813455,1.02182822083437,0,0,0,3.74476598512057,0.457500602818626,0.628271760564322,0.695297280769106,1.27857728665165,2.0778804455956,1.78465389374533,2.54598409625791,0.746441823660558,1.51633655060205,0.841767423545896,1.43132487258974,1.60931473103431,0.720248519221397,1.20563854268572,0.544291993210623,0.896796041993948,1.12442069471675,0.776110112217047,2.15567992932842,3.59301552318857,2.46331573829528,1.53437012699302,1.94633074457919,1.74126083261083,1.23469281844766,2.9855140022774,0,0,0,1.65700618028402,0.938104239924385,0.180062061461015,0.710234206755631,0.787056926989615,0.925602677324269,2.09280550275367,0.804820204198858,0.817357396570186,0.329119699826961,0.656669856316381,0.648550476366846,0.146199987425332,0.219550115291051,0.671032093801859,2.52347938276953,3.49875682089567,0.660837565967596,0,1.06644125267617,1.62565670302307,2.96395161040815,2.42020229548011,1.11189021922435,0.951128130562796,0.949058123089023,1.15289268306808,1.50801125280162,2.18852119245266,1.9496408711912,0,0.216138049874694,0.199141273254367,2.0863469104839,1.48523066392647,3.38123207019241,1.62921062276251,1.74557238450863,2.66516115583211,1.45444035385792,1.18088118383682,0.627994911365499,0.616985819609003,0.296452627087149,0.667380422864376,1.17935397067922,0,0,0,0,0.575392274901621,0,0,0,0.372140947668503,0.624075346229121,0.252578877947112,0,0,1.29327233116623,1.89491411770485,1.95557971730431,0.848725428875941,1.87752198630802,1.67506257441816,1.42826184531608,1.56106918286239,1.41871629695572,1.7717175171902,1.43509291791738,1.3109065177259,1.03610989119537,0.433947175744535,0,0,0,0.551873492609465,2.0871576698413,2.10981035865966,0.163934945376675,0.504941854408746,0.94652465824877,1.56175497718655,1.93881057959519,0.955875191810208,0.222798674082394,0.283076530788832,1.61924280669958,1.16902343164525,0.790575555893047,1.60660658210904,1.41940085208269,2.13678724400706,3.58351310577867,2.47455184458803,3.98235415019888,0.728341908464944,0.302323556964751,0.754420319023592,2.06711325016541,1.22974059177571,0.775284879504663,1.09060118843252,2.49548164869305,0.948110273807448,1.05418608574999,0,0.340439605753788,0.18006109403131,0.776152102696527,0.428674070063185,1.59606210278046,1.07021290561242,0.329098041204242,0.304464949114599,0.704015124191131,0.42366414172764,0.882113592219848,1.81374878235628,2.74489525383039,1.5078231232039,2.26807453605959,1.47726809770555,1.7488850197791,1.66882771809459,0.170870880797853,1.23832120777933,0.740778109478847,0,0.136694227721025,0,0,0,0,0,2.05618395827738,2.84647253977588,1.51207477150522,1.04544148007234,1.52853794622324,1.07891477107857,1.90102948168273,0.523511883968059,1.8146096260851,0,0,1.04661582230785,1.32366792365678,0.388902376688095,1.03327858782185,1.01373675294467,1.05621514781179,0.39061315453185,0.629156066554265,0.241584120826006,0.576060012515731,0.316011120628178,0.202725215290164,0.718976700153791,0.649604114888975,0.537080087002444,0.993406773906324,0.360586348559907,0.295379054349154,0.201932899896295,0.15241361331,0.201652370273681,0.194915761479505,0.0962118416403295,0.116876902181569,0.680191150845634,0,0.179427713218951,0,0.965947970160952,0.563047426353546,2.01466786693992,1.07184189539533,2.00628841614145,0,0.920650473014354,0,1.3748254587495,0,0,1.35004500046361,1.35096360967266,0.453142408984205,0.51776031175182,0.415149390336707,5.98537310101547,1.70733605754134,0.729320151204882,0.628839487883947,0.919217542250071,1.77797382241292,1.03017528619447,1.60459604795908,1.768880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| |||
|short_description=p2@Cachd1 | |||
}} | |||
Revision as of 03:13, 14 September 2013
| Short description: | p2@Cachd1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Cachd1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -18bp_to_ENSMUST00000030257, ENSMUST00000097955_5end |
| EntrezGene: | Cachd1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 1.06e-14 | 23 |
| neuroblast (sensu Vertebrata) | 1.06e-14 | 23 |
| neuron | 1.68e-11 | 33 |
| neuronal stem cell | 1.68e-11 | 33 |
| neuroblast | 1.68e-11 | 33 |
| electrically signaling cell | 1.68e-11 | 33 |
| electrically responsive cell | 4.83e-09 | 39 |
| electrically active cell | 4.83e-09 | 39 |
| ectodermal cell | 2.83e-08 | 44 |
| neurectodermal cell | 2.83e-08 | 44 |
| neural cell | 4.20e-08 | 43 |
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 9.31e-07 | 73 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
