FFCP PHASE1:Hg19::chr8:128306991..128307011,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C4726|description=CAGE_peak_at_chr8:128306991..128307011,-|id=chr8:128306991..128307011,-|ontology_enrichment_celltype=CL:0000066!2.92e-32!254;CL:0002076!2.38e-13!43;CL:0000220!2.62e-12!246;CL:0002321!4.79e-12!248;CL:0000223!6.38e-11!59;CL:0002149!9.41e-09!6;CL:0002255!9.41e-09!6;CL:0000076!3.09e-08!62;CL:0000548!1.86e-07!679;CL:0000004!1.86e-07!679;CL:0000255!1.86e-07!679;CL:0000012!2.91e-07!682|ontology_enrichment_celltype_v019=CL:0000083;5.79e-23;4|ontology_enrichment_celltype_v019_2=CL:0000083,6.74e-23,4;CL:0000066,3.85e-13,253;CL:0000076,2.51e-09,63;CL:0000223,1.13e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!6.48e-27!106;DOID:0050687!9.42e-19!143;DOID:299!2.15e-15!25;DOID:1749!8.33e-12!14;DOID:3001!9.41e-09!6;DOID:14566!1.82e-08!239;DOID:162!1.36e-07!235|ontology_enrichment_disease_v019=DOID:1749;1.02e-34;14!DOID:1793;5.79e-23;4!DOID:4074;4.94e-21;2!DOID:4905;4.94e-21;2!DOID:3498;4.94e-21;2!DOID:4929;1.57e-20;2!DOID:3493;1.57e-20;2!DOID:170;1.58e-15;6!DOID:299;8.12e-10;25!DOID:305;4.82e-09;106|ontology_enrichment_disease_v019_2=DOID:1749,8.78e-35,14;DOID:305,8.06e-25,106;DOID:1793,6.74e-23,4;DOID:4074,4.70e-21,2;DOID:4905,4.70e-21,2;DOID:3498,4.70e-21,2;DOID:3493,8.62e-21,2;DOID:4929,2.35e-20,2;DOID:0050687,9.27e-18,143;DOID:170,1.75e-15,6;DOID:299,7.74e-10,25;DOID:162,9.67e-10,235;DOID:14566,1.75e-09,239|ontology_enrichment_uberon=UBERON:0000065!1.65e-09!53;UBERON:0000072!5.80e-09!46;UBERON:0001737!2.83e-08!9;UBERON:0004119!3.25e-08!169;UBERON:0000925!3.25e-08!169;UBERON:0006595!3.25e-08!169;UBERON:0003104!3.34e-08!238;UBERON:0009142!3.34e-08!238;UBERON:0001004!5.97e-08!72;UBERON:0000077!1.19e-07!130;UBERON:0001557!2.28e-07!19;UBERON:0008947!9.29e-07!38;UBERON:0003258!9.29e-07!38|ontology_enrichment_uberon_v019=UBERON:0004913;3.81e-11;1!UBERON:0003703;3.81e-11;1!UBERON:0001174;3.81e-11;1!UBERON:0004914;3.81e-11;1!UBERON:0002394;6.48e-11;4!UBERON:0003928;6.48e-11;4!UBERON:0001264;1.53e-09;10|ontology_enrichment_uberon_v019_2=UBERON:0004913,4.44e-11,1;UBERON:0003703,4.44e-11,1;UBERON:0001174,4.44e-11,1;UBERON:0004914,4.44e-11,1;UBERON:0001264,1.63e-09,10;UBERON:0002394,1.63e-07,6;UBERON:0003928,1.63e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0.263766978228454,0,0,0,0.602694528023977,0,0,0,0.408001382488506,0,0.572471974262113,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,1.37559020970034,0.626984899610432,0.516833518338658,0,0,0.402829317109147,0,0,0,0.81014194788176,0.357198913136319,0.22452937262617,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0.132409180813219,0,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0.236613600079688,0.168584690078102,0.723033089650446,0.110293972732394,1.08939722046203,0.474541238222193,0.404493924480493,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0.201057944823262,0.462942225792648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.425325291727159,0.716468181622786,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0.355391948742546,0.791951872933429,0.301439377059586,0,0,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0.519254429183621,0.116210378459959,0.120859449591622,0.200506470303285,1.19705285616665,0,0,0,0,0.308061348417659,0,0,0,0,0.340187410553031,0,0,0,0,0.509752546090077,0.831076008928724,0.447749509444357,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0.096670718292122,0.154048617114644,0.460511024178389,0.275673144969061,0,0.580066775656914,0.170453254832202,0,0.495854746082934,0,0.127612712494584,0.2023155617111,0,0,0,0,0.532306030317022,0,0.37064843820784,0,0.372158369359667,0,0,0.255897791311334,0,0,0,0,0,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0.405820753925408,0,0,0,0,0,0,0,0,0.379473173765715,0.349934720244983,0.48111056362756,0,1.08890984861323,0,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,0,0,0,0,0,0,4.01138275443188,0,0,0,0,0,0,2.24670877868317,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21787692703798,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,4.89698424477443,0,0,0,0,0,0,0,0,0,0,0,0,3.7176277597097,1.21390189767046,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0.554698692052555,0.867798691675654,0,2.26353937109047,0,0.171986032471617,0.0967563312890851,0,0.0821154570532092,0,0,0,0.411125773940253,0,0,0,0.320635281006135,0.213452994739353,0,0.432271251462318,0,0,2.88109595976299,0.124252535565433,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0.335434687599266,0,0,0.105600336519406,0,2.49489756515279,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0,0,0.171086837884329,0.704815022316672,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0.214821114084977,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0.245772908753719,0.422624246717254,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0.733714394086716,3.81234698296116,0,0,0,0.0752103283492573,0.20170506870352,0,0,0.49131575253029,1.18284868973636,0.0675375846183947,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0,0,0.354581522651905,0.889851215136553,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0.17071847709395,0,0,0.354996002191696,0.0852134047591577,0,0.9164274741762,0.31020638566432,0.955538938977433,0.671132590786754,1.27595303699816,1.70685094975177,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42843150884526,3.17605384544123,0.641930933513346,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305966489225945,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0.0673520530145875,0.143444410785353,0,0.651226148887796,0.106727345877715,0,1.16772762738563,0,0,0,0,0,0|short_description=p@chr8:128306991..128307011,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4726 | |||
|description=CAGE_peak_at_chr8:128306991..128307011,- | |||
|id=chr8:128306991..128307011,- | |||
|ontology_enrichment_celltype=CL:0000066!2.92e-32!254;CL:0002076!2.38e-13!43;CL:0000220!2.62e-12!246;CL:0002321!4.79e-12!248;CL:0000223!6.38e-11!59;CL:0002149!9.41e-09!6;CL:0002255!9.41e-09!6;CL:0000076!3.09e-08!62;CL:0000548!1.86e-07!679;CL:0000004!1.86e-07!679;CL:0000255!1.86e-07!679;CL:0000012!2.91e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000083;5.79e-23;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000083,6.74e-23,4;CL:0000066,3.85e-13,253;CL:0000076,2.51e-09,63;CL:0000223,1.13e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!6.48e-27!106;DOID:0050687!9.42e-19!143;DOID:299!2.15e-15!25;DOID:1749!8.33e-12!14;DOID:3001!9.41e-09!6;DOID:14566!1.82e-08!239;DOID:162!1.36e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.02e-34;14!DOID:1793;5.79e-23;4!DOID:4074;4.94e-21;2!DOID:4905;4.94e-21;2!DOID:3498;4.94e-21;2!DOID:4929;1.57e-20;2!DOID:3493;1.57e-20;2!DOID:170;1.58e-15;6!DOID:299;8.12e-10;25!DOID:305;4.82e-09;106 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,8.78e-35,14;DOID:305,8.06e-25,106;DOID:1793,6.74e-23,4;DOID:4074,4.70e-21,2;DOID:4905,4.70e-21,2;DOID:3498,4.70e-21,2;DOID:3493,8.62e-21,2;DOID:4929,2.35e-20,2;DOID:0050687,9.27e-18,143;DOID:170,1.75e-15,6;DOID:299,7.74e-10,25;DOID:162,9.67e-10,235;DOID:14566,1.75e-09,239 | |||
|ontology_enrichment_uberon=UBERON:0000065!1.65e-09!53;UBERON:0000072!5.80e-09!46;UBERON:0001737!2.83e-08!9;UBERON:0004119!3.25e-08!169;UBERON:0000925!3.25e-08!169;UBERON:0006595!3.25e-08!169;UBERON:0003104!3.34e-08!238;UBERON:0009142!3.34e-08!238;UBERON:0001004!5.97e-08!72;UBERON:0000077!1.19e-07!130;UBERON:0001557!2.28e-07!19;UBERON:0008947!9.29e-07!38;UBERON:0003258!9.29e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0004913;3.81e-11;1!UBERON:0003703;3.81e-11;1!UBERON:0001174;3.81e-11;1!UBERON:0004914;3.81e-11;1!UBERON:0002394;6.48e-11;4!UBERON:0003928;6.48e-11;4!UBERON:0001264;1.53e-09;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,4.44e-11,1;UBERON:0003703,4.44e-11,1;UBERON:0001174,4.44e-11,1;UBERON:0004914,4.44e-11,1;UBERON:0001264,1.63e-09,10;UBERON:0002394,1.63e-07,6;UBERON:0003928,1.63e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0.263766978228454,0,0,0,0.602694528023977,0,0,0,0.408001382488506,0,0.572471974262113,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,1.37559020970034,0.626984899610432,0.516833518338658,0,0,0.402829317109147,0,0,0,0.81014194788176,0.357198913136319,0.22452937262617,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0.132409180813219,0,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0.236613600079688,0.168584690078102,0.723033089650446,0.110293972732394,1.08939722046203,0.474541238222193,0.404493924480493,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0.201057944823262,0.462942225792648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.425325291727159,0.716468181622786,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0.355391948742546,0.791951872933429,0.301439377059586,0,0,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0.519254429183621,0.116210378459959,0.120859449591622,0.200506470303285,1.19705285616665,0,0,0,0,0.308061348417659,0,0,0,0,0.340187410553031,0,0,0,0,0.509752546090077,0.831076008928724,0.447749509444357,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0.096670718292122,0.154048617114644,0.460511024178389,0.275673144969061,0,0.580066775656914,0.170453254832202,0,0.495854746082934,0,0.127612712494584,0.2023155617111,0,0,0,0,0.532306030317022,0,0.37064843820784,0,0.372158369359667,0,0,0.255897791311334,0,0,0,0,0,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0.405820753925408,0,0,0,0,0,0,0,0,0.379473173765715,0.349934720244983,0.48111056362756,0,1.08890984861323,0,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,0,0,0,0,0,0,4.01138275443188,0,0,0,0,0,0,2.24670877868317,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21787692703798,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,4.89698424477443,0,0,0,0,0,0,0,0,0,0,0,0,3.7176277597097,1.21390189767046,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0.554698692052555,0.867798691675654,0,2.26353937109047,0,0.171986032471617,0.0967563312890851,0,0.0821154570532092,0,0,0,0.411125773940253,0,0,0,0.320635281006135,0.213452994739353,0,0.432271251462318,0,0,2.88109595976299,0.124252535565433,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0.335434687599266,0,0,0.105600336519406,0,2.49489756515279,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0,0,0.171086837884329,0.704815022316672,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0.214821114084977,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0.245772908753719,0.422624246717254,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0.733714394086716,3.81234698296116,0,0,0,0.0752103283492573,0.20170506870352,0,0,0.49131575253029,1.18284868973636,0.0675375846183947,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0,0,0.354581522651905,0.889851215136553,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0.17071847709395,0,0,0.354996002191696,0.0852134047591577,0,0.9164274741762,0.31020638566432,0.955538938977433,0.671132590786754,1.27595303699816,1.70685094975177,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42843150884526,3.17605384544123,0.641930933513346,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305966489225945,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0.0673520530145875,0.143444410785353,0,0.651226148887796,0.106727345877715,0,1.16772762738563,0,0,0,0,0,0 | |||
|short_description=p@chr8:128306991..128307011,- | |||
}} |
Revision as of 03:34, 14 September 2013
Short description: | p@chr8:128306991..128307011, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr8:128306991..128307011, - |
Coexpression cluster: | C4726_clear_oral_giant_anaplastic_ductal_squamous_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of pancreas | 6.74e-23 | 4 |
epithelial cell | 3.85e-13 | 253 |
squamous epithelial cell | 2.51e-09 | 63 |
endodermal cell | 1.13e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 4.44e-11 | 1 |
extrahepatic bile duct | 4.44e-11 | 1 |
common bile duct | 4.44e-11 | 1 |
duodenal papilla | 4.44e-11 | 1 |
pancreas | 1.63e-09 | 10 |
bile duct | 1.63e-07 | 6 |
digestive system duct | 1.63e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.78e-35 | 14 |
carcinoma | 8.06e-25 | 106 |
pancreatic cancer | 6.74e-23 | 4 |
pancreas adenocarcinoma | 4.70e-21 | 2 |
pancreatic carcinoma | 4.70e-21 | 2 |
pancreatic ductal adenocarcinoma | 4.70e-21 | 2 |
signet ring cell adenocarcinoma | 8.62e-21 | 2 |
tubular adenocarcinoma | 2.35e-20 | 2 |
cell type cancer | 9.27e-18 | 143 |
endocrine gland cancer | 1.75e-15 | 6 |
adenocarcinoma | 7.74e-10 | 25 |
cancer | 9.67e-10 | 235 |
disease of cellular proliferation | 1.75e-09 | 239 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.