FFCP PHASE1:Mm9::chr5:104182963..104182982,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=17355|HGNC=|MCL_coexpression_id=4|UniProt=A3KMF4,Q3UP77,Q3UQD9|association_with_transcript=-198bp_to_ENSMUST00000054979,NM_133919,uc008yjt.1_5end|description=CAGE_peak_5_at_Aff1_5end|id=chr5:104182963..104182982,+|ontology_enrichment_celltype=CL:0000791!7.70e-07!9;CL:0000789!7.70e-07!9;CL:0002420!7.70e-07!9;CL:0002419!7.70e-07!9;CL:0000790!7.70e-07!9|ontology_enrichment_celltype_v019_2=CL:0000791,1.74e-07,9;CL:0000789,1.74e-07,9;CL:0002420,1.74e-07,9;CL:0002419,1.74e-07,9;CL:0000790,1.74e-07,9;CL:0000624,8.47e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!1.13e-12!29;UBERON:0002370!2.03e-10!23;UBERON:0000974!2.03e-10!23;UBERON:0004807!2.03e-10!23;UBERON:0005058!2.03e-10!23;UBERON:0003351!2.03e-10!23;UBERON:0009113!2.03e-10!23;UBERON:0003295!2.03e-10!23;UBERON:0009722!2.03e-10!23;UBERON:0005562!2.03e-10!23;UBERON:0007690!2.03e-10!23;UBERON:0006562!2.39e-10!24;UBERON:0001557!2.39e-10!24;UBERON:0001042!2.39e-10!24;UBERON:0008814!2.39e-10!24;UBERON:0009145!2.39e-10!24;UBERON:0003408!3.03e-10!24;UBERON:0002390!3.11e-10!45;UBERON:0003061!3.11e-10!45;UBERON:0002193!8.65e-10!48;UBERON:0003081!1.63e-08!88;UBERON:0000072!1.37e-07!27;UBERON:0005057!2.64e-07!51;UBERON:0002405!9.48e-07!70|ontology_enrichment_uberon_v019_2=UBERON:0004177,6.36e-15,29;UBERON:0005057,6.36e-15,29;UBERON:0007811,2.57e-13,36;UBERON:0000153,5.36e-13,43;UBERON:0002370,2.13e-12,23;UBERON:0000974,2.13e-12,23;UBERON:0004807,2.13e-12,23;UBERON:0005058,2.13e-12,23;UBERON:0003351,2.13e-12,23;UBERON:0009113,2.13e-12,23;UBERON:0003295,2.13e-12,23;UBERON:0009722,2.13e-12,23;UBERON:0005562,2.13e-12,23;UBERON:0007690,2.13e-12,23;UBERON:0006562,2.70e-12,24;UBERON:0001557,2.70e-12,24;UBERON:0001042,2.70e-12,24;UBERON:0008814,2.70e-12,24;UBERON:0009145,2.70e-12,24;UBERON:0003408,3.57e-12,24;UBERON:0002390,3.59e-12,45;UBERON:0003061,3.59e-12,45;UBERON:0002193,6.00e-12,48;UBERON:0002405,6.00e-12,48;UBERON:0000077,8.77e-12,35;UBERON:0003081,8.87e-10,87;UBERON:0000072,1.28e-09,27;UBERON:0001048,1.44e-07,134|phase1_expression=1.28119077683835,0.697950815278722,0.909998478779072,0.60492842261366,2.00358291978539,0.671517087647559,0.233612640595526,7.48915275961142,21.96304065566,18.7251621057595,5.65019295144166,3.43020283679947,10.4432445258036,5.42006494997784,3.99731714178795,5.4668322195253,9.09430441566591,3.62781490161973,2.74228867211478,3.39511721438424,0.935476191661768,0.595745707205312,0.783599367416806,1.11994695955385,0,1.72269589234506,0.430761996159075,1.07735616342945,0.380046838912748,0.756090389279792,0,1.27006134691926,3.07532393792285,0,0.866554859253824,1.49611180822643,1.42918549383658,1.67412652294763,0.7813353445238,1.0470474879476,0,1.36609096991689,0.485510353031154,0.503587271902309,0.405507724878058,0.550640256485045,1.56478268869608,0.65407546914134,0.439372365468944,0.58328969722285,0.839918529752175,0,3.52343472721246,16.6833292662609,16.4685961579807,0,0,0.515672092277442,0.606949382578793,0.528990979272033,0.633831403506179,0.338844532069132,0.889294796111139,0.449949858640699,0.988866362566974,0,0.599200221036809,0.768436610643109,1.03689612308478,1.21505344498522,1.68259969081106,0.285650984403804,0.220868540951614,0.734944795289724,0.766763768145891,0,1.10115880999389,0.638436690425939,0.46081959976873,0.131886287730194,0.365950574409639,0.52091337055676,0,0.56276261003168,0.45839474333043,0.589257170947335,0.569486723196412,0.745597783301202,1.51452386666368,0.982430281388212,1.44932244350839,0.860423876981386,1.3599426674155,0,0,0.896053774194671,1.40444420131752,0,0.779358013808606,0.35333957451034,1.12674735821344,1.28326477414318,0,0,0.649473123033642,0,0,1.02765491747154,4.14300613835475,0.593768556259299,0.520455980298408,0.913396434936424,0.922461989024234,0.60289056221049,0.705532242814229,0.251333182659351,0.494389935468748,0.578397427679647,2.65383165584962,2.26473589926373,1.54589062922275,2.90925151881133,0,1.17112318804619,0.41889341362691,0.510914110417183,2.03685711660064,4.79922184794726,2.92261522268049,0.898743836428936,1.37250180845588,0.251308704225729,0.521472960576829,1.27857728665165,1.45451631191692,1.29793010454206,1.12023300235348,1.8661045591514,0.252722758433675,1.05220927943237,2.73252930221678,0.689706313300419,1.62055916824814,1.80845781402858,2.31324097114515,2.69038812598185,3.46696380870997,2.58703370739016,0.646703978798527,2.26927296201383,1.58356011747554,1.31517439456545,0.834141747676794,2.089512999133,1.85203922767149,0.59710280045548,0.702213187313235,1.80143534980301,1.42081749697796,2.07125772535502,0.703578179943289,1.62055855314913,1.42046841351126,2.95146347621106,1.85120535464854,0.465067889500816,1.3413670069981,1.98501082024188,2.63295759861569,0.32833492815819,2.83740833410495,1.31579988682799,2.41505126820156,0.939444931322602,1.68231958851302,0.102904612379284,0.330418782983798,0.528901133327089,0.853153002140936,1.62565670302307,1.54640953586512,0.605050573870028,1.33426826306922,0.570676878337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| ||
|EntrezGene=17355 | |||
|HGNC= | |||
|MCL_coexpression_id=4 | |||
|UniProt=A3KMF4,Q3UP77,Q3UQD9 | |||
|association_with_transcript=-198bp_to_ENSMUST00000054979,NM_133919,uc008yjt.1_5end | |||
|description=CAGE_peak_5_at_Aff1_5end | |||
|id=chr5:104182963..104182982,+ | |||
|ontology_enrichment_celltype=CL:0000791!7.70e-07!9;CL:0000789!7.70e-07!9;CL:0002420!7.70e-07!9;CL:0002419!7.70e-07!9;CL:0000790!7.70e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.74e-07,9;CL:0000789,1.74e-07,9;CL:0002420,1.74e-07,9;CL:0002419,1.74e-07,9;CL:0000790,1.74e-07,9;CL:0000624,8.47e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.13e-12!29;UBERON:0002370!2.03e-10!23;UBERON:0000974!2.03e-10!23;UBERON:0004807!2.03e-10!23;UBERON:0005058!2.03e-10!23;UBERON:0003351!2.03e-10!23;UBERON:0009113!2.03e-10!23;UBERON:0003295!2.03e-10!23;UBERON:0009722!2.03e-10!23;UBERON:0005562!2.03e-10!23;UBERON:0007690!2.03e-10!23;UBERON:0006562!2.39e-10!24;UBERON:0001557!2.39e-10!24;UBERON:0001042!2.39e-10!24;UBERON:0008814!2.39e-10!24;UBERON:0009145!2.39e-10!24;UBERON:0003408!3.03e-10!24;UBERON:0002390!3.11e-10!45;UBERON:0003061!3.11e-10!45;UBERON:0002193!8.65e-10!48;UBERON:0003081!1.63e-08!88;UBERON:0000072!1.37e-07!27;UBERON:0005057!2.64e-07!51;UBERON:0002405!9.48e-07!70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,6.36e-15,29;UBERON:0005057,6.36e-15,29;UBERON:0007811,2.57e-13,36;UBERON:0000153,5.36e-13,43;UBERON:0002370,2.13e-12,23;UBERON:0000974,2.13e-12,23;UBERON:0004807,2.13e-12,23;UBERON:0005058,2.13e-12,23;UBERON:0003351,2.13e-12,23;UBERON:0009113,2.13e-12,23;UBERON:0003295,2.13e-12,23;UBERON:0009722,2.13e-12,23;UBERON:0005562,2.13e-12,23;UBERON:0007690,2.13e-12,23;UBERON:0006562,2.70e-12,24;UBERON:0001557,2.70e-12,24;UBERON:0001042,2.70e-12,24;UBERON:0008814,2.70e-12,24;UBERON:0009145,2.70e-12,24;UBERON:0003408,3.57e-12,24;UBERON:0002390,3.59e-12,45;UBERON:0003061,3.59e-12,45;UBERON:0002193,6.00e-12,48;UBERON:0002405,6.00e-12,48;UBERON:0000077,8.77e-12,35;UBERON:0003081,8.87e-10,87;UBERON:0000072,1.28e-09,27;UBERON:0001048,1.44e-07,134 | |||
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| |||
|short_description=p5@Aff1 | |||
}} |
Revision as of 05:46, 14 September 2013
Short description: | p5@Aff1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Aff1_5end |
Coexpression cluster: | MCL_coexpression_mm9:4 |
Association with transcript: | -198bp_to_ENSMUST00000054979, NM_133919, uc008yjt.1_5end |
EntrezGene: | Aff1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.74e-07 | 9 |
alpha-beta T cell | 1.74e-07 | 9 |
immature T cell | 1.74e-07 | 9 |
mature T cell | 1.74e-07 | 9 |
immature alpha-beta T cell | 1.74e-07 | 9 |
CD4-positive, alpha-beta T cell | 8.47e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 6.36e-15 | 29 |
immune organ | 6.36e-15 | 29 |
craniocervical region | 2.57e-13 | 36 |
anterior region of body | 5.36e-13 | 43 |
thymus | 2.13e-12 | 23 |
neck | 2.13e-12 | 23 |
respiratory system epithelium | 2.13e-12 | 23 |
hemolymphoid system gland | 2.13e-12 | 23 |
pharyngeal epithelium | 2.13e-12 | 23 |
thymic region | 2.13e-12 | 23 |
pharyngeal gland | 2.13e-12 | 23 |
entire pharyngeal arch endoderm | 2.13e-12 | 23 |
thymus primordium | 2.13e-12 | 23 |
early pharyngeal endoderm | 2.13e-12 | 23 |
pharynx | 2.70e-12 | 24 |
upper respiratory tract | 2.70e-12 | 24 |
chordate pharynx | 2.70e-12 | 24 |
pharyngeal arch system | 2.70e-12 | 24 |
pharyngeal region of foregut | 2.70e-12 | 24 |
gland of gut | 3.57e-12 | 24 |
hematopoietic system | 3.59e-12 | 45 |
blood island | 3.59e-12 | 45 |
hemolymphoid system | 6.00e-12 | 48 |
immune system | 6.00e-12 | 48 |
mixed endoderm/mesoderm-derived structure | 8.77e-12 | 35 |
lateral plate mesoderm | 8.87e-10 | 87 |
segment of respiratory tract | 1.28e-09 | 27 |
primordium | 1.44e-07 | 134 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.