FFCP PHASE1:Mm9::chr5:135039940..135039957,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=446|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:135039940..135039957,-|id=chr5:135039940..135039957,-|ontology_enrichment_celltype=CL:0002563!4.32e-24!9;CL:0002251!4.32e-24!9;CL:0000066!1.90e-16!25;CL:0000239!4.34e-16!6;CL:0000677!4.34e-16!6;CL:0000212!4.34e-16!6;CL:0000584!4.34e-16!6;CL:0002076!7.92e-14!15;CL:0000075!1.04e-13!7;CL:0000223!2.65e-12!20;CL:0002250!1.39e-09!3;CL:0000473!4.19e-09!3;CL:0000627!4.19e-09!3;CL:0000682!4.19e-09!3|ontology_enrichment_celltype_v019_2=CL:0002563,1.61e-21,9;CL:0002251,1.61e-21,9;CL:0002250,2.37e-13,3;CL:0002076,1.23e-12,15;CL:0000066,5.02e-12,25;CL:0000239,7.99e-11,6;CL:0000677,7.99e-11,6;CL:0000584,7.99e-11,6;CL:0000075,2.64e-09,7;CL:0000223,2.70e-09,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.51e-35!15;UBERON:0001242!1.03e-29!13;UBERON:0000060!1.03e-29!13;UBERON:0001262!1.03e-29!13;UBERON:0004786!1.03e-29!13;UBERON:0000160!1.38e-25!43;UBERON:0004923!4.02e-24!24;UBERON:0003350!4.32e-24!9;UBERON:0004808!4.32e-24!9;UBERON:0001277!4.32e-24!9;UBERON:0005409!3.82e-21!59;UBERON:0000485!1.99e-19!11;UBERON:0004119!7.04e-11!130;UBERON:0000925!7.04e-11!130;UBERON:0006595!7.04e-11!130;UBERON:0001007!4.18e-10!128;UBERON:0001555!4.18e-10!128;UBERON:0007026!4.18e-10!128;UBERON:0004921!3.52e-08!126;UBERON:0004185!3.52e-08!126;UBERON:0001962!2.23e-07!2;UBERON:0001961!2.23e-07!2;UBERON:0001744!2.23e-07!2|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.43e-38,15;UBERON:0000160,6.49e-37,31;UBERON:0001242,1.86e-30,13;UBERON:0001262,1.86e-30,13;UBERON:0004786,1.86e-30,13;UBERON:0005409,1.92e-23,47;UBERON:0004923,2.10e-23,24;UBERON:0003350,1.61e-21,9;UBERON:0004808,1.61e-21,9;UBERON:0001277,1.61e-21,9;UBERON:0000485,1.74e-17,11;UBERON:0001007,2.06e-10,116;UBERON:0001555,2.06e-10,116;UBERON:0007026,2.06e-10,116;UBERON:0004119,3.49e-10,118;UBERON:0000925,3.49e-10,118;UBERON:0006595,3.49e-10,118;UBERON:0001962,4.07e-10,2;UBERON:0001961,4.07e-10,2;UBERON:0001744,4.07e-10,2;UBERON:0002108,4.74e-10,4;UBERON:0004921,5.34e-08,114;UBERON:0002465,5.22e-07,3|phase1_expression=0,1.04692622291808,0.454999239389536,1.20985684522732,1.50268718983904,0.839396359559449,1.16806320297763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.43974237497583,3.21172993494038,0.57423196411502,2.15380998079537,1.939241094173,2.28028103347649,2.77233142735924,0,0,0,0,2.02196133825892,3.82339684324532,1.42918549383658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.15279754584056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31293148088659,10.8424732332053,0,0,0,0,0,0.190225626112559,2.84717436926707,0,0,0.397912944082302,0,2.69645822596266,2.59365659849633,2.19055400579804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,1.1659233465194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0.388844919875379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr5:135039940..135039957,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=446 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:135039940..135039957,- | |||
|id=chr5:135039940..135039957,- | |||
|ontology_enrichment_celltype=CL:0002563!4.32e-24!9;CL:0002251!4.32e-24!9;CL:0000066!1.90e-16!25;CL:0000239!4.34e-16!6;CL:0000677!4.34e-16!6;CL:0000212!4.34e-16!6;CL:0000584!4.34e-16!6;CL:0002076!7.92e-14!15;CL:0000075!1.04e-13!7;CL:0000223!2.65e-12!20;CL:0002250!1.39e-09!3;CL:0000473!4.19e-09!3;CL:0000627!4.19e-09!3;CL:0000682!4.19e-09!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.61e-21,9;CL:0002251,1.61e-21,9;CL:0002250,2.37e-13,3;CL:0002076,1.23e-12,15;CL:0000066,5.02e-12,25;CL:0000239,7.99e-11,6;CL:0000677,7.99e-11,6;CL:0000584,7.99e-11,6;CL:0000075,2.64e-09,7;CL:0000223,2.70e-09,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.51e-35!15;UBERON:0001242!1.03e-29!13;UBERON:0000060!1.03e-29!13;UBERON:0001262!1.03e-29!13;UBERON:0004786!1.03e-29!13;UBERON:0000160!1.38e-25!43;UBERON:0004923!4.02e-24!24;UBERON:0003350!4.32e-24!9;UBERON:0004808!4.32e-24!9;UBERON:0001277!4.32e-24!9;UBERON:0005409!3.82e-21!59;UBERON:0000485!1.99e-19!11;UBERON:0004119!7.04e-11!130;UBERON:0000925!7.04e-11!130;UBERON:0006595!7.04e-11!130;UBERON:0001007!4.18e-10!128;UBERON:0001555!4.18e-10!128;UBERON:0007026!4.18e-10!128;UBERON:0004921!3.52e-08!126;UBERON:0004185!3.52e-08!126;UBERON:0001962!2.23e-07!2;UBERON:0001961!2.23e-07!2;UBERON:0001744!2.23e-07!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.43e-38,15;UBERON:0000160,6.49e-37,31;UBERON:0001242,1.86e-30,13;UBERON:0001262,1.86e-30,13;UBERON:0004786,1.86e-30,13;UBERON:0005409,1.92e-23,47;UBERON:0004923,2.10e-23,24;UBERON:0003350,1.61e-21,9;UBERON:0004808,1.61e-21,9;UBERON:0001277,1.61e-21,9;UBERON:0000485,1.74e-17,11;UBERON:0001007,2.06e-10,116;UBERON:0001555,2.06e-10,116;UBERON:0007026,2.06e-10,116;UBERON:0004119,3.49e-10,118;UBERON:0000925,3.49e-10,118;UBERON:0006595,3.49e-10,118;UBERON:0001962,4.07e-10,2;UBERON:0001961,4.07e-10,2;UBERON:0001744,4.07e-10,2;UBERON:0002108,4.74e-10,4;UBERON:0004921,5.34e-08,114;UBERON:0002465,5.22e-07,3 | |||
|phase1_expression=0,1.04692622291808,0.454999239389536,1.20985684522732,1.50268718983904,0.839396359559449,1.16806320297763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.43974237497583,3.21172993494038,0.57423196411502,2.15380998079537,1.939241094173,2.28028103347649,2.77233142735924,0,0,0,0,2.02196133825892,3.82339684324532,1.42918549383658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.15279754584056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31293148088659,10.8424732332053,0,0,0,0,0,0.190225626112559,2.84717436926707,0,0,0.397912944082302,0,2.69645822596266,2.59365659849633,2.19055400579804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,1.1659233465194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0.388844919875379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr5:135039940..135039957,- | |||
}} |
Revision as of 06:36, 14 September 2013
Short description: | p@chr5:135039940..135039957, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:135039940..135039957, - |
Coexpression cluster: | MCL_coexpression_mm9:446 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.61e-21 | 9 |
epithelial cell of alimentary canal | 1.61e-21 | 9 |
intestinal crypt stem cell | 2.37e-13 | 3 |
endo-epithelial cell | 1.23e-12 | 15 |
epithelial cell | 5.02e-12 | 25 |
brush border epithelial cell | 7.99e-11 | 6 |
gut absorptive cell | 7.99e-11 | 6 |
enterocyte | 7.99e-11 | 6 |
columnar/cuboidal epithelial cell | 2.64e-09 | 7 |
endodermal cell | 2.70e-09 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.43e-38 | 15 |
intestine | 6.49e-37 | 31 |
intestinal mucosa | 1.86e-30 | 13 |
wall of intestine | 1.86e-30 | 13 |
gastrointestinal system mucosa | 1.86e-30 | 13 |
gastrointestinal system | 1.92e-23 | 47 |
organ component layer | 2.10e-23 | 24 |
epithelium of mucosa | 1.61e-21 | 9 |
gastrointestinal system epithelium | 1.61e-21 | 9 |
intestinal epithelium | 1.61e-21 | 9 |
simple columnar epithelium | 1.74e-17 | 11 |
digestive system | 2.06e-10 | 116 |
digestive tract | 2.06e-10 | 116 |
primitive gut | 2.06e-10 | 116 |
endoderm-derived structure | 3.49e-10 | 118 |
endoderm | 3.49e-10 | 118 |
presumptive endoderm | 3.49e-10 | 118 |
gut-associated lymphoid tissue | 4.07e-10 | 2 |
mucosa-associated lymphoid tissue | 4.07e-10 | 2 |
lymphoid tissue | 4.07e-10 | 2 |
small intestine | 4.74e-10 | 4 |
subdivision of digestive tract | 5.34e-08 | 114 |
lymphoid system | 5.22e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.