FFCP PHASE1:Hg19::chr1:119526488..119526507,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:119526488..119526507,- | |||
|id=chr1:119526488..119526507,- | |||
|ontology_enrichment_celltype=CL:0002620!1.77e-26!23;CL:0000057!6.65e-19!75;CL:0000055!2.54e-18!180;CL:0000188!5.99e-12!9;CL:0002551!1.37e-11!6;CL:0000153!2.19e-10!9;CL:0000447!2.19e-10!9;CL:0002570!3.56e-10!8;CL:0000327!8.63e-10!14;CL:0000219!5.24e-09!390;CL:0000667!5.72e-09!6;CL:0000058!5.72e-09!6;CL:0000138!5.72e-09!6;CL:0000134!6.16e-09!358;CL:0000048!6.82e-09!430;CL:0000499!8.75e-09!27;CL:0002540!1.28e-08!6;CL:0000723!1.70e-08!436;CL:0002320!1.97e-08!365;CL:0002559!3.21e-08!4;CL:0000034!5.45e-08!444;CL:0002092!5.92e-07!10;CL:0002573!9.34e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.16e-33;23!CL:0000188;4.42e-14;9!CL:0000138;2.29e-13;6!CL:0002540;9.57e-13;6!CL:0000153;5.57e-12;9!CL:0000447;5.57e-12;9!CL:0002092;1.33e-10;10!CL:0002573;1.59e-09;2!CL:0002580;1.59e-09;3!CL:0002551;8.81e-09;6!CL:0000594;9.52e-09;3!CL:0002570;1.46e-08;8!CL:0002320;3.64e-07;188!CL:0000327;7.22e-07;15!CL:0000057;8.67e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,1.62e-33,23;CL:0000057,6.16e-16,76;CL:0000188,4.53e-14,9;CL:0000058,2.76e-13,6;CL:0000138,2.76e-13,6;CL:0002540,9.71e-13,6;CL:0000153,5.42e-12,9;CL:0000447,5.42e-12,9;CL:0000048,7.49e-11,427;CL:0002092,1.36e-10,10;CL:0000219,1.49e-10,386;CL:0000134,1.49e-10,354;CL:0000723,1.64e-10,433;CL:0002320,4.14e-10,361;CL:0000034,4.53e-10,441;CL:0002573,1.28e-09,2;CL:0002580,1.52e-09,3;CL:0002551,8.24e-09,6;CL:0000594,8.42e-09,3;CL:0002570,1.97e-08,8;CL:0000327,7.11e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!1.27e-10!5;DOID:450!1.27e-10!5;DOID:66!1.27e-10!5;DOID:423!1.27e-10!5;DOID:0080000!1.27e-10!5;DOID:11722!1.27e-10!5 | |||
|ontology_enrichment_disease_v019=DOID:17;1.24e-15;5!DOID:450;1.24e-15;5!DOID:66;1.24e-15;5!DOID:423;1.24e-15;5!DOID:0080000;1.24e-15;5!DOID:11722;1.24e-15;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.34e-15,5;DOID:450,1.34e-15,5;DOID:66,1.34e-15,5;DOID:423,1.34e-15,5;DOID:0080000,1.34e-15,5;DOID:11722,1.34e-15,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!5.35e-22!45;UBERON:0002416!5.35e-22!45;UBERON:0002097!8.12e-20!40;UBERON:0002067!2.11e-16!9;UBERON:0004016!2.11e-16!9;UBERON:0010083!2.11e-16!9;UBERON:0003102!3.10e-11!95;UBERON:0001013!3.94e-11!14;UBERON:0002384!2.59e-09!375;UBERON:0002073!3.21e-08!4;UBERON:0005086!3.21e-08!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;2.93e-18;41!UBERON:0003102;9.18e-14;50!UBERON:0002199;1.72e-13;46!UBERON:0002416;1.72e-13;46!UBERON:0002067;3.60e-12;9!UBERON:0001013;4.24e-09;14!UBERON:0002371;1.06e-08;12!UBERON:0001134;1.74e-07;16!UBERON:0002036;1.74e-07;16!UBERON:0001474;2.88e-07;18!UBERON:0000310;5.68e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,4.19e-24,41;UBERON:0002199,2.89e-23,46;UBERON:0002416,2.89e-23,46;UBERON:0002067,3.28e-12,9;UBERON:0004016,3.28e-12,9;UBERON:0010083,3.28e-12,9;UBERON:0002384,1.30e-11,371;UBERON:0003102,7.19e-11,99;UBERON:0001013,5.39e-09,14;UBERON:0000310,5.18e-07,10 | |||
|phase1_expression=1.99846217197612,2.14100523890983,0,0,0,0,0,0.631719873426831,3.13422753839806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.06014813338393,5.0133791063589,7.09747942908036,7.15757352345989,5.35298357332899,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,0,0,0,0,0,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0.936480230490962,5.70471821544449,0.298897361103602,9.39475989150119,5.34180716414834,5.33713065468544,0,0.368502951935304,0,0,0,0,0,0.168336113954066,1.62654075833553,0,0,0,0,0,8.61070251306537,4.27114777637135,3.17897851739343,6.60200411385685,3.09157587715317,1.28820270022815,1.30281799432113,0,0,6.31084435610286,2.11714766877288,0,1.06502877754984,1.61203357164224,2.20428770003634,0,0,0,0,0,0,0,0,0,3.12899064659632,0.643240938192885,5.52539685409922,3.71494342425583,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.897048674762886,0,0.7333828582095,0,3.57656445851882,2.535908257668,0,0,4.62973273671856,0,4.79559922228979,0,0,0,2.28015329005615,0,0,0,0,0,0,0,0,2.63587341040741,1.14861935834114,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0,0,0,1.20378439891088,0,0,2.65690239414175,2.76553752812555,0.260650843404249,0,0,0,0,0,0,0,0,1.48864684691266,6.90578879796281,3.08726103876381,0,0.511707249066704,0,0,0,0.355123450626254,1.56041596426237,0,0.348631135379878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.12354806948246,1.3864375540318,1.38153307253517,1.24052915236078,2.14840489736547,1.45016693914229,1.61930592090592,0.445160178233687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571890581771475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68886108238131,0.987884678879706,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39524537815682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505492637027904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.7713867147037,0,0.327872630709804,0,0,0,0,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0.233713309847224,0.554805861502613,6.25029917407794,3.0188148210309,3.55924488638614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03018711554838,1.01024846629776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.3602641196436,0,0,0,0,0,0,0,0,0,0,1.59002175326709,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,5.33934933654034,1.3807198521202,0,0,2.62216589314576,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0.131545547125698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.37828402703092,5.62408471410441,0,0,0,0,0,0,0,0.647428837187895,0.410651227424988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88876094969289,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85997509083376,2.77305377178851,0.432626562123789,0,0,0.126698501011437,0,0,0,0,0,0,0,0,1.0661699095049,0,0,0,0,0,0,2.17716747896961,1.02669990325584,0,0.0717222053926763,0.99798106963804,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:119526488..119526507,- | |||
}} |
Revision as of 20:24, 10 January 2014
Short description: | p@chr1:119526488..119526507, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:119526488..119526507, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.62e-33 | 23 |
fibroblast | 6.16e-16 | 76 |
cell of skeletal muscle | 4.53e-14 | 9 |
chondroblast | 2.76e-13 | 6 |
chondrocyte | 2.76e-13 | 6 |
mesenchymal stem cell of the bone marrow | 9.71e-13 | 6 |
GAG secreting cell | 5.42e-12 | 9 |
carbohydrate secreting cell | 5.42e-12 | 9 |
multi fate stem cell | 7.49e-11 | 427 |
bone marrow cell | 1.36e-10 | 10 |
motile cell | 1.49e-10 | 386 |
mesenchymal cell | 1.49e-10 | 354 |
somatic stem cell | 1.64e-10 | 433 |
connective tissue cell | 4.14e-10 | 361 |
stem cell | 4.53e-10 | 441 |
Schwann cell | 1.28e-09 | 2 |
preadipocyte of the breast | 1.52e-09 | 3 |
fibroblast of dermis | 8.24e-09 | 6 |
skeletal muscle satellite cell | 8.42e-09 | 3 |
mesenchymal stem cell of adipose | 1.97e-08 | 8 |
extracellular matrix secreting cell | 7.11e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
skin of body | 4.19e-24 | 41 |
integument | 2.89e-23 | 46 |
integumental system | 2.89e-23 | 46 |
dermis | 3.28e-12 | 9 |
dermatome | 3.28e-12 | 9 |
future dermis | 3.28e-12 | 9 |
connective tissue | 1.30e-11 | 371 |
surface structure | 7.19e-11 | 99 |
adipose tissue | 5.39e-09 | 14 |
breast | 5.18e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.34e-15 | 5 |
myotonic disease | 1.34e-15 | 5 |
muscle tissue disease | 1.34e-15 | 5 |
myopathy | 1.34e-15 | 5 |
muscular disease | 1.34e-15 | 5 |
myotonic dystrophy | 1.34e-15 | 5 |