FFCP PHASE1:Hg19::chr1:156105995..156106029,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4000 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6636 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-54bp_to_ENST00000459904_5end | |||
|description=CAGE_peak_8_at_LMNA_5end | |||
|id=chr1:156105995..156106029,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.26e-18!180;CL:0000548!2.05e-17!679;CL:0000004!2.05e-17!679;CL:0000255!2.05e-17!679;CL:0000012!1.47e-16!682;CL:0000144!3.08e-16!625;CL:0002371!2.11e-15!591;CL:0000057!8.92e-14!75;CL:0000220!1.66e-10!246;CL:0002321!5.49e-10!248;CL:0000222!9.25e-10!119;CL:0000003!1.36e-08!722;CL:0000063!4.64e-08!578;CL:0000183!6.82e-08!59;CL:0000680!1.51e-07!57;CL:0000056!1.51e-07!57;CL:0000355!1.51e-07!57;CL:0002620!3.60e-07!23;CL:0000187!7.83e-07!54;CL:0000192!9.72e-07!42;CL:0000514!9.72e-07!42 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.69e-13,76;CL:0000048,1.48e-10,427;CL:0000723,3.18e-10,433;CL:0000034,2.17e-09,441;CL:0002320,7.43e-08,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!7.00e-12!448;UBERON:0004120!7.00e-12!448;UBERON:0006603!7.00e-12!448;UBERON:0000914!9.40e-12!83;UBERON:0002329!9.40e-12!83;UBERON:0003077!9.40e-12!83;UBERON:0003059!9.40e-12!83;UBERON:0007282!9.40e-12!83;UBERON:0009618!9.40e-12!83;UBERON:0007285!9.40e-12!83;UBERON:0003102!3.88e-11!95;UBERON:0002199!9.07e-10!45;UBERON:0002416!9.07e-10!45;UBERON:0004290!1.32e-09!70;UBERON:0002204!4.58e-09!167;UBERON:0001637!1.09e-08!42;UBERON:0003509!1.09e-08!42;UBERON:0004572!1.09e-08!42;UBERON:0000468!1.37e-08!659;UBERON:0000486!1.58e-08!82;UBERON:0002097!5.40e-08!40;UBERON:0002049!1.22e-07!79;UBERON:0007798!1.22e-07!79;UBERON:0005256!1.99e-07!143;UBERON:0001981!4.05e-07!60;UBERON:0007500!4.05e-07!60;UBERON:0004537!4.05e-07!60;UBERON:0006965!4.05e-07!60;UBERON:0000467!5.87e-07!625;UBERON:0004872!8.71e-07!84;UBERON:0000480!8.78e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002067;3.24e-09;9!UBERON:0003102;1.70e-08;50!UBERON:0001013;6.13e-08;14!UBERON:0002199;5.04e-07;46!UBERON:0002416;5.04e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,1.40e-10,46;UBERON:0002416,1.40e-10,46;UBERON:0002067,4.54e-09,9;UBERON:0004016,4.54e-09,9;UBERON:0010083,4.54e-09,9;UBERON:0003102,6.83e-09,99;UBERON:0007524,1.31e-08,73;UBERON:0002329,2.56e-08,71;UBERON:0003059,2.56e-08,71;UBERON:0007282,2.56e-08,71;UBERON:0004290,2.56e-08,71;UBERON:0009618,2.56e-08,71;UBERON:0001013,4.03e-08,14;UBERON:0003077,4.60e-08,72;UBERON:0007285,4.60e-08,72;UBERON:0002097,4.67e-08,41;UBERON:0007503,7.11e-08,78;UBERON:0000926,1.04e-07,315;UBERON:0004120,1.04e-07,315;UBERON:0006603,1.04e-07,315;UBERON:0000486,1.97e-07,83;UBERON:0002384,3.40e-07,371;UBERON:0001637,6.22e-07,42;UBERON:0003509,6.22e-07,42;UBERON:0004572,6.22e-07,42 | |||
|phase1_expression=1.09007027562334,1.71280419112787,0.563817616383885,1.0007329835313,1.34088328328186,4.36169262050184,5.06599756336621,1.26343974685366,1.56711376919903,0,0.697801167972428,0.873765488520689,1.31883489114227,1.8564952944007,2.65117900582333,0.672325146451775,1.20538905604795,0.730310090387373,0.975865597581014,0.492484232307152,1.02000345622126,0.313454721478088,0,0.958120975510189,0.251085279189606,0,0,0.0787107813136792,0,0,0,2.75826367343678,2.10844143144775,2.58827807116751,0,0,0,0.553995408531877,0.601633342410425,0,0.447830948479849,0.32389366601898,0,1.30858414901608,1.51150377475524,1.4555043671269,0.232429036905685,0.822335776043652,0.619412741790207,0.28769239232215,1.0246428261164,1.18241114944293,1.37898272294647,0,1.35426486594342,2.82363509313907,0.545812300115692,2.02251136000576,2.75475503133812,0.962787081228281,1.91801137739712,0.989553900560148,0.997318288108159,0.426224750532694,2.61188314765726,0.56738522469114,0.622822248995575,1.50749199154046,0.521482918420201,1.08594422352558,0.605399502633369,1.47311054395026,0.632924774881769,0,0.212604299965044,0.209658645508376,0.336985893439485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,1.57204305099666,0.205601498999509,0,0,0,0,0.111410456885174,0.883817722424512,0.886135578334485,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403213486449465,1.33720097891754,0,0,0,0.383587685530591,1.0843174571537,0,2.89693037921647,0,2.43317435151318,0.472674085820339,0.886917589850256,0.527008714158756,0.130979075497713,1.09288586487763,1.85392221392215,0.649094787309367,0.174129737299267,0.398873881556595,0,0,0,0.39752481473341,0,0.694281003215189,2.82653970962005,2.09749718104953,1.92582629358047,1.46296476575767,1.03366703667732,0,0,0.805658634218294,1.52054421143703,0.976248230192678,0.367663080345869,3.24056779152704,0.357198913136319,0.22452937262617,0.225222960966644,0,1.89853131913626,1.28241220751285,0,0,0.872188104285069,0.496971951695318,1.39293562831038,1.32409180813219,2.0078563452417,0.709336764396714,0.560677600142307,1.06748995729705,1.48000529050296,0,1.34710672069688,1.47115712802113,0.605429710579726,1.15235184896,0.70296429550139,2.18512053781224,2.85235910772225,2.39117888882882,2.3486899728753,1.29498355494505,1.26405726032024,1.02077085627447,2.57952066354713,1.03325781175765,0,4.94533858557114,0,1.43723628363248,0.505008341862199,1.50142223846357,0.277064115484183,0.877955241761676,6.74273150757843,1.65261864797256,0.907457465280168,2.15267562826634,0.640672166455702,0.211931901159562,2.70081986475962,0.206105058476878,3.60696756063881,0.37223371266318,0.675105328965065,1.94874010322397,4.79624171063818,1.28869858099219,0.80823028409406,1.77504796258307,1.20902517873168,2.03472710772585,0.773043412653187,0.545492241181669,0.286804595389004,0,0,0,0.10366105501537,0.756962552626885,0,6.25798129319264,3.85944562915731,4.14404764057442,2.78620756819187,2.16563844500876,1.65629520055781,0.842923450390509,0.723033089650446,1.43382164552112,1.08939722046203,0.474541238222193,1.07865046528132,1.37355025587742,1.53898862778556,0,0,0.4115740113314,0,0,0.982827216677626,0,0,0.245976877086227,1.02940686179115,0.768251997860379,0,1.00528972411631,0.462942225792648,0.651616610620649,1.03993478527958,0,0,0.352226082707465,0.866198686566443,0,1.14152491340759,0.790204397959275,0.858486162094873,0.246217006087397,0.702012795417713,0.445893486866185,0.93733833986777,0.503946384596579,0.850650583454319,0.806026704325635,0.581267877027924,2.68367875415648,0,0.176096868026452,5.80518723514162,3.17063897517315,2.27236380167484,0.698476837213859,0.763976851116555,3.51652341630141,3.4214489204541,1.33675740514321,2.10240140490742,1.42913216315289,0,0,0.7333828582095,0.129271715757778,3.57656445851882,3.381211010224,0.26593811658487,0,1.28603687131071,0,2.66422179016099,0.285955987316295,0.542621605391443,0,0.977208552881205,0.355391948742546,0,0.301439377059586,0,1.09970290300263,0,0,0,0.718874566474748,3.44585807502342,0,1.59259437334337,2.87666851570537,0.537182889719687,0,0.197030760201927,1.07813787429759,0.128343036279748,0,0,0,0,0.637938751653163,0,0,0,0.36807447515742,3.00102312635806,1.35632511849868,2.28767947683888,4.46072471992904,1.89242898040722,0.819989904948992,1.20378439891088,6.82222512167955,0,0,2.39679919104214,1.73767228936166,1.17480694477644,1.02943027143257,0,0.215714200818617,0,0.909382714338778,1.66435439510497,1.20956117331872,2.72918588600655,0.767309866440312,2.24528075546459,1.02511319404561,0,0.804269605718038,7.42090332224955,1.07946785661859,2.13074070375753,1.06765302817952,2.07701771673448,5.11325665223821,0,0.802025881213139,0.460404944679482,1.49258782613989,1.82091168006717,2.09799063935079,0.451199612907412,0.539107359730903,0.784349769176855,0,0.105551628892876,1.13733384070897,0.850468526382578,0.647747748306418,0,0.812839312631559,2.50844886927427,0.764628819135115,1.66215201785745,0.447749509444357,0.219259876645935,0.522870902049801,0,0.328014645699706,0.650756789328606,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| |||
|short_description=p8@LMNA | |||
}} |
Revision as of 21:23, 10 January 2014
Short description: | p8@LMNA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LMNA_5end |
Coexpression cluster: | NA |
Association with transcript: | -54bp_to_ENST00000459904_5end |
EntrezGene: | LMNA |
HGNC: | 6636 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.69e-13 | 76 |
multi fate stem cell | 1.48e-10 | 427 |
somatic stem cell | 3.18e-10 | 433 |
stem cell | 2.17e-09 | 441 |
connective tissue cell | 7.43e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
integument | 1.40e-10 | 46 |
integumental system | 1.40e-10 | 46 |
dermis | 4.54e-09 | 9 |
dermatome | 4.54e-09 | 9 |
future dermis | 4.54e-09 | 9 |
surface structure | 6.83e-09 | 99 |
dense mesenchyme tissue | 1.31e-08 | 73 |
somite | 2.56e-08 | 71 |
presomitic mesoderm | 2.56e-08 | 71 |
presumptive segmental plate | 2.56e-08 | 71 |
dermomyotome | 2.56e-08 | 71 |
trunk paraxial mesoderm | 2.56e-08 | 71 |
adipose tissue | 4.03e-08 | 14 |
paraxial mesoderm | 4.60e-08 | 72 |
presumptive paraxial mesoderm | 4.60e-08 | 72 |
skin of body | 4.67e-08 | 41 |
epithelial vesicle | 7.11e-08 | 78 |
mesoderm | 1.04e-07 | 315 |
mesoderm-derived structure | 1.04e-07 | 315 |
presumptive mesoderm | 1.04e-07 | 315 |
multilaminar epithelium | 1.97e-07 | 83 |
connective tissue | 3.40e-07 | 371 |
artery | 6.22e-07 | 42 |
arterial blood vessel | 6.22e-07 | 42 |
arterial system | 6.22e-07 | 42 |