FFCP PHASE1:Hg19::chr10:123687497..123687562,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11101 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=782 | |||
|TSSclassifier=strong | |||
|UniProt=O95260,B4E107 | |||
|association_with_transcript=0bp_to_ENST00000224652,ENST00000369040,ENST00000369043,NM_001001976,NM_007041,uc001lfp.2,uc001lfq.2,uc010qtr.1,uc010qts.1_5end | |||
|description=CAGE_peak_1_at_ATE1_5end | |||
|id=chr10:123687497..123687562,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.39e-40!115;UBERON:0001049!5.96e-16!57;UBERON:0005068!5.96e-16!57;UBERON:0006241!5.96e-16!57;UBERON:0007135!5.96e-16!57;UBERON:0003080!1.18e-14!42;UBERON:0002780!3.92e-14!41;UBERON:0001890!3.92e-14!41;UBERON:0006240!3.92e-14!41;UBERON:0000073!8.08e-14!94;UBERON:0001016!8.08e-14!94;UBERON:0005743!4.59e-13!86;UBERON:0001017!5.58e-13!82;UBERON:0002616!4.08e-12!59;UBERON:0001893!5.74e-12!34;UBERON:0000955!1.09e-11!69;UBERON:0006238!1.09e-11!69;UBERON:0002791!1.65e-11!33;UBERON:0002346!1.84e-11!90;UBERON:0003075!2.45e-11!86;UBERON:0007284!2.45e-11!86;UBERON:0002020!3.19e-11!34;UBERON:0003528!3.19e-11!34;UBERON:0001869!6.51e-11!32;UBERON:0003056!5.76e-09!61;UBERON:0002619!6.18e-09!22;UBERON:0001950!2.04e-08!20;UBERON:0000153!2.06e-08!129;UBERON:0007811!2.06e-08!129;UBERON:0000956!3.72e-08!25;UBERON:0000203!3.72e-08!25;UBERON:0000033!3.79e-07!123;UBERON:0000924!6.43e-07!173;UBERON:0006601!6.43e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;3.72e-11;114!UBERON:0002780;1.36e-10;41!UBERON:0001890;1.36e-10;41!UBERON:0001893;3.94e-10;34!UBERON:0002791;6.20e-10;32!UBERON:0001869;7.46e-10;32!UBERON:0003528;1.35e-09;34!UBERON:0002020;1.35e-09;34!UBERON:0002619;7.06e-09;22!UBERON:0000073;1.06e-08;53!UBERON:0002616;1.06e-08;53!UBERON:0001950;2.31e-08;20!UBERON:0000956;4.51e-08;25!UBERON:0000203;4.51e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.12e-39,114;UBERON:0001049,1.92e-15,56;UBERON:0005068,1.92e-15,56;UBERON:0006241,1.92e-15,56;UBERON:0007135,1.92e-15,56;UBERON:0000073,2.69e-14,53;UBERON:0002616,2.69e-14,53;UBERON:0002780,3.92e-14,41;UBERON:0001890,3.92e-14,41;UBERON:0003080,3.92e-14,41;UBERON:0006240,3.92e-14,41;UBERON:0001016,2.75e-13,89;UBERON:0001017,1.51e-12,81;UBERON:0011216,3.23e-12,223;UBERON:0001893,5.74e-12,34;UBERON:0000955,2.95e-11,68;UBERON:0006238,2.95e-11,68;UBERON:0003528,3.19e-11,34;UBERON:0002020,3.19e-11,34;UBERON:0002791,5.63e-11,32;UBERON:0001869,6.51e-11,32;UBERON:0002346,8.29e-11,86;UBERON:0003075,1.10e-10,82;UBERON:0007284,1.10e-10,82;UBERON:0002619,6.18e-09,22;UBERON:0003056,6.50e-09,61;UBERON:0001950,2.04e-08,20;UBERON:0000956,3.72e-08,25;UBERON:0000203,3.72e-08,25;UBERON:0010371,1.17e-07,104 | |||
|phase1_expression=7.63049192936338,8.56402095563933,6.48390258841467,6.00439790118782,6.25745532198203,7.85104671690332,5.06599756336621,3.79031924056099,4.17897005119742,2.21160542851358,4.88460817580699,4.58726881473362,4.74780560811216,5.69325223616215,7.29074226601415,6.05092631806598,3.01347264011988,6.57279081348636,4.87932798790507,4.18611597461079,3.4680117511523,3.76145665773705,8.87331560106276,11.4974517061223,11.4243802031271,12.3025583254202,13.3002954908912,12.9872789167571,7.08055698328027,10.747223146722,8.66970290570026,10.1136334692682,9.33738348212575,11.0926203050036,9.29606406963619,12.0843847614308,8.51441274071057,13.8498852132969,14.0381113229099,17.1438587865523,18.5849843619137,17.4902579650249,16.2272607609538,7.4153101777578,5.66813915533214,6.79235371325885,5.57829688573643,4.93401465626191,6.19412741790207,5.75384784644301,3.07392847834921,3.78371567821736,4.48169384957604,7.10033151942209,2.70852973188684,3.9530891303947,3.547779950752,5.39336362668203,5.20342617030534,2.88836124368484,6.39337125799041,5.93732340336089,3.59034583718937,5.96714650745772,5.5139755339431,3.40431134814684,3.11411124497787,4.77372463987812,3.65038042894141,4.34377689410233,2.42159801053347,4.41933163185078,4.74693581161327,8.66146673878961,9.56719349842696,8.38634582033504,11.345191745796,9.91167492753942,13.0187725224635,12.8255734683562,10.94041724595,10.0465284570549,15.839662001519,13.1073266702912,11.5636203002262,11.9484462318622,18.8186113906926,16.66782075868,15.8650769468367,14.3108063180305,7.39976859842283,11.1575065980478,8.02773779062981,15.8605594294831,12.3311883855938,11.5888997301034,19.6709770113833,17.2924735609632,14.8033079279647,19.226446969928,17.9257246648475,12.7830907548378,27.2757419771076,13.0350234555653,12.0788422064683,12.84896588585,15.1650163708409,13.4495885711959,16.3874777925447,14.3060977005198,14.3702009248641,11.5921234294021,15.1252294425302,16.0524496853828,16.7256838087963,14.5035958652885,16.4784812248826,13.7450978193052,18.9764769014627,15.2911398875566,16.9281698002669,13.3063286222772,16.8644133367106,19.0700050620083,19.9889162483753,15.6272986349051,21.3493279199472,17.338179917327,14.7092107680929,18.9719969086467,7.31420598941885,6.03630773733273,4.47518966452356,10.1202962667679,5.0133791063589,7.9665585428453,8.74814541756209,5.83961844363163,12.8567351343132,11.7516580655159,13.7900613538208,16.4378739749629,3.27865759463288,4.07862887062872,13.306443139842,11.4925626617516,9.97184703891489,20.5101936902594,16.0158575018436,29.3451426050356,10.136882775702,6.02164216574287,9.71993404501264,7.91431118693613,2.51699661725944,8.52865930014209,9.8227634272301,11.1119206442811,11.7402866686614,13.3888245105868,10.0707329277287,8.36299316290364,8.7862340717341,15.0741862941806,6.48113558305408,14.0200573406005,17.9623498100936,16.1034417091151,6.13266549863533,1.89853131913626,11.1753063797548,5.27121669744253,15.511210565933,2.18047026071267,5.4666914686485,8.737505304856,5.82600395578163,8.03142538096678,4.965357350777,8.41016400213461,6.4049397437823,5.92002116201184,14.0044965929895,12.1239604862719,12.0961808303959,4.69208025699287,8.64263886719998,5.85803579584492,9.98912245857026,13.1208518955223,11.6569970830405,13.504967344033,9.87424960645602,9.83155646915739,12.2492502752936,7.37005903870608,12.9157226469707,5.94001428641027,9.89067717114228,2.73048408581408,2.15585442544872,8.24846958374924,9.13365195065338,10.528436388399,7.46261955497424,7.66219489497549,14.5730917139399,6.35220225696118,6.63741652048789,9.1829677191984,7.41761654058466,7.50227740211006,8.34725486831355,7.9868567414145,8.37525853492154,8.77636927654584,8.57445645418548,9.84491719552046,8.65269047237614,7.43571861366535,4.9701342952326,8.16091995643886,5.93462073086707,14.1080422809207,10.6370987030426,14.0534251740612,10.3677650210156,14.3132149787204,10.1088730296481,15.0308529772287,7.0649838245176,13.5041622858057,4.69348596989448,6.43240938192885,4.14404764057442,6.96551892047969,5.77503585335668,7.45332840251016,9.10357326421749,8.91740810568883,7.94116603673236,9.36881609597346,11.3889897173326,8.22470979777003,8.24130153526453,10.7729203944989,7.38155454624648,0,4.9388881359768,4.41026134156626,21.5483559197112,22.6050259835854,26.5855458006632,15.0097453800981,18.448265781467,10.9803398591056,8.9995234035073,7.86812272803337,12.9682374411004,11.2957903093406,1.62904152655162,6.23960871167747,10.1031939417691,11.8249013074578,6.45747818297019,8.37325397014228,7.87075371380238,10.0834700684337,8.69224837755203,9.4433477830436,15.2654543774186,8.42415354501256,11.8904929830983,11.2480600784132,8.39910640994298,8.93183112627035,11.2843738605589,13.6597951101562,10.7347150166259,10.3459279958148,11.7104417237591,17.6228898209656,21.7621129659612,15.5278193114447,10.8581399239609,8.78573378784039,8.20522130470329,6.84289784090821,9.66578431411241,13.8157806608202,18.292891688357,5.94294747030412,7.41132117016576,10.340698300754,7.62703122970889,0,5.917119267892,7.1803291477915,9.36066932202295,4.37252536245642,11.3479305618623,5.32844358032199,8.14974563851441,2.71310802695722,2.46972101034231,9.77208552881205,9.59558261604874,9.50342247520115,6.02878754119172,6.97226766880235,6.59821741801577,9.72990245129524,14.0631985600995,12.6500363689819,6.23024624278115,10.3375742250703,18.5427976552934,5.64647096003559,7.80810025691457,8.2368043090352,9.52723723944982,14.7773070151445,18.759599012778,18.9947693694028,9.40150109623115,18.219579540067,11.5993321916654,9.71594338939223,14.0346525363696,11.2351053592077,8.97484377612075,14.0901274568252,7.23879801142925,6.5022167737758,8.95174578209127,11.0224556611328,8.02930449587228,8.67363282686641,9.48845461440977,3.00946099727719,2.27407504055985,5.17365356462525,5.97803038681893,6.26855173041791,9.81784843489336,1.95801157462741,3.77457766191941,15.7143699853394,12.942852049117,16.329316343927,1.5156378572313,0,2.41912234663744,5.21026396419431,6.90578879796281,6.45518217196069,7.43207065683066,8.69902323413396,6.27330292460069,1.48418066444991,12.0283561166071,6.39222211127257,11.9084376220023,8.30807086693794,8.25093687065711,17.7663390899685,5.61418116849198,13.9042293293203,9.64441364582697,6.73737321624853,6.16284750309293,3.60959690325929,11.2442392172446,3.13739907670742,2.92278449306521,11.927334064895,3.4120015221269,6.97384191633714,7.55705706357488,4.62681758070868,4.33514300070165,3.51182841698397,5.86215428003588,5.81753206250107,4.47749509444357,8.77039506583738,7.58162807972212,15.6434576320997,4.92021968549559,12.3643789972435,14.837905677272,6.9592793261941,8.16844049213821,4.01985876597321,7.15066270640173,9.64103579064957,8.60369392799886,10.3212573466812,11.6662792791858,11.7161086611851,9.45298154840808,8.84601832876794,11.7612745834219,5.16385806751077,11.2393742445465,14.6064451197481,18.8866814491985,12.5435648260882,1.85938219718914,3.77774816196768,11.1525963225696,4.92853728281742,3.19383618190213,6.95946393660058,4.26245703939016,15.3143628813931,6.69885064847401,8.22586504268687,7.43457756302917,2.04718233049067,4.2793898803392,5.40945521474092,3.13979456079692,7.55464321849922,5.21620356498504,7.53999375012393,3.841467149893,6.34041284692033,6.7401352998237,4.8763373908959,8.04254515783239,1.05650146756755,7.37099521603123,8.20151505331534,6.78048699721457,7.16774946609961,3.98063385144732,7.89211593456773,1.15755106853338,7.21484227251296,3.44947640836597,6.196469961995,9.01425928103173,10.7558514153039,6.68093478889224,4.9933947207375,6.03093808920016,8.02209014131124,7.57378253807774,3.03578539012572,4.54915136318478,12.5088746543166,12.73574323518,7.62236894029258,13.1801321087491,0.86101074534246,6.73885902670502,4.87773168890343,11.9456168107619,13.7010854492686,13.7634697285628,9.1143549947866,15.2468336292985,15.2204041041892,10.3755729790835,18.3610688660959,15.8625035258854,13.8871292465715,18.2871172500038,14.2123325268998,10.590780982166,12.2628831029978,17.002900560271,6.05819836369525,11.974762285969,11.2988168378096,11.4303734670897,12.9848776109822,13.7590617275595,14.6070194581243,14.2578705153451,5.01268954180134,6.77167111206413,8.99293220580717,7.06298975168666,12.7753871307098,9.96165499791718,6.45205605047762,5.36822658941798,6.34026738505252,6.64319524366937,12.2498716513907,19.693983831634,9.19549306818343,11.3244469119259,18.3283106614204,29.5682053844987,20.3646369187933,21.4808123496639,8.35825382081088,3.40963376167696,7.87856799634377,9.50286978664444,6.14321404198464,12.9239194209619,14.7702887231038,4.34103949589333,6.0977433463901,19.8457883640314,21.3195347428645,23.4841328201476,13.8563011319852,16.6697952478512,7.01583391128096,6.22079175323615,13.9295944278357,22.0196044850999,9.20830266408369,24.0689909754118,26.3431401581634,13.3364388173564,14.5399911914283,19.3885325158269,15.9691038400955,18.2299432759663,14.8681999993533,22.4749868384786,20.4828206913899,13.2211898152238,5.2005289988946,7.92909758455369,4.37406920074882,14.7581245693298,16.8290863304629,19.2954301800653,21.3614430843917,28.0871320225311,24.825999992098,24.5711644812449,11.6564155965319,11.4327470308455,19.1606143674455,6.15287101573807,6.9169171316418,8.61673386333812,9.12637924144868,11.4840417503491,9.98413768080299,9.59462596833542,5.10966490978682,12.558420511602,17.9508616452169,5.8654871760467,7.4503763040741,7.38414982693708,7.5901493089674,11.9202434235284,10.9718993554574,5.87638109372932,14.9834255719977,12.5505411050413,29.8578579323551,23.3527970288815,35.4397484061503,5.93042257361244,8.40234784836219,6.57858281884369,24.3992101390051,31.3005282446528,18.0383623208511,9.48764903921463,5.08728009223433,12.1390189767046,19.3346357396201,29.0377718516793,18.9765112210904,20.5356383792586,5.86261335716521,9.12456084295775,19.2749623085084,10.2607506321405,11.6155179810673,16.7261401682142,18.7842300379663,12.3420458981693,10.0664648234376,7.83939179315021,9.83769034358549,18.3463001654132,11.5230641755983,13.4491300491828,14.3985954659786,13.6311658708327,15.033297555705,15.180053790938,21.0162088925895,12.8819409167946,14.9035958777242,20.4493870937488,8.40870945759653,8.97778786817178,20.2780345002385,5.79447867788178,16.7144883898763,17.4095626172192,15.9583348011627,16.2781921726609,9.07043509627657,29.6974483617162,5.02845562472372,4.70712808405499,6.83388058163356,10.1132706465532,18.0126086612937,19.166753044879,47.2662375847798,8.16554338697919,8.67528269121738,22.0633097005081,27.9575717294254,19.382571663574,17.1723940429132,18.8859461180091,34.1452329886065,33.3230023534162,7.56629755439048,31.4539063724125,19.0655301183481,14.340359358323,17.4575178582339,22.5398932668775,12.4469798136703,16.6998234859954,17.4340359822817,9.48443575943613,9.21514225201467,9.13968743664207,5.84932118033901,11.6070293183692,18.4071156673815,17.7780384427611,21.1199295561851,16.7330136150644,9.29282961370777,19.9008946659458,14.7774701935973,33.5906803395482,34.4287824590024,8.89939881791624,5.97299561929084,1.72844298240254,2.93928624098468,13.1703210718736,11.5750454256568,9.37134119819819,8.27178268096917,19.637999312863,26.5013777824443,13.7039933743244,16.2646100143509,27.544980899377,7.04815022316672,17.9402853113727,17.7640864762623,25.6828214315261,17.3658107634183,13.2399793371623,13.8843562154221,8.29843635101236,20.1286587246705,21.3086409919295,14.7045876846462,20.6559757347177,15.0771932400225,19.4934999592737,15.9854407021572,16.9007756453775,19.4959126534624,16.1956415243804,18.0079568530012,17.98532254171,15.4975705873012,11.3736838156236,8.56396000634902,11.7632909849086,10.3033679277514,6.81128834470878,7.76124975011745,7.47882591511118,4.99325275352352,8.33373223210392,6.54076544556695,6.22867855117575,8.6959225990831,7.25908434063547,5.12942761923176,10.9412810992329,10.5135866328044,8.99606224327209,8.84998854194679,5.39118070193112,3.98762571836992,7.30443086536427,6.31081957788317,4.18885733385675,6.91680246447925,7.81949234571006,8.3780234493141,7.88857391793439,3.18476710958893,5.200360940621,4.8075398725591,5.38799182025471,13.8803388051516,7.12693372507022,4.07439023612359,10.9617602625389,7.02788369088044,4.39892701215285,11.7473618163104,4.47722102703719,4.01441881309264,10.5256343797779,5.30067437837643,3.08662461233464,9.12289179526592,8.71221163199019,7.25403717635517,6.68491903590241,19.9092148058492,10.522456677327,11.1606465863225,12.5945353577,11.138734860778,8.11050598887274,36.5569973410425,9.19942020932677,12.3762406445203,12.9161234745612,9.64777121063621,8.28476776133283,14.4075892951028,6.8428498603627,8.95260599125562,26.093604357997,5.81883984866817,14.6340915177299,7.97742890783918,23.8083910513885,14.6244201825623,13.4074780313579,10.1761392209094,17.9804778602858,5.60399523799829,7.05351887381368,6.4311550244172,20.8102689312529,17.0035891590702,20.2735001002582,26.4600109870574,17.897090431742,15.2145955421279,19.7000287670858,19.9877188362816,7.75366976158102,15.5720034819017,11.1891445098224,10.1662586212298,6.10211352747467,19.3300779296828,11.5371408827439,20.3819989826487,7.66479261073376,15.6302802246619,9.16673430684978,5.40447327783319,12.2720551560148,20.531425723992,21.0891086625739,17.5683777026006,19.2149904887538,22.425967169747,11.5134131040008,21.8332918491289,9.49704719541951,9.19889479005086,20.8923715992532,35.3097908329765,10.3184152720227,29.3684226843174,8.07191568480013,10.0253569173528,9.77481653793285,18.0799489718372,16.4431933907123,13.7104855425403,10.2332889740704,17.5824527985151,21.9961825882403,20.4598679219066,33.7868726588513,6.90968291899588,6.6885236304187,26.7322275220695,13.7471842207472,16.5062824022738,7.82362225361607,16.0342272946051,9.32472738733666,8.5359238546975,14.5164528980959,12.4765934057881,18.4597921139682,16.4461871185174,19.8991913589737,6.8732060563215,5.27350855629344,7.64431151181946,6.59947047606975,7.45941775475847,13.8986434479787,31.0765841850189,35.1106799448365,11.598144313382,21.3712836946021,17.3115202961958,9.94753875806841,14.3893309840858,12.5370151063246,13.7425645931786,12.6808788596006,22.7663766418437,19.0146817638443,5.17349025997675,38.4882865153632,32.0520104058211,16.0972943034255,22.2784800245315,19.8648191964198,13.5941691750254,17.5749926622326,18.4349559604431,10.3938802161926,10.8917902549451,11.9984256383335,6.09834386837679,39.4381649653119,16.972983485968,22.7909937210808,18.9325874631822,16.4539406262014,13.9632220908921,15.3417783749466,8.18389039966853,9.24351257262837,6.92202499398063,13.8783067318587,8.08565232531347,15.4572171233953,9.89291648497223,12.0247832369502,20.6763523953401,20.5580182219748,19.0962319509963,20.0973097617134,14.925049910258,17.6870422923841,18.3381224434844,20.7116055373454,25.6417972048944,28.8026674332781,11.885977433545,19.0941474834495,27.4879376983178,14.5870221090964,25.3252642803108,15.5583242463697,14.7747743108913,25.614847454043,7.6519072494316,15.6889198440242,17.3765054058246,16.527837187612,21.1176848163109,21.2700112878188,24.0068745206286,21.3042167739364,19.7248317719206,17.3106985843746 | |||
|short_description=p1@ATE1 | |||
}} |
Revision as of 05:20, 11 January 2014
Short description: | p1@ATE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ATE1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000224652, ENST00000369040, ENST00000369043, NM_001001976, NM_007041, uc001lfp.2, uc001lfq.2, uc010qtr.1, uc010qts.1_5end |
EntrezGene: | ATE1 |
HGNC: | 782 |
UniProt: | O95260B4E107 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.12e-39 | 114 |
neural tube | 1.92e-15 | 56 |
neural rod | 1.92e-15 | 56 |
future spinal cord | 1.92e-15 | 56 |
neural keel | 1.92e-15 | 56 |
regional part of nervous system | 2.69e-14 | 53 |
regional part of brain | 2.69e-14 | 53 |
regional part of forebrain | 3.92e-14 | 41 |
forebrain | 3.92e-14 | 41 |
anterior neural tube | 3.92e-14 | 41 |
future forebrain | 3.92e-14 | 41 |
nervous system | 2.75e-13 | 89 |
central nervous system | 1.51e-12 | 81 |
organ system subdivision | 3.23e-12 | 223 |
telencephalon | 5.74e-12 | 34 |
brain | 2.95e-11 | 68 |
future brain | 2.95e-11 | 68 |
brain grey matter | 3.19e-11 | 34 |
gray matter | 3.19e-11 | 34 |
regional part of telencephalon | 5.63e-11 | 32 |
cerebral hemisphere | 6.51e-11 | 32 |
neurectoderm | 8.29e-11 | 86 |
neural plate | 1.10e-10 | 82 |
presumptive neural plate | 1.10e-10 | 82 |
regional part of cerebral cortex | 6.18e-09 | 22 |
pre-chordal neural plate | 6.50e-09 | 61 |
neocortex | 2.04e-08 | 20 |
cerebral cortex | 3.72e-08 | 25 |
pallium | 3.72e-08 | 25 |
ecto-epithelium | 1.17e-07 | 104 |