FFCP PHASE1:Hg19::chr12:4378938..4378957,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2205 | |||
|description=CAGE_peak_at_chr12:4378938..4378957,+ | |||
|id=chr12:4378938..4378957,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.38e-29!140;CL:0000988!4.80e-28!182;CL:0000037!6.08e-28!172;CL:0000566!6.08e-28!172;CL:0002087!5.37e-27!119;CL:0002031!2.30e-25!124;CL:0002032!1.09e-24!165;CL:0000837!1.09e-24!165;CL:0000838!2.28e-23!52;CL:0000542!1.39e-22!53;CL:0000051!1.39e-22!53;CL:0000791!4.82e-15!18;CL:0000789!4.82e-15!18;CL:0002420!4.82e-15!18;CL:0002419!4.82e-15!18;CL:0000790!4.82e-15!18;CL:0000084!2.63e-14!25;CL:0000827!2.63e-14!25;CL:0002057!4.30e-12!42;CL:0000860!1.46e-10!45;CL:0000625!1.07e-09!11;CL:0000945!3.99e-08!24;CL:0000826!3.99e-08!24;CL:0000763!2.58e-07!112;CL:0000049!2.58e-07!112;CL:0000080!6.26e-07!6;CL:0000766!7.20e-07!76;CL:0002009!7.34e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.02e-23;18!CL:0000789;1.02e-23;18!CL:0002419;1.02e-23;18!CL:0000084;3.16e-23;25!CL:0000542;3.94e-16;53!CL:0000625;1.55e-15;11!CL:0002087;1.65e-10;104!CL:0000624;3.61e-08;6!CL:0000623;1.00e-07;3!CL:0000226;7.54e-07;3!CL:0000842;7.54e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,6.86e-31,52;CL:0000542,4.07e-30,53;CL:0000051,4.07e-30,53;CL:0002087,1.29e-28,115;CL:0000738,5.43e-27,136;CL:0000988,5.58e-27,177;CL:0000037,2.30e-25,168;CL:0000791,6.27e-24,18;CL:0000789,6.27e-24,18;CL:0002420,6.27e-24,18;CL:0002419,6.27e-24,18;CL:0000790,6.27e-24,18;CL:0000084,1.99e-23,25;CL:0000827,1.99e-23,25;CL:0002031,1.18e-22,120;CL:0002032,2.94e-21,161;CL:0000837,2.94e-21,161;CL:0000625,1.15e-15,11;CL:0000624,3.56e-08,6;CL:0000623,1.01e-07,3;CL:0000825,1.01e-07,3;CL:0000226,5.41e-07,3;CL:0000842,5.41e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.02e-23;18!CL:0000051;3.94e-16;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.31e-17!112;UBERON:0002390!5.21e-16!102;UBERON:0003061!5.21e-16!102;UBERON:0000178!1.60e-11!15;UBERON:0000179!1.60e-11!15;UBERON:0000463!1.60e-11!15;UBERON:0002405!3.16e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.26e-11;15!UBERON:0000179;1.26e-11;15!UBERON:0000463;1.26e-11;15!UBERON:0002390;1.39e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.01e-11,15;UBERON:0000179,1.01e-11,15;UBERON:0000463,1.01e-11,15;UBERON:0002390,6.85e-11,98;UBERON:0003061,6.85e-11,98;UBERON:0002193,7.12e-10,108;UBERON:0004177,2.56e-09,7;UBERON:0005057,2.56e-09,7;UBERON:0002370,6.42e-08,4;UBERON:0005058,6.42e-08,4;UBERON:0009113,6.42e-08,4;UBERON:0003295,6.42e-08,4;UBERON:0005562,6.42e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,1.26343974685366,0,0,0.697801167972428,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,5.27252499660864,4.67973359864691,3.85682828437028,2.75354993794233,2.30297638858328,1.85779347979291,0,0.6024118375565,0,0,0,2.05520307534393,2.21598163412751,3.20871115952227,3.03815219002193,0,0,0.257575567634187,0,0.755751887377619,0,0.232429036905685,2.87817521615278,1.23882548358041,0.575384784644301,2.0492856522328,0.47296445977717,0.689491361473237,1.93645405075148,2.70852973188684,0.188242339542605,1.09162460023138,0.224723484445085,0.306083892370903,2.24650318953266,0.639337125799041,0,0.398927315243264,0.426224750532694,0.580418477257168,0,0,1.7587406567972,2.60741459210101,1.08594422352558,0,1.10483290796269,0.632924774881769,0.211255286311942,0.425208599930087,0.419317291016752,0.673971786878971,0.300353785683013,0.32145117339416,0,0,0,3.51992488922645,0.546138611262131,0,0,0.800791974072025,0.574752439954483,0.661044872784862,1.90810750907073,0.569212969109448,1.76171156811282,2.6759125968766,1.32171328579026,1.12101712596307,1.05353633910031,1.7703879310245,2.35806457649499,3.28962398399215,8.52651126492458,0.977766799900771,0.473447805734733,1.94826728407911,6.12757512868455,2.06224135232386,1.32920336750173,2.70803863765016,7.17311390463781,7.28332346335318,3.12432018746985,7.73780049800375,5.506258628966,1.77943875794473,2.67540828089713,3.1360657141493,4.19244567980995,2.68254345521345,1.37450978193052,1.77113784413652,1.59282707162048,2.60433381542567,1.90090408889675,1.35517607169996,1.79181255616186,1.24930726552346,1.4206635122641,0.821127996921047,4.23374160771938,5.34880391567015,4.34473211648397,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0.728590576585084,0,0,0,1.32957960518865,0.476981248610684,1.71598473234038,0.74291500265913,0,0,0,0,0,0,0,0.516833518338658,0,1.00416183829401,2.01414658554573,0,0.488124115096339,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.545492241181669,2.00763216772303,0.365921118388786,0,0.116193942869518,0.518305275076852,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,1.94435734832912,0,0,0,0,0,0.144366447761074,0,0.570762456703795,0,0,0,0,0,0.93733833986777,0.335964256397719,0.283550194484773,0,0,0,0,0,0.207328115540772,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0.904318131178758,0,0.199945982364114,0,0,0,0,0,0,0,0,0,2.80212859983818,5.71389204585589,9.70324086867828,7.05886699538616,0,0,0,0.335032530668698,0.637938751653163,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68798433959754,2.80428461064202,3.41528184971022,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00253235151642,0.276242966807689,0,0,0,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0.574265537996172,0,0,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0,0.255679882248303,0.0890320356467374,0.495854746082934,0.192190067365106,0.638063562472921,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31178950409327,0,0.30982349809975,0,0.143411352204052,0,0,0,0,0,0,0,0.192444225451024,0,0,0.0941438007767792,0,0,0.443430153536676,0,0.507447609232169,0.764637207142375,1.70894156152249,0.238231775457789,0.411362273086194,1.29694662238543,0.540031437238115,2.37937552888281,0.534120355637366,0,0,0,0,0,0.159426272728822,0.199579371432817,0.383010740264733,2.75175657541048,0,0,0,0,0,1.18504244461122,0.1605880751037,0,0,0,0,0,0,0,0,0,1.89318974933188,1.99843180798692,1.4098700508785,0,0,0,1.67165076416218,0,0,0,0.614321404198464,0,0.140669416410513,0,0,0.211125408127993,0.398495976502139,1.65770349318689,0,0,2.95403533106567,0,0,0,0,0.197286811273867,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0.156980256395025,0.332423363800313,0.225595660617181,0.392125068635479,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,9.19215498909928,3.58335422944858,3.9680340812073,0.067401132980677,0,0,10.2174681960773,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,2.36598618851383,0.279282401272254,0.458320848023367,0.717873024576814,0,0,0,0.201550417460179,0,0,0,0,0,0,0.0846733320657845,0,0.136203406111576,0.160753148465019,0,0,0.674921674654501,0.77380195455795,0.0607495566580247,0,0,0.472091293214983,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0.146552233678082,0,0.258565912723101,0.13223260174269,0,0,0.213574825135389,0.157204305099666,1.24271716604159,0.992332043623902,1.7785046870815,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0.244052529803926,0,0,0,0.124192805882767,1.52183498429854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|short_description=p@chr12:4378938..4378957,+ | |||
}} |
Revision as of 11:33, 11 January 2014
Short description: | p@chr12:4378938..4378957, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:4378938..4378957, + |
Coexpression cluster: | C2205_teratocarcinoma_Natural_CD8_mycosis_cord_diffuse_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 6.86e-31 | 52 |
lymphocyte | 4.07e-30 | 53 |
common lymphoid progenitor | 4.07e-30 | 53 |
nongranular leukocyte | 1.29e-28 | 115 |
leukocyte | 5.43e-27 | 136 |
hematopoietic cell | 5.58e-27 | 177 |
hematopoietic stem cell | 2.30e-25 | 168 |
mature alpha-beta T cell | 6.27e-24 | 18 |
alpha-beta T cell | 6.27e-24 | 18 |
immature T cell | 6.27e-24 | 18 |
mature T cell | 6.27e-24 | 18 |
immature alpha-beta T cell | 6.27e-24 | 18 |
T cell | 1.99e-23 | 25 |
pro-T cell | 1.99e-23 | 25 |
hematopoietic lineage restricted progenitor cell | 1.18e-22 | 120 |
hematopoietic oligopotent progenitor cell | 2.94e-21 | 161 |
hematopoietic multipotent progenitor cell | 2.94e-21 | 161 |
CD8-positive, alpha-beta T cell | 1.15e-15 | 11 |
CD4-positive, alpha-beta T cell | 3.56e-08 | 6 |
natural killer cell | 1.01e-07 | 3 |
pro-NK cell | 1.01e-07 | 3 |
single nucleate cell | 5.41e-07 | 3 |
mononuclear cell | 5.41e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.01e-11 | 15 |
haemolymphatic fluid | 1.01e-11 | 15 |
organism substance | 1.01e-11 | 15 |
hematopoietic system | 6.85e-11 | 98 |
blood island | 6.85e-11 | 98 |
hemolymphoid system | 7.12e-10 | 108 |
hemopoietic organ | 2.56e-09 | 7 |
immune organ | 2.56e-09 | 7 |
thymus | 6.42e-08 | 4 |
hemolymphoid system gland | 6.42e-08 | 4 |
thymic region | 6.42e-08 | 4 |
pharyngeal gland | 6.42e-08 | 4 |
thymus primordium | 6.42e-08 | 4 |