FFCP PHASE1:Hg19::chr12:12510076..12510138,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=118426 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17950 | |||
|TSSclassifier=strong | |||
|UniProt=Q969J3 | |||
|association_with_transcript=21bp_to_ENST00000314565_5end | |||
|coexpression_cluster_id=C23 | |||
|description=CAGE_peak_3_at_LOH12CR1_5end | |||
|id=chr12:12510076..12510138,+ | |||
|ontology_enrichment_celltype=CL:0000542!4.78e-22!53;CL:0000051!4.78e-22!53;CL:0000838!7.58e-22!52;CL:0000037!3.23e-20!172;CL:0000566!3.23e-20!172;CL:0000988!5.72e-19!182;CL:0002032!4.60e-18!165;CL:0000837!4.60e-18!165;CL:0000738!1.34e-17!140;CL:0002087!2.60e-13!119;CL:0002031!3.77e-13!124;CL:0000084!6.46e-12!25;CL:0000827!6.46e-12!25;CL:0000791!7.15e-12!18;CL:0000789!7.15e-12!18;CL:0002420!7.15e-12!18;CL:0002419!7.15e-12!18;CL:0000790!7.15e-12!18;CL:0000945!2.29e-09!24;CL:0000826!2.29e-09!24;CL:0000625!9.72e-08!11;CL:0000236!2.83e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000542;7.99e-14;53!CL:0000084;1.19e-12;25!CL:0000791;1.73e-12;18!CL:0000789;1.73e-12;18!CL:0002419;1.73e-12;18!CL:0000945;8.37e-10;24!CL:0000625;4.24e-08;11!CL:0000236;1.45e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.15e-23,53;CL:0000051,4.15e-23,53;CL:0000838,6.74e-23,52;CL:0000037,2.08e-20,168;CL:0000988,2.25e-19,177;CL:0002032,3.60e-18,161;CL:0000837,3.60e-18,161;CL:0000738,9.89e-18,136;CL:0002087,1.77e-13,115;CL:0002031,4.19e-13,120;CL:0000084,1.88e-12,25;CL:0000827,1.88e-12,25;CL:0000791,2.10e-12,18;CL:0000789,2.10e-12,18;CL:0002420,2.10e-12,18;CL:0002419,2.10e-12,18;CL:0000790,2.10e-12,18;CL:0000945,9.02e-10,24;CL:0000826,9.02e-10,24;CL:0000625,4.65e-08,11;CL:0000236,1.43e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000051;7.99e-14;53!CL:0000790;1.73e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.29e-18!115;UBERON:0001049!2.02e-12!57;UBERON:0005068!2.02e-12!57;UBERON:0006241!2.02e-12!57;UBERON:0007135!2.02e-12!57;UBERON:0002780!2.86e-12!41;UBERON:0001890!2.86e-12!41;UBERON:0006240!2.86e-12!41;UBERON:0003080!1.12e-11!42;UBERON:0001893!1.83e-11!34;UBERON:0002020!2.71e-11!34;UBERON:0003528!2.71e-11!34;UBERON:0002791!5.07e-11!33;UBERON:0001869!1.23e-10!32;UBERON:0002619!6.35e-10!22;UBERON:0001950!1.29e-09!20;UBERON:0002616!4.83e-09!59;UBERON:0001017!5.54e-09!82;UBERON:0000956!2.89e-08!25;UBERON:0000203!2.89e-08!25;UBERON:0005743!4.14e-08!86;UBERON:0000073!5.08e-08!94;UBERON:0001016!5.08e-08!94;UBERON:0000955!5.16e-08!69;UBERON:0006238!5.16e-08!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.29e-10;22!UBERON:0001950;2.66e-10;20!UBERON:0001893;4.88e-10;34!UBERON:0001869;8.10e-10;32!UBERON:0003528;9.43e-10;34!UBERON:0002020;9.43e-10;34!UBERON:0002780;9.47e-10;41!UBERON:0001890;9.47e-10;41!UBERON:0002791;1.01e-09;32!UBERON:0000956;2.01e-08;25!UBERON:0000203;2.01e-08;25!UBERON:0000073;1.56e-07;53!UBERON:0002616;1.56e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.42e-17,114;UBERON:0001049,2.22e-13,56;UBERON:0005068,2.22e-13,56;UBERON:0006241,2.22e-13,56;UBERON:0007135,2.22e-13,56;UBERON:0000073,1.23e-12,53;UBERON:0002616,1.23e-12,53;UBERON:0002780,1.31e-12,41;UBERON:0001890,1.31e-12,41;UBERON:0003080,1.31e-12,41;UBERON:0006240,1.31e-12,41;UBERON:0001893,1.71e-11,34;UBERON:0003528,2.56e-11,34;UBERON:0002020,2.56e-11,34;UBERON:0001869,1.25e-10,32;UBERON:0002791,1.38e-10,32;UBERON:0002619,2.35e-10,22;UBERON:0001950,4.94e-10,20;UBERON:0001016,1.22e-09,89;UBERON:0001017,1.59e-09,81;UBERON:0000955,1.26e-08,68;UBERON:0006238,1.26e-08,68;UBERON:0000956,3.73e-08,25;UBERON:0000203,3.73e-08,25;UBERON:0011216,3.91e-07,223;UBERON:0003056,4.31e-07,61;UBERON:0003075,8.00e-07,82;UBERON:0007284,8.00e-07,82 | |||
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| |||
|short_description=p3@LOH12CR1 | |||
}} |
Revision as of 12:16, 11 January 2014
Short description: | p3@LOH12CR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LOH12CR1_5end |
Coexpression cluster: | C23_CD4_CD8_Natural_Peripheral_Basophils_CD19_CD14 |
Association with transcript: | 21bp_to_ENST00000314565_5end |
EntrezGene: | LOH12CR1 |
HGNC: | 17950 |
UniProt: | Q969J3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.15e-23 | 53 |
common lymphoid progenitor | 4.15e-23 | 53 |
lymphoid lineage restricted progenitor cell | 6.74e-23 | 52 |
hematopoietic stem cell | 2.08e-20 | 168 |
hematopoietic cell | 2.25e-19 | 177 |
hematopoietic oligopotent progenitor cell | 3.60e-18 | 161 |
hematopoietic multipotent progenitor cell | 3.60e-18 | 161 |
leukocyte | 9.89e-18 | 136 |
nongranular leukocyte | 1.77e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 4.19e-13 | 120 |
T cell | 1.88e-12 | 25 |
pro-T cell | 1.88e-12 | 25 |
mature alpha-beta T cell | 2.10e-12 | 18 |
alpha-beta T cell | 2.10e-12 | 18 |
immature T cell | 2.10e-12 | 18 |
mature T cell | 2.10e-12 | 18 |
immature alpha-beta T cell | 2.10e-12 | 18 |
lymphocyte of B lineage | 9.02e-10 | 24 |
pro-B cell | 9.02e-10 | 24 |
CD8-positive, alpha-beta T cell | 4.65e-08 | 11 |
B cell | 1.43e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.42e-17 | 114 |
neural tube | 2.22e-13 | 56 |
neural rod | 2.22e-13 | 56 |
future spinal cord | 2.22e-13 | 56 |
neural keel | 2.22e-13 | 56 |
regional part of nervous system | 1.23e-12 | 53 |
regional part of brain | 1.23e-12 | 53 |
regional part of forebrain | 1.31e-12 | 41 |
forebrain | 1.31e-12 | 41 |
anterior neural tube | 1.31e-12 | 41 |
future forebrain | 1.31e-12 | 41 |
telencephalon | 1.71e-11 | 34 |
brain grey matter | 2.56e-11 | 34 |
gray matter | 2.56e-11 | 34 |
cerebral hemisphere | 1.25e-10 | 32 |
regional part of telencephalon | 1.38e-10 | 32 |
regional part of cerebral cortex | 2.35e-10 | 22 |
neocortex | 4.94e-10 | 20 |
nervous system | 1.22e-09 | 89 |
central nervous system | 1.59e-09 | 81 |
brain | 1.26e-08 | 68 |
future brain | 1.26e-08 | 68 |
cerebral cortex | 3.73e-08 | 25 |
pallium | 3.73e-08 | 25 |
organ system subdivision | 3.91e-07 | 223 |
pre-chordal neural plate | 4.31e-07 | 61 |
neural plate | 8.00e-07 | 82 |
presumptive neural plate | 8.00e-07 | 82 |