FFCP PHASE1:Hg19::chr15:75628395..75628414,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54939 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26027 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000338995_5end | |||
|description=CAGE_peak_1_at_COMMD4_5end | |||
|id=chr15:75628395..75628414,+ | |||
|ontology_enrichment_celltype=CL:0000012!1.81e-22!682;CL:0000548!2.19e-22!679;CL:0000004!2.19e-22!679;CL:0000255!2.19e-22!679;CL:0000220!1.57e-17!246;CL:0002321!3.43e-17!248;CL:0000055!6.86e-17!180;CL:0000222!1.84e-16!119;CL:0000144!1.47e-15!625;CL:0000003!5.89e-14!722;CL:0002371!1.22e-12!591;CL:0000066!2.34e-11!254;CL:0000213!1.04e-09!57;CL:0000215!1.04e-09!57;CL:0000183!1.99e-09!59;CL:0000393!1.41e-08!60;CL:0000211!1.41e-08!60;CL:0002078!1.92e-08!44;CL:0000680!1.97e-07!57;CL:0000056!1.97e-07!57;CL:0000355!1.97e-07!57;CL:0000115!2.14e-07!35;CL:1000449!2.19e-07!16;CL:0000187!3.52e-07!54;CL:0000221!8.88e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:1000449;2.55e-08;15!CL:0002681;1.94e-07;12!CL:0002584;1.94e-07;12!CL:0000115;4.81e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.37e-17,250;CL:0000222,1.40e-16,121;CL:0000066,1.55e-11,253;CL:0000213,3.77e-10,58;CL:0000215,3.77e-10,58;CL:0002078,6.81e-09,45;CL:0000393,2.97e-08,61;CL:0000211,2.97e-08,61;CL:1000449,3.28e-08,15;CL:0000115,7.45e-08,36;CL:0002681,2.09e-07,12;CL:0002584,2.09e-07,12;CL:0000680,3.93e-07,58;CL:0000056,3.93e-07,58;CL:0000355,3.93e-07,58;CL:0000221,3.98e-07,72;CL:0000187,7.05e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!5.11e-10!143;UBERON:0003104!7.56e-09!238;UBERON:0009142!7.56e-09!238;UBERON:0000914!1.69e-08!83;UBERON:0002329!1.69e-08!83;UBERON:0003077!1.69e-08!83;UBERON:0003059!1.69e-08!83;UBERON:0007282!1.69e-08!83;UBERON:0009618!1.69e-08!83;UBERON:0007285!1.69e-08!83;UBERON:0000486!2.47e-08!82;UBERON:0003914!2.80e-08!118;UBERON:0000490!9.61e-08!138;UBERON:0004290!1.32e-07!70;UBERON:0004211!2.19e-07!16;UBERON:0001285!2.19e-07!16;UBERON:0007684!2.19e-07!16;UBERON:0003220!2.19e-07!16;UBERON:0004208!2.19e-07!16;UBERON:0002100!2.72e-07!216;UBERON:0006555!4.15e-07!17;UBERON:0005103!4.15e-07!17;UBERON:0000083!4.15e-07!17;UBERON:0009201!4.15e-07!17;UBERON:0004819!4.15e-07!17;UBERON:0006553!4.15e-07!17;UBERON:0003074!4.15e-07!17;UBERON:0003060!4.15e-07!17;UBERON:0002049!4.67e-07!79;UBERON:0007798!4.67e-07!79;UBERON:0000353!7.95e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0000353;1.08e-08;15!UBERON:0006555;2.55e-08;15!UBERON:0004819;2.55e-08;15!UBERON:0001285;2.55e-08;15!UBERON:0007684;2.55e-08;15!UBERON:0001225;1.94e-07;12!UBERON:0008987;1.94e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,5.22e-10,78;UBERON:0000490,8.66e-09,148;UBERON:0000353,1.14e-08,15;UBERON:0003914,1.60e-08,117;UBERON:0004211,3.28e-08,15;UBERON:0009773,3.28e-08,15;UBERON:0001231,3.28e-08,15;UBERON:0001285,3.28e-08,15;UBERON:0007684,3.28e-08,15;UBERON:0004208,3.28e-08,15;UBERON:0000486,4.50e-08,83;UBERON:0006555,7.20e-08,16;UBERON:0004819,7.20e-08,16;UBERON:0003104,7.54e-08,160;UBERON:0009142,7.54e-08,160;UBERON:0002049,2.03e-07,78;UBERON:0007798,2.03e-07,78;UBERON:0001225,2.09e-07,12;UBERON:0008987,2.09e-07,12;UBERON:0002329,2.46e-07,71;UBERON:0003059,2.46e-07,71;UBERON:0007282,2.46e-07,71;UBERON:0004290,2.46e-07,71;UBERON:0009618,2.46e-07,71;UBERON:0007524,3.63e-07,73;UBERON:0005256,4.29e-07,122;UBERON:0003077,4.96e-07,72;UBERON:0007285,4.96e-07,72 | |||
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| |||
|short_description=p1@COMMD4 | |||
}} |
Revision as of 00:36, 12 January 2014
Short description: | p1@COMMD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COMMD4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000338995_5end |
EntrezGene: | COMMD4 |
HGNC: | 26027 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.37e-17 | 250 |
mesodermal cell | 1.40e-16 | 121 |
epithelial cell | 1.55e-11 | 253 |
lining cell | 3.77e-10 | 58 |
barrier cell | 3.77e-10 | 58 |
meso-epithelial cell | 6.81e-09 | 45 |
electrically responsive cell | 2.97e-08 | 61 |
electrically active cell | 2.97e-08 | 61 |
epithelial cell of nephron | 3.28e-08 | 15 |
endothelial cell | 7.45e-08 | 36 |
kidney cortical cell | 2.09e-07 | 12 |
renal cortical epithelial cell | 2.09e-07 | 12 |
muscle precursor cell | 3.93e-07 | 58 |
myoblast | 3.93e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.93e-07 | 58 |
ectodermal cell | 3.98e-07 | 72 |
muscle cell | 7.05e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 5.22e-10 | 78 |
unilaminar epithelium | 8.66e-09 | 148 |
parenchyma | 1.14e-08 | 15 |
epithelial tube | 1.60e-08 | 117 |
nephron epithelium | 3.28e-08 | 15 |
renal tubule | 3.28e-08 | 15 |
nephron tubule | 3.28e-08 | 15 |
nephron | 3.28e-08 | 15 |
uriniferous tubule | 3.28e-08 | 15 |
nephrogenic mesenchyme | 3.28e-08 | 15 |
multilaminar epithelium | 4.50e-08 | 83 |
excretory tube | 7.20e-08 | 16 |
kidney epithelium | 7.20e-08 | 16 |
mesenchyme | 7.54e-08 | 160 |
entire embryonic mesenchyme | 7.54e-08 | 160 |
vasculature | 2.03e-07 | 78 |
vascular system | 2.03e-07 | 78 |
cortex of kidney | 2.09e-07 | 12 |
renal parenchyma | 2.09e-07 | 12 |
somite | 2.46e-07 | 71 |
presomitic mesoderm | 2.46e-07 | 71 |
presumptive segmental plate | 2.46e-07 | 71 |
dermomyotome | 2.46e-07 | 71 |
trunk paraxial mesoderm | 2.46e-07 | 71 |
dense mesenchyme tissue | 3.63e-07 | 73 |
trunk mesenchyme | 4.29e-07 | 122 |
paraxial mesoderm | 4.96e-07 | 72 |
presumptive paraxial mesoderm | 4.96e-07 | 72 |