FFCP PHASE1:Hg19::chr16:30007524..30007588,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=283899 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26905 | |||
|TSSclassifier=strong | |||
|UniProt=Q8NBZ0,Q8TEI7 | |||
|association_with_transcript=0bp_to_ENST00000380503,NM_173618,uc002dvg.1,uc002dvh.1,uc002dvi.1,uc002dvj.1,uc002dvk.1_5end | |||
|description=CAGE_peak_1_at_INO80E_5end | |||
|id=chr16:30007524..30007588,+ | |||
|ontology_enrichment_celltype=CL:0002321!1.50e-13!248;CL:0000220!1.88e-13!246;CL:0000003!4.50e-13!722;CL:0000222!3.08e-09!119;CL:0000055!8.72e-09!180;CL:0000066!6.69e-08!254;CL:0000548!9.99e-08!679;CL:0000004!9.99e-08!679;CL:0000255!9.99e-08!679;CL:0002078!2.05e-07!44;CL:0000115!2.70e-07!35;CL:0000012!2.92e-07!682;CL:1000497!5.58e-07!18;CL:0002518!5.58e-07!18;CL:1000449!6.98e-07!16;CL:0000144!8.54e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.05e-07;15!CL:1000497;1.05e-07;17!CL:0002518;1.05e-07;17!CL:0002681;6.38e-07;12!CL:0002584;6.38e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.24e-13,250;CL:0000222,2.79e-09,121;CL:0000066,4.69e-08,253;CL:0002078,8.90e-08,45;CL:1000497,9.91e-08,17;CL:0002518,9.91e-08,17;CL:1000449,1.08e-07,15;CL:0000115,1.12e-07,36;CL:0002681,6.47e-07,12;CL:0002584,6.47e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.90e-08!79;UBERON:0007798!1.90e-08!79;UBERON:0000055!4.37e-08!69;UBERON:0001981!6.95e-08!60;UBERON:0007500!6.95e-08!60;UBERON:0004537!6.95e-08!60;UBERON:0006965!6.95e-08!60;UBERON:0004535!6.19e-07!110;UBERON:0004211!6.98e-07!16;UBERON:0001285!6.98e-07!16;UBERON:0007684!6.98e-07!16;UBERON:0003220!6.98e-07!16;UBERON:0004208!6.98e-07!16;UBERON:0001637!7.67e-07!42;UBERON:0003509!7.67e-07!42;UBERON:0004572!7.67e-07!42;UBERON:0006555!9.13e-07!17;UBERON:0005103!9.13e-07!17;UBERON:0000083!9.13e-07!17;UBERON:0009201!9.13e-07!17;UBERON:0004819!9.13e-07!17;UBERON:0006553!9.13e-07!17;UBERON:0003074!9.13e-07!17;UBERON:0003060!9.13e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0000353;5.13e-08;15!UBERON:0006555;1.05e-07;15!UBERON:0004819;1.05e-07;15!UBERON:0001285;1.05e-07;15!UBERON:0007684;1.05e-07;15!UBERON:0003914;2.98e-07;74!UBERON:0001225;6.38e-07;12!UBERON:0008987;6.38e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,1.03e-08,78;UBERON:0007798,1.03e-08,78;UBERON:0000055,2.30e-08,68;UBERON:0007500,3.48e-08,59;UBERON:0001981,3.48e-08,59;UBERON:0004537,3.48e-08,59;UBERON:0006965,3.48e-08,59;UBERON:0000353,5.41e-08,15;UBERON:0004211,1.08e-07,15;UBERON:0009773,1.08e-07,15;UBERON:0001231,1.08e-07,15;UBERON:0001285,1.08e-07,15;UBERON:0007684,1.08e-07,15;UBERON:0004208,1.08e-07,15;UBERON:0006555,1.57e-07,16;UBERON:0004819,1.57e-07,16;UBERON:0004535,4.06e-07,109;UBERON:0001225,6.47e-07,12;UBERON:0008987,6.47e-07,12;UBERON:0001637,7.67e-07,42;UBERON:0003509,7.67e-07,42;UBERON:0004572,7.67e-07,42 | |||
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| |||
|short_description=p1@INO80E | |||
}} |
Revision as of 03:06, 12 January 2014
Short description: | p1@INO80E |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_INO80E_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000380503, NM_173618, uc002dvg.1, uc002dvh.1, uc002dvi.1, uc002dvj.1, uc002dvk.1_5end |
EntrezGene: | INO80E |
HGNC: | 26905 |
UniProt: | Q8NBZ0Q8TEI7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.24e-13 | 250 |
mesodermal cell | 2.79e-09 | 121 |
epithelial cell | 4.69e-08 | 253 |
meso-epithelial cell | 8.90e-08 | 45 |
kidney cell | 9.91e-08 | 17 |
kidney epithelial cell | 9.91e-08 | 17 |
epithelial cell of nephron | 1.08e-07 | 15 |
endothelial cell | 1.12e-07 | 36 |
kidney cortical cell | 6.47e-07 | 12 |
renal cortical epithelial cell | 6.47e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
vasculature | 1.03e-08 | 78 |
vascular system | 1.03e-08 | 78 |
vessel | 2.30e-08 | 68 |
epithelial tube open at both ends | 3.48e-08 | 59 |
blood vessel | 3.48e-08 | 59 |
blood vasculature | 3.48e-08 | 59 |
vascular cord | 3.48e-08 | 59 |
parenchyma | 5.41e-08 | 15 |
nephron epithelium | 1.08e-07 | 15 |
renal tubule | 1.08e-07 | 15 |
nephron tubule | 1.08e-07 | 15 |
nephron | 1.08e-07 | 15 |
uriniferous tubule | 1.08e-07 | 15 |
nephrogenic mesenchyme | 1.08e-07 | 15 |
excretory tube | 1.57e-07 | 16 |
kidney epithelium | 1.57e-07 | 16 |
cardiovascular system | 4.06e-07 | 109 |
cortex of kidney | 6.47e-07 | 12 |
renal parenchyma | 6.47e-07 | 12 |
artery | 7.67e-07 | 42 |
arterial blood vessel | 7.67e-07 | 42 |
arterial system | 7.67e-07 | 42 |