FFCP PHASE1:Hg19::chr21:47551979..47551997,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2212 | |||
|TSSclassifier=not | |||
|UniProt=Q6FHW5 | |||
|association_with_transcript=196bp_to_CR536573_5end | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_20_at_COL6A2_5end | |||
|id=chr21:47551979..47551997,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.30e-41!180;CL:0000057!7.08e-27!75;CL:0000680!1.69e-18!57;CL:0000056!1.69e-18!57;CL:0000355!1.69e-18!57;CL:0000187!8.20e-18!54;CL:0000183!3.37e-17!59;CL:0000393!7.43e-17!60;CL:0000211!7.43e-17!60;CL:0000048!1.79e-16!430;CL:0000723!2.09e-15!436;CL:0000034!2.49e-15!444;CL:0000192!1.86e-14!42;CL:0000514!1.86e-14!42;CL:0002620!2.99e-12!23;CL:0000359!1.71e-10!32;CL:0002371!3.64e-09!591;CL:0002320!1.13e-07!365;CL:0000499!1.48e-07!27;CL:0000144!3.07e-07!625;CL:0002570!5.90e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.63e-13;23!CL:0002570;4.86e-11;8!CL:0000723;2.24e-10;61!CL:0000134;4.54e-10;55!CL:0000048;3.79e-09;58!CL:0002320;1.95e-08;188!CL:0002559;3.45e-08;5!CL:0000034;3.54e-08;69!CL:0000499;3.82e-08;28!CL:0000057;3.79e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.03e-19,76;CL:0000048,8.86e-19,427;CL:0000723,4.46e-18,433;CL:0000034,3.57e-17,441;CL:0002320,1.43e-13,361;CL:0002620,2.73e-13,23;CL:0002570,4.98e-11,8;CL:0000187,7.74e-11,55;CL:0000134,2.99e-10,354;CL:0000680,6.74e-10,58;CL:0000056,6.74e-10,58;CL:0000355,6.74e-10,58;CL:0000393,7.08e-10,61;CL:0000211,7.08e-10,61;CL:0000219,2.86e-08,386;CL:0002559,3.62e-08,5;CL:0000499,4.61e-08,28;CL:0000192,7.05e-08,43;CL:0000514,7.05e-08,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!7.45e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:17;2.79e-07;5!DOID:450;2.79e-07;5!DOID:66;2.79e-07;5!DOID:423;2.79e-07;5!DOID:0080000;2.79e-07;5!DOID:11722;2.79e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.50e-07,5;DOID:450,2.50e-07,5;DOID:66,2.50e-07,5;DOID:423,2.50e-07,5;DOID:0080000,2.50e-07,5;DOID:11722,2.50e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.59e-23!83;UBERON:0002329!2.59e-23!83;UBERON:0003077!2.59e-23!83;UBERON:0003059!2.59e-23!83;UBERON:0007282!2.59e-23!83;UBERON:0009618!2.59e-23!83;UBERON:0007285!2.59e-23!83;UBERON:0004290!2.76e-22!70;UBERON:0000486!6.00e-18!82;UBERON:0001134!3.21e-17!61;UBERON:0002036!3.21e-17!61;UBERON:0003082!3.21e-17!61;UBERON:0002385!5.54e-17!63;UBERON:0001015!5.54e-17!63;UBERON:0000383!5.54e-17!63;UBERON:0005256!1.55e-16!143;UBERON:0002199!2.26e-12!45;UBERON:0002416!2.26e-12!45;UBERON:0003102!7.75e-12!95;UBERON:0002100!5.44e-11!216;UBERON:0002097!2.34e-09!40;UBERON:0000475!1.27e-08!365;UBERON:0001013!1.95e-08!14;UBERON:0003104!3.20e-08!238;UBERON:0009142!3.20e-08!238;UBERON:0002384!4.30e-08!375;UBERON:0001637!3.16e-07!42;UBERON:0003509!3.16e-07!42;UBERON:0004572!3.16e-07!42;UBERON:0002067!6.98e-07!9;UBERON:0004016!6.98e-07!9;UBERON:0010083!6.98e-07!9;UBERON:0004573!8.99e-07!33;UBERON:0004571!8.99e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;7.99e-13;14!UBERON:0002199;7.26e-12;46!UBERON:0002416;7.26e-12;46!UBERON:0003102;7.34e-10;50!UBERON:0002097;1.28e-09;41!UBERON:0004905;5.18e-09;8!UBERON:0000982;5.18e-09;8!UBERON:0004770;5.18e-09;8!UBERON:0002073;3.45e-08;5!UBERON:0002072;5.18e-08;5!UBERON:0011135;1.33e-07;5!UBERON:0002216;1.33e-07;5!UBERON:0011134;1.33e-07;5!UBERON:0002209;1.33e-07;5!UBERON:0002213;1.33e-07;5!UBERON:0007844;1.33e-07;5!UBERON:0011138;1.33e-07;5!UBERON:0001130;1.33e-07;5!UBERON:0001066;1.33e-07;5!UBERON:0001468;1.33e-07;5!UBERON:0002067;2.15e-07;9!UBERON:0002384;2.41e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.44e-18,46;UBERON:0002416,2.44e-18,46;UBERON:0007524,1.21e-14,73;UBERON:0003102,2.46e-14,99;UBERON:0002329,3.02e-14,71;UBERON:0003059,3.02e-14,71;UBERON:0007282,3.02e-14,71;UBERON:0004290,3.02e-14,71;UBERON:0009618,3.02e-14,71;UBERON:0003077,6.58e-14,72;UBERON:0007285,6.58e-14,72;UBERON:0002384,1.32e-13,371;UBERON:0002097,2.58e-13,41;UBERON:0001013,5.58e-13,14;UBERON:0000486,7.87e-13,83;UBERON:0007503,4.49e-12,78;UBERON:0003104,4.43e-11,160;UBERON:0009142,4.43e-11,160;UBERON:0005256,8.93e-10,122;UBERON:0001134,9.99e-10,62;UBERON:0002036,9.99e-10,62;UBERON:0003082,9.99e-10,62;UBERON:0004905,2.54e-09,8;UBERON:0000982,2.54e-09,8;UBERON:0004770,2.54e-09,8;UBERON:0002385,3.43e-09,64;UBERON:0001015,3.43e-09,64;UBERON:0000383,3.43e-09,64;UBERON:0002073,3.62e-08,5;UBERON:0002072,3.62e-08,5;UBERON:0005086,3.62e-08,5;UBERON:0011135,6.15e-08,5;UBERON:0002216,6.15e-08,5;UBERON:0011134,6.15e-08,5;UBERON:0002209,6.15e-08,5;UBERON:0002213,6.15e-08,5;UBERON:0005856,6.15e-08,5;UBERON:0005866,6.15e-08,5;UBERON:0005863,6.15e-08,5;UBERON:0007844,6.15e-08,5;UBERON:0011138,6.15e-08,5;UBERON:0001130,6.15e-08,5;UBERON:0001066,6.15e-08,5;UBERON:0001468,6.15e-08,5;UBERON:0002067,2.02e-07,9;UBERON:0004016,2.02e-07,9;UBERON:0010083,2.02e-07,9 | |||
|phase1_expression=0.363356758541113,2.5692062866918,0.422863212287913,1.0007329835313,1.78784437770915,2.61701557230111,2.53299878168311,1.89515962028049,3.13422753839806,0,0,0,0,1.8564952944007,3.31397375727916,2.6893005858071,3.61616716814386,3.65155045193687,5.36726078669558,0.246242116153576,2.04000691244253,1.56727360739044,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0.534880391567015,0.144824403882799,0,0.670700859703636,0.383587685530591,2.1686349143074,0.50133791063589,5.35932120155048,0.795285947051099,2.43317435151318,0.0945348171640679,0,0.263504357079378,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,1.64619665163954,0.926864265692532,4.30254931123221,0.709336764396714,1.12135520028461,0,2.71334303258876,0.311211035399766,0.538842688278752,1.14423332179421,0.605429710579726,0.576175924479999,0.468642863667593,4.68240115245481,0.570471821544449,4.18456305545043,1.52664848236894,1.61872944368132,0.98315564691574,0.61246251376468,3.4393608847295,1.85986406116378,7.12801714369232,4.94533858557114,0.910161361938026,1.43723628363248,0.336672227908132,1.62654075833553,0.554128230968366,0,0.30648779579902,0.901428353439581,0.453728732640084,2.15267562826634,3.41691822109708,2.54318281391474,1.80054657650641,2.16410311400722,1.54584324027377,0.930584281657949,2.02531598689519,0.876933046450788,1.51460264546469,1.01254888506529,2.7479829659198,3.19508633264953,1.0075209822764,1.86516651541536,0,0,0,0.121973706129595,0,0.232387885739037,0.10366105501537,0.252320850875628,0,3.12899064659632,12.8648187638577,1.38134921352481,3.71494342425583,5.77503585335668,0,0,0,0,0,0,0,0,0,0,1.40241773803446,2.057870056657,7.3504355692771,0,0,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0.616964956219941,0,0.285826432630578,0.224262168690721,0.43596006883328,0.5867062865676,0.387815147273333,3.57656445851882,4.22651376278,1.06375246633948,0,0.514414748524284,0,0.532844358032199,1.85871391755592,4.34097284313154,0,1.30294473717494,2.13235169245527,2.37585561880029,0.301439377059586,0,0.099972991182057,0,0,0,1.4377491329495,1.14861935834114,0,0.434343920002738,0.821905290201534,0.179060963239896,0,0,0,0.256686072559497,0,0,0,0,0,0,0,0,2.82190430954022,5.50187573165645,2.98391526069709,2.28767947683888,2.85486382075459,0.473107245101804,0.585707074963566,0.300946099727719,2.27407504055985,4.1389228517002,1.99267679560631,0.553107505625109,2.95404289191482,3.13281851940385,3.0882908142977,0,0,0,0,0,0,0.992431231275107,0.61384789315225,2.24528075546459,0.384417447767103,0,0.64341568457443,0,6.9394362211195,8.16783936440384,1.39616165223476,9.34657972530518,8.94819914141686,0,0,0,1.03333003348146,5.28064387219479,4.98272776845812,0.451199612907412,0.15403067420883,0,0,0,0,0,0.215915916102139,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0.309123034943167,0.183138929636687,0,0.574265537996172,1.30012049207304,0,3.57681657680851,1.69453478826109,0.921022048356777,1.24052915236078,1.07420244868274,2.17525040871343,1.02271952899321,2.67096106940212,0,0,0,0,0.929691098594572,3.1481234683064,0.6970372701606,1.54016790088044,0,0,0.74129687641568,0.143124886741991,0.744316738719335,0,1.90630193923825,0.511795582622668,0,0,2.35484592059769,1.43897966066652,0.274537029736055,0.589062011728432,0.606547444719948,0,1.26377536871694,0.975267478179181,5.36169677188826,3.16950440270266,1.63799893689583,4.66637925447252,1.13008116620243,1.10273068709225,3.3171948762061,0.438450885253763,0.578775534266688,1.31178950409327,0.405820753925408,0.6196469961995,0.845086807596724,0.860468113224309,1.96498082026242,0.7133421029625,1.06428319221179,5.69990615303693,4.61012850143863,0.75894634753143,1.39973888097993,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0.106824071127473,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0,0,0,0,0.111308705022906,0,0,1.19548792950642,0.276283915531148,0,0.102268682502155,0,1.55519793830904,0,0,0,1.28236427328014,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0.538651809526579,0.227884111694002,0,0,0,0,1.00757352742049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,2.40773294189637,0,0,0,0.485560759068186,0.394584402849391,0,0,0.31593289814244,0,0,0.664653872707185,0,0.313932918407225,0,0.284609546029793,0,0,0,0,0.873633341210151,0.171986032471617,0,0,0,0.193978032976839,0,0.677942222341597,0.274083849293502,0,0,0,0,0.426905989478705,1.19885765749278,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0.429765441419957,0,1.67569440763353,0.229160424011684,0,0.199679000498991,0,0,0,0.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| |||
|short_description=p20@COL6A2 | |||
}} |
Revision as of 14:24, 21 January 2014
Short description: | p20@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | 196bp_to_CR536573_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | Q6FHW5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.03e-19 | 76 |
multi fate stem cell | 8.86e-19 | 427 |
somatic stem cell | 4.46e-18 | 433 |
stem cell | 3.57e-17 | 441 |
connective tissue cell | 1.43e-13 | 361 |
skin fibroblast | 2.73e-13 | 23 |
mesenchymal stem cell of adipose | 4.98e-11 | 8 |
muscle cell | 7.74e-11 | 55 |
mesenchymal cell | 2.99e-10 | 354 |
muscle precursor cell | 6.74e-10 | 58 |
myoblast | 6.74e-10 | 58 |
multi-potent skeletal muscle stem cell | 6.74e-10 | 58 |
electrically responsive cell | 7.08e-10 | 61 |
electrically active cell | 7.08e-10 | 61 |
motile cell | 2.86e-08 | 386 |
hair follicle cell | 3.62e-08 | 5 |
stromal cell | 4.61e-08 | 28 |
smooth muscle cell | 7.05e-08 | 43 |
smooth muscle myoblast | 7.05e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.50e-07 | 5 |
myotonic disease | 2.50e-07 | 5 |
muscle tissue disease | 2.50e-07 | 5 |
myopathy | 2.50e-07 | 5 |
muscular disease | 2.50e-07 | 5 |
myotonic dystrophy | 2.50e-07 | 5 |