FFCP PHASE1:Hg19::chr3:3221368..3221391,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51185 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30185 | |||
|TSSclassifier=weak | |||
|UniProt=F5H3U1 | |||
|association_with_transcript=0bp_to_ENST00000478353,ENST00000491834,ENST00000498700,ENST00000546075,uc003bpq.2,uc003bpr.2,uc010hbw.2,uc011aso.1_5end | |||
|coexpression_cluster_id=C867 | |||
|description=CAGE_peak_1_at_CRBN_5end | |||
|id=chr3:3221368..3221391,- | |||
|ontology_enrichment_celltype=CL:0000037!1.66e-21!172;CL:0000566!1.66e-21!172;CL:0000738!5.39e-20!140;CL:0002032!1.06e-19!165;CL:0000837!1.06e-19!165;CL:0000988!1.54e-18!182;CL:0002031!2.13e-16!124;CL:0002087!1.41e-15!119;CL:0000791!3.98e-11!18;CL:0000789!3.98e-11!18;CL:0002420!3.98e-11!18;CL:0002419!3.98e-11!18;CL:0000790!3.98e-11!18;CL:0000763!3.32e-10!112;CL:0000049!3.32e-10!112;CL:0000838!3.51e-10!52;CL:0000542!4.18e-10!53;CL:0000051!4.18e-10!53;CL:0000766!1.02e-09!76;CL:0000084!1.44e-08!25;CL:0000827!1.44e-08!25;CL:0000860!1.65e-08!45;CL:0002057!2.21e-08!42;CL:0000625!5.29e-08!11;CL:0000839!1.21e-07!70;CL:0000557!4.40e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.05e-11;18!CL:0000789;4.05e-11;18!CL:0002419;4.05e-11;18!CL:0000084;1.59e-08;25!CL:0000625;5.33e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.34e-21,168;CL:0000738,3.73e-20,136;CL:0002032,8.60e-20,161;CL:0000837,8.60e-20,161;CL:0000988,3.73e-19,177;CL:0002031,1.52e-16,120;CL:0002087,1.00e-15,115;CL:0000791,3.98e-11,18;CL:0000789,3.98e-11,18;CL:0002420,3.98e-11,18;CL:0002419,3.98e-11,18;CL:0000790,3.98e-11,18;CL:0000763,2.88e-10,108;CL:0000049,2.88e-10,108;CL:0000838,3.51e-10,52;CL:0000542,4.18e-10,53;CL:0000051,4.18e-10,53;CL:0000766,7.09e-10,72;CL:0000084,1.44e-08,25;CL:0000827,1.44e-08,25;CL:0000860,2.21e-08,42;CL:0002057,2.21e-08,42;CL:0000625,5.29e-08,11;CL:0000839,9.42e-08,66;CL:0000557,3.61e-07,67 | |||
|ontology_enrichment_development_v019=CL:0000790;4.05e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.82e-35!115;UBERON:0001049!2.54e-18!57;UBERON:0005068!2.54e-18!57;UBERON:0006241!2.54e-18!57;UBERON:0007135!2.54e-18!57;UBERON:0003080!5.03e-16!42;UBERON:0002780!6.48e-16!41;UBERON:0001890!6.48e-16!41;UBERON:0006240!6.48e-16!41;UBERON:0002616!2.06e-13!59;UBERON:0002020!2.37e-13!34;UBERON:0003528!2.37e-13!34;UBERON:0001017!2.38e-13!82;UBERON:0000073!6.90e-13!94;UBERON:0001016!6.90e-13!94;UBERON:0001893!7.60e-13!34;UBERON:0005743!1.12e-12!86;UBERON:0002791!1.93e-12!33;UBERON:0000955!2.69e-12!69;UBERON:0006238!2.69e-12!69;UBERON:0001869!3.68e-12!32;UBERON:0002346!1.38e-10!90;UBERON:0002619!3.07e-10!22;UBERON:0003075!5.56e-10!86;UBERON:0007284!5.56e-10!86;UBERON:0002390!8.50e-10!102;UBERON:0003061!8.50e-10!102;UBERON:0001950!3.25e-09!20;UBERON:0000956!4.89e-09!25;UBERON:0000203!4.89e-09!25;UBERON:0002193!5.65e-09!112;UBERON:0003056!2.02e-07!61;UBERON:0000178!8.00e-07!15;UBERON:0000179!8.00e-07!15;UBERON:0000463!8.00e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;9.48e-12;41!UBERON:0001890;9.48e-12;41!UBERON:0003528;2.25e-11;34!UBERON:0002020;2.25e-11;34!UBERON:0002791;4.31e-11;32!UBERON:0001869;5.04e-11;32!UBERON:0001893;6.51e-11;34!UBERON:0002619;3.05e-10;22!UBERON:0000073;3.17e-10;53!UBERON:0002616;3.17e-10;53!UBERON:0007023;5.87e-10;114!UBERON:0001950;3.22e-09;20!UBERON:0000956;5.00e-09;25!UBERON:0000203;5.00e-09;25!UBERON:0000178;7.74e-07;15!UBERON:0000179;7.74e-07;15!UBERON:0000463;7.74e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.18e-34,114;UBERON:0001049,3.44e-18,56;UBERON:0005068,3.44e-18,56;UBERON:0006241,3.44e-18,56;UBERON:0007135,3.44e-18,56;UBERON:0000073,8.81e-17,53;UBERON:0002616,8.81e-17,53;UBERON:0002780,6.48e-16,41;UBERON:0001890,6.48e-16,41;UBERON:0003080,6.48e-16,41;UBERON:0006240,6.48e-16,41;UBERON:0003528,2.37e-13,34;UBERON:0002020,2.37e-13,34;UBERON:0001016,2.38e-13,89;UBERON:0001017,3.43e-13,81;UBERON:0001893,7.60e-13,34;UBERON:0002791,3.12e-12,32;UBERON:0001869,3.68e-12,32;UBERON:0000955,3.84e-12,68;UBERON:0006238,3.84e-12,68;UBERON:0002346,7.26e-11,86;UBERON:0003075,2.96e-10,82;UBERON:0007284,2.96e-10,82;UBERON:0002619,3.07e-10,22;UBERON:0002390,7.16e-10,98;UBERON:0003061,7.16e-10,98;UBERON:0001950,3.25e-09,20;UBERON:0000956,4.89e-09,25;UBERON:0000203,4.89e-09,25;UBERON:0002193,5.18e-09,108;UBERON:0003056,1.28e-07,61;UBERON:0000178,8.00e-07,15;UBERON:0000179,8.00e-07,15;UBERON:0000463,8.00e-07,15 | |||
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| |||
|short_description=p1@CRBN | |||
}} |
Revision as of 16:58, 21 January 2014
Short description: | p1@CRBN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CRBN_5end |
Coexpression cluster: | C867_CD4_CD8_Natural_CD19_Peripheral_cerebellum_Mast |
Association with transcript: | 0bp_to_ENST00000478353, ENST00000491834, ENST00000498700, ENST00000546075, uc003bpq.2, uc003bpr.2, uc010hbw.2, uc011aso.1_5end |
EntrezGene: | CRBN |
HGNC: | 30185 |
UniProt: | F5H3U1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.34e-21 | 168 |
leukocyte | 3.73e-20 | 136 |
hematopoietic oligopotent progenitor cell | 8.60e-20 | 161 |
hematopoietic multipotent progenitor cell | 8.60e-20 | 161 |
hematopoietic cell | 3.73e-19 | 177 |
hematopoietic lineage restricted progenitor cell | 1.52e-16 | 120 |
nongranular leukocyte | 1.00e-15 | 115 |
mature alpha-beta T cell | 3.98e-11 | 18 |
alpha-beta T cell | 3.98e-11 | 18 |
immature T cell | 3.98e-11 | 18 |
mature T cell | 3.98e-11 | 18 |
immature alpha-beta T cell | 3.98e-11 | 18 |
myeloid cell | 2.88e-10 | 108 |
common myeloid progenitor | 2.88e-10 | 108 |
lymphoid lineage restricted progenitor cell | 3.51e-10 | 52 |
lymphocyte | 4.18e-10 | 53 |
common lymphoid progenitor | 4.18e-10 | 53 |
myeloid leukocyte | 7.09e-10 | 72 |
T cell | 1.44e-08 | 25 |
pro-T cell | 1.44e-08 | 25 |
classical monocyte | 2.21e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.21e-08 | 42 |
CD8-positive, alpha-beta T cell | 5.29e-08 | 11 |
myeloid lineage restricted progenitor cell | 9.42e-08 | 66 |
granulocyte monocyte progenitor cell | 3.61e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.18e-34 | 114 |
neural tube | 3.44e-18 | 56 |
neural rod | 3.44e-18 | 56 |
future spinal cord | 3.44e-18 | 56 |
neural keel | 3.44e-18 | 56 |
regional part of nervous system | 8.81e-17 | 53 |
regional part of brain | 8.81e-17 | 53 |
regional part of forebrain | 6.48e-16 | 41 |
forebrain | 6.48e-16 | 41 |
anterior neural tube | 6.48e-16 | 41 |
future forebrain | 6.48e-16 | 41 |
brain grey matter | 2.37e-13 | 34 |
gray matter | 2.37e-13 | 34 |
nervous system | 2.38e-13 | 89 |
central nervous system | 3.43e-13 | 81 |
telencephalon | 7.60e-13 | 34 |
regional part of telencephalon | 3.12e-12 | 32 |
cerebral hemisphere | 3.68e-12 | 32 |
brain | 3.84e-12 | 68 |
future brain | 3.84e-12 | 68 |
neurectoderm | 7.26e-11 | 86 |
neural plate | 2.96e-10 | 82 |
presumptive neural plate | 2.96e-10 | 82 |
regional part of cerebral cortex | 3.07e-10 | 22 |
hematopoietic system | 7.16e-10 | 98 |
blood island | 7.16e-10 | 98 |
neocortex | 3.25e-09 | 20 |
cerebral cortex | 4.89e-09 | 25 |
pallium | 4.89e-09 | 25 |
hemolymphoid system | 5.18e-09 | 108 |
pre-chordal neural plate | 1.28e-07 | 61 |
blood | 8.00e-07 | 15 |
haemolymphatic fluid | 8.00e-07 | 15 |
organism substance | 8.00e-07 | 15 |