FFCP PHASE1:Hg19::chr4:109084760..109084771,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C580 | |||
|description=CAGE_peak_at_chr4:109084760..109084771,- | |||
|id=chr4:109084760..109084771,- | |||
|ontology_enrichment_celltype=CL:0000084!3.53e-31!25;CL:0000827!3.53e-31!25;CL:0000791!9.78e-31!18;CL:0000789!9.78e-31!18;CL:0002420!9.78e-31!18;CL:0002419!9.78e-31!18;CL:0000790!9.78e-31!18;CL:0000542!1.24e-18!53;CL:0000051!1.24e-18!53;CL:0000625!3.66e-18!11;CL:0000838!2.75e-17!52;CL:0000624!9.56e-17!6;CL:0002087!7.43e-10!119;CL:0000898!2.67e-09!3;CL:0000842!1.09e-08!3;CL:0000738!3.90e-08!140;CL:0000815!8.30e-07!2;CL:0000792!8.30e-07!2;CL:0002677!8.30e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000084;3.15e-14;25!CL:0000624;2.35e-10;6!CL:0000815;1.93e-08;2!CL:0000792;1.93e-08;2!CL:0002677;1.93e-08;2!CL:0000791;1.29e-07;18!CL:0000789;1.29e-07;18!CL:0002419;1.29e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,3.34e-14,25;CL:0000827,3.34e-14,25;CL:0000624,2.41e-10,6;CL:0000815,1.73e-08,2;CL:0000792,1.73e-08,2;CL:0002677,1.73e-08,2;CL:0000791,1.33e-07,18;CL:0000789,1.33e-07,18;CL:0002420,1.33e-07,18;CL:0002419,1.33e-07,18;CL:0000790,1.33e-07,18;CL:0000838,8.27e-07,52 | |||
|ontology_enrichment_development_v019=UBERON:0006965;1.93e-08;2!CL:0000790;1.29e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.76e-09!7;UBERON:0000988!1.61e-07!3;UBERON:0002370!3.36e-07!4;UBERON:0005058!3.36e-07!4;UBERON:0009113!3.36e-07!4;UBERON:0003295!3.36e-07!4;UBERON:0005562!3.36e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.59e-30;2!UBERON:0005058;5.59e-30;2!UBERON:0009113;5.59e-30;2!UBERON:0004177;1.30e-12;5!UBERON:0005057;1.30e-12;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.55e-15,4;UBERON:0005058,1.55e-15,4;UBERON:0009113,1.55e-15,4;UBERON:0003295,1.55e-15,4;UBERON:0005562,1.55e-15,4;UBERON:0003351,1.12e-10,6;UBERON:0004177,2.80e-09,7;UBERON:0005057,2.80e-09,7;UBERON:0000974,9.49e-07,10;UBERON:0003408,9.49e-07,10;UBERON:0001042,9.49e-07,10;UBERON:0009145,9.49e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590129310341499,1.17903228824749,0.822405995998037,0.167186495390678,2.93330039970231,2.8406868344084,0,0.111410456885174,0.883817722424512,0.443067789167242,0,0,0,0.657751618414705,0,0.289803085735052,1.63115219478266,2.1403266247177,3.1360657141493,0.113309342697566,0.766440987203842,1.37450978193052,0,0.318565414324097,0.651083453856419,0.950452044448374,0.301150238155546,0.511946444617674,0,0.236777252044017,0,0.403213486449465,0.267440195783507,1.30341963494519,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6541442089831,0.215714200818617,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0.238231775457789,0,0,0,0.79312517629427,0,0,0,0.185803175125719,0.432807638929335,4.0550850708596,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,9.19739683761629,0,0,0,0,0.167821586975843,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552032215008773,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0.33883824611688,0,0.150962843566674,0,0.437119121007915,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0,0,0.103432995861895,0,0,8.39655827868079,9.86987957304141,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0.406896178315738,0.665756774185513,2.41528552309231,0 | |||
|short_description=p@chr4:109084760..109084771,- | |||
}} |
Revision as of 02:40, 22 January 2014
Short description: | p@chr4:109084760..109084771, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:109084760..109084771, - |
Coexpression cluster: | C580_chronic_thymus_Hodgkin_acute_iPS_vein_Burkitt |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 3.34e-14 | 25 |
pro-T cell | 3.34e-14 | 25 |
CD4-positive, alpha-beta T cell | 2.41e-10 | 6 |
regulatory T cell | 1.73e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.73e-08 | 2 |
naive regulatory T cell | 1.73e-08 | 2 |
mature alpha-beta T cell | 1.33e-07 | 18 |
alpha-beta T cell | 1.33e-07 | 18 |
immature T cell | 1.33e-07 | 18 |
mature T cell | 1.33e-07 | 18 |
immature alpha-beta T cell | 1.33e-07 | 18 |
lymphoid lineage restricted progenitor cell | 8.27e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.55e-15 | 4 |
hemolymphoid system gland | 1.55e-15 | 4 |
thymic region | 1.55e-15 | 4 |
pharyngeal gland | 1.55e-15 | 4 |
thymus primordium | 1.55e-15 | 4 |
pharyngeal epithelium | 1.12e-10 | 6 |
hemopoietic organ | 2.80e-09 | 7 |
immune organ | 2.80e-09 | 7 |
neck | 9.49e-07 | 10 |
gland of gut | 9.49e-07 | 10 |
chordate pharynx | 9.49e-07 | 10 |
pharyngeal region of foregut | 9.49e-07 | 10 |