FFCP PHASE1:Hg19::chr7:155605098..155605105,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6469 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10848 | |||
|TSSclassifier=strong | |||
|UniProt=Q15465 | |||
|association_with_transcript=-131bp_to_ENST00000297261,NM_000193,uc003wmk.1_5end | |||
|coexpression_cluster_id=C258 | |||
|description=CAGE_peak_6_at_SHH_5end | |||
|id=chr7:155605098..155605105,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;6.98e-21;1!UBERON:0003056;7.50e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0050619;2.30e-21;1!DOID:1357;2.30e-21;1!DOID:3371;6.98e-21;1!DOID:4549;6.98e-21;1!DOID:5861;6.98e-21;1!DOID:6496;6.98e-21;1!DOID:0050615;6.14e-12;16!DOID:3905;6.93e-10;9!DOID:4556;5.73e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,2.30e-21,1;DOID:1357,2.30e-21,1;DOID:3371,7.72e-21,1;DOID:4549,7.72e-21,1;DOID:5861,7.72e-21,1;DOID:6496,7.72e-21,1;DOID:0050615,6.25e-12,16;DOID:3905,7.08e-10,9;DOID:4556,5.93e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0001264!1.26e-14!10;UBERON:0003922!1.26e-14!10;UBERON:0003923!1.26e-14!10;UBERON:0003924!1.26e-14!10;UBERON:0003921!1.26e-14!10;UBERON:0005177!4.48e-14!107;UBERON:0002075!1.76e-13!18;UBERON:0001045!3.13e-13!11;UBERON:0002114!4.39e-11!12;UBERON:0002108!1.65e-09!14;UBERON:0000466!4.79e-09!126;UBERON:0000464!2.85e-08!104;UBERON:0002100!1.08e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001264;8.51e-32;10!UBERON:0001764;2.30e-21;1!UBERON:0001825;2.30e-21;1!UBERON:0000941;6.98e-21;1!UBERON:0001785;6.98e-21;1!UBERON:0002464;6.98e-21;1!UBERON:0004904;6.98e-21;1!UBERON:0001021;6.98e-21;1!UBERON:0002075;6.76e-18;18!UBERON:0003714;3.89e-11;2!UBERON:0005162;3.89e-11;2!UBERON:0000122;3.89e-11;2!UBERON:0000949;4.47e-11;43!UBERON:0002553;3.27e-08;52!UBERON:0002418;7.50e-08;3!UBERON:0004755;7.50e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001264,6.97e-32,10;UBERON:0001764,2.30e-21,1;UBERON:0001825,2.30e-21,1;UBERON:0000941,9.43e-21,1;UBERON:0001785,9.43e-21,1;UBERON:0002464,9.43e-21,1;UBERON:0004904,9.43e-21,1;UBERON:0001021,9.43e-21,1;UBERON:0003902,9.43e-21,1;UBERON:0005425,9.43e-21,1;UBERON:0002075,6.06e-18,18;UBERON:0000949,3.55e-11,45;UBERON:0003714,4.52e-11,2;UBERON:0005162,4.52e-11,2;UBERON:0000122,4.52e-11,2;UBERON:0005177,2.00e-09,101;UBERON:0002553,2.97e-08,61;UBERON:0002418,7.76e-08,3;UBERON:0004755,7.76e-08,3;UBERON:0002323,3.09e-07,46;UBERON:0004458,8.24e-07,49 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0.728341138602278,0,0,0,0,0.150323419414493,0,1.99396161812156,1.98595173525299,3.13932918407225,2.38944859545918,0.853828638089378,0,0,0,0,0.17472666824203,0.343972064943233,0,0,0,0.0969890164884194,1.6768664071385,0,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.4743924291181,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.104909176269996,0,3.04788476865836,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0,0.342173675768659,0,0,0.78602152549833,0,0,0,0,0,0,0,0,0,5.33983927250797,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,8.470956152922,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0.160482733378337,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359300808426348,0,0,0.406896178315738,0,0,0 | |||
|short_description=p6@SHH | |||
}} |
Revision as of 20:19, 22 January 2014
Short description: | p6@SHH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SHH_5end |
Coexpression cluster: | C258_hepatoblastoma_hepatocellular_signet_colon_Intestinal_Prostate_gastric |
Association with transcript: | -131bp_to_ENST00000297261, NM_000193, uc003wmk.1_5end |
EntrezGene: | SHH |
HGNC: | 10848 |
UniProt: | Q15465 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pancreas | 6.97e-32 | 10 |
maxillary sinus | 2.30e-21 | 1 |
paranasal sinus | 2.30e-21 | 1 |
cranial nerve II | 9.43e-21 | 1 |
cranial nerve | 9.43e-21 | 1 |
nerve trunk | 9.43e-21 | 1 |
nerve connecting eye with brain | 9.43e-21 | 1 |
nerve | 9.43e-21 | 1 |
retinal neural layer | 9.43e-21 | 1 |
presumptive neural retina | 9.43e-21 | 1 |
viscus | 6.06e-18 | 18 |
endocrine system | 3.55e-11 | 45 |
neural tissue | 4.52e-11 | 2 |
multi cell component structure | 4.52e-11 | 2 |
neuron projection bundle | 4.52e-11 | 2 |
trunk region element | 2.00e-09 | 101 |
anatomical cavity | 2.97e-08 | 61 |
cartilage tissue | 7.76e-08 | 3 |
skeletal tissue | 7.76e-08 | 3 |
body cavity | 3.09e-07 | 46 |
body cavity or lining | 8.24e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 2.30e-21 | 1 |
maxillary sinus cancer | 2.30e-21 | 1 |
chondrosarcoma | 7.72e-21 | 1 |
extraosseous chondrosarcoma | 7.72e-21 | 1 |
myxoid chondrosarcoma | 7.72e-21 | 1 |
extraskeletal myxoid chondrosarcoma | 7.72e-21 | 1 |
respiratory system cancer | 6.25e-12 | 16 |
lung carcinoma | 7.08e-10 | 9 |
lung large cell carcinoma | 5.93e-08 | 3 |