Personal tools

UBERON:0004821: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004821
|alt_id=
|name=pulmonary alveolus epithelium
|namespace=
|def="the epithelial layer of the alveoli[MP]. The layer of cells covering the lining of the tiny air sacs at the end of the bronchioles[BTO]." [BTO:0003511, MP:0010898]
|xref=BTO:0003511;;FMA:63915;;MA:0001771
|is_a=UBERON:0000115;;UBERON:0000487
|synonym="alveolus epithelial tissue" EXACT [OBOL:automatic];;"alveolus epithelium" EXACT [MA:0001771];;"epithelial tissue of alveolus" EXACT [OBOL:automatic];;"epithelium of alveolus" EXACT [OBOL:automatic];;"pulmonary alveolar epithelium" EXACT [FMA:63915];;"pulmonary alveolus epithelium" EXACT [MP:0010898]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the epithelial layer of the alveoli[MP]. The layer of cells covering the lining of the tiny air sacs at the end of the bronchioles[BTO]." [BTO:0003511, MP:0010898]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004821
|is_a=UBERON:0000115 ;;UBERON:0000487
|is_obsolete=
|located_in=
|located_in=
|name=pulmonary alveolus epithelium
|namespace=
|obo_creation_date=
|part_of=UBERON:0002299;;UBERON:0004894
|part_of=UBERON:0002299;;UBERON:0004894
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="alveolus epithelial tissue" EXACT [OBOL:automatic];;"alveolus epithelium" EXACT [MA:0001771];;"epithelial tissue of alveolus" EXACT [OBOL:automatic];;"epithelium of alveolus" EXACT [OBOL:automatic];;"pulmonary alveolar epithelium" EXACT [FMA:63915];;"pulmonary alveolus epithelium" EXACT [MP:0010898]
|union_of=
|xref=BTO:0003511;;FMA:63915;;MA:0001771
}}
}}

Revision as of 11:32, 12 September 2014

Name:pulmonary alveolus epithelium
Definition:"the epithelial layer of the alveoli[MP]. The layer of cells covering the lining of the tiny air sacs at the end of the bronchioles[BTO]." [BTO:0003511, MP:0010898]
Xrefs:
links:

BTO:0003511
FMA:63915

MA:0001771
Synonyms: "alveolus epithelial tissue" EXACT [OBOL:automatic]
"alveolus epithelium" EXACT [MA:0001771]
"epithelial tissue of alveolus" EXACT [OBOL:automatic]
"epithelium of alveolus" EXACT [OBOL:automatic]
"pulmonary alveolar epithelium" EXACT [FMA:63915]
"pulmonary alveolus epithelium" EXACT [MP:0010898]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000115(lung epithelium),UBERON:0000487(simple squamous epithelium)
part_of:UBERON:0002299(alveolus of lung),UBERON:0004894(alveolar wall)



Children

derives from:FF:0102060 (bronchioalveolar carcinoma cell sample)
part of:CL:0000322 (pneumocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004821 (pulmonary alveolus epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.39e-66FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_cb14ad40d5e2d830ba27818ee2fc5b35p14@DNMBP
2.39e-66FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_cb14ad40d5e2d830ba27818ee2fc5b35p@chr3:87647430..87647437, -
2.39e-66FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_cb14ad40d5e2d830ba27818ee2fc5b35p12@CLEC16A
2.39e-66FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_cb14ad40d5e2d830ba27818ee2fc5b35p9@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_cb14ad40d5e2d830ba27818ee2fc5b35p16@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_cb14ad40d5e2d830ba27818ee2fc5b35p13@DNMBP
2.39e-66FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_cb14ad40d5e2d830ba27818ee2fc5b35p1@ENST00000430271
2.39e-66FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_cb14ad40d5e2d830ba27818ee2fc5b35p1@ENST00000418699, p1@ENST00000432330
2.39e-66FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_cb14ad40d5e2d830ba27818ee2fc5b35p@chr14:36536932..36536937, -
2.39e-66FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_cb14ad40d5e2d830ba27818ee2fc5b35p@chr3:87647430..87647437, -
2.39e-66FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_cb14ad40d5e2d830ba27818ee2fc5b35p13@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_cb14ad40d5e2d830ba27818ee2fc5b35p1@ENST00000430271
2.39e-66FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_cb14ad40d5e2d830ba27818ee2fc5b35p9@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_cb14ad40d5e2d830ba27818ee2fc5b35p12@CLEC16A
2.39e-66FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_cb14ad40d5e2d830ba27818ee2fc5b35p14@DNMBP
2.39e-66FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_cb14ad40d5e2d830ba27818ee2fc5b35p1@SSX5
2.39e-66FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_cb14ad40d5e2d830ba27818ee2fc5b35p12@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_cb14ad40d5e2d830ba27818ee2fc5b35p13@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_cb14ad40d5e2d830ba27818ee2fc5b35p@chr17:63511856..63511858, -
2.39e-66FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_cb14ad40d5e2d830ba27818ee2fc5b35p@chr17:13574618..13574636, -
2.39e-66FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_cb14ad40d5e2d830ba27818ee2fc5b35p@chr17:63511856..63511858, -
2.39e-66FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_cb14ad40d5e2d830ba27818ee2fc5b35p13@DNMBP
2.39e-66FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_cb14ad40d5e2d830ba27818ee2fc5b35p16@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_cb14ad40d5e2d830ba27818ee2fc5b35p@chr17:13574618..13574636, -
2.39e-66FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_cb14ad40d5e2d830ba27818ee2fc5b35p@chr14:36536932..36536937, -
2.39e-66FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_cb14ad40d5e2d830ba27818ee2fc5b35p1@SSX5
2.39e-66FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_cb14ad40d5e2d830ba27818ee2fc5b35p1@ENST00000418699, p1@ENST00000432330
2.39e-66FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_cb14ad40d5e2d830ba27818ee2fc5b35p12@CPXM1
1.53e-44FFCP PHASE1:Hg19::chr2:191696381..191696384,-#_8680a7fd5a5a3746947ba135da3e4d84p@chr2:191696381..191696384, -
1.53e-44FFCP PHASE2:Hg19::chr2:191696381..191696384,-#_8680a7fd5a5a3746947ba135da3e4d84p@chr2:191696381..191696384, -
4.27e-34FFCP PHASE2:Hg19::chr10:101691199..101691208,-#_462031bf5fbe41c7d8a09765460155f6p11@DNMBP
4.27e-34FFCP PHASE1:Hg19::chr11:104005546..104005596,-#_462031bf5fbe41c7d8a09765460155f6p@chr11:104005546..104005596, -
4.27e-34FFCP PHASE1:Hg19::chr8:122157279..122157284,-#_462031bf5fbe41c7d8a09765460155f6p@chr8:122157279..122157284, -
4.27e-34FFCP PHASE1:Hg19::chr4:169956294..169956301,-#_462031bf5fbe41c7d8a09765460155f6p@chr4:169956294..169956301, -
4.27e-34FFCP PHASE1:Hg19::chr10:101691101..101691115,-#_462031bf5fbe41c7d8a09765460155f6p7@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr9:140350189..140350212,-#_462031bf5fbe41c7d8a09765460155f6p30@NELF
4.27e-34FFCP PHASE1:Hg19::chr11:41809203..41809208,-#_462031bf5fbe41c7d8a09765460155f6p@chr11:41809203..41809208, -
4.27e-34FFCP PHASE2:Hg19::chr8:122157279..122157284,-#_462031bf5fbe41c7d8a09765460155f6p@chr8:122157279..122157284, -
4.27e-34FFCP PHASE1:Hg19::chr11:106266838..106266843,+#_462031bf5fbe41c7d8a09765460155f6p@chr11:106266838..106266843, +
4.27e-34FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_462031bf5fbe41c7d8a09765460155f6p3@FMR1NB
4.27e-34FFCP PHASE2:Hg19::chr4:169956294..169956301,-#_462031bf5fbe41c7d8a09765460155f6p@chr4:169956294..169956301, -
4.27e-34FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_462031bf5fbe41c7d8a09765460155f6p30@PDP1
4.27e-34FFCP PHASE2:Hg19::chr11:104005546..104005596,-#_462031bf5fbe41c7d8a09765460155f6p@chr11:104005546..104005596, -
4.27e-34FFCP PHASE2:Hg19::chr10:101691101..101691115,-#_462031bf5fbe41c7d8a09765460155f6p7@DNMBP
4.27e-34FFCP PHASE1:Hg19::chr10:101691199..101691208,-#_462031bf5fbe41c7d8a09765460155f6p11@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_462031bf5fbe41c7d8a09765460155f6p30@PDP1
4.27e-34FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_462031bf5fbe41c7d8a09765460155f6p3@FMR1NB
4.27e-34FFCP PHASE1:Hg19::chr9:103785643..103785646,-#_462031bf5fbe41c7d8a09765460155f6p@chr9:103785643..103785646, -
4.27e-34FFCP PHASE2:Hg19::chr11:41809203..41809208,-#_462031bf5fbe41c7d8a09765460155f6p@chr11:41809203..41809208, -
4.27e-34FFCP PHASE2:Hg19::chr11:106266838..106266843,+#_462031bf5fbe41c7d8a09765460155f6p@chr11:106266838..106266843, +
4.27e-34FFCP PHASE1:Hg19::chr9:140350189..140350212,-#_462031bf5fbe41c7d8a09765460155f6p30@NELF
4.27e-34FFCP PHASE2:Hg19::chr9:103785643..103785646,-#_462031bf5fbe41c7d8a09765460155f6p@chr9:103785643..103785646, -
5.96e-34FFCP PHASE1:Hg19::chr17:63533845..63533851,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr17:63533845..63533851, -
5.96e-34FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:45399294..45399301, +
5.96e-34FFCP PHASE2:Hg19::chr9:140349915..140349924,-#_0bcc5e51b0fea80a33c7281fa81290dap34@NELF
5.96e-34FFCP PHASE2:Hg19::chr1:93054640..93054674,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr1:93054640..93054674, -
5.96e-34FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:45399533..45399540, +
5.96e-34FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:45405332..45405343, +
5.96e-34FFCP PHASE2:Hg19::chr1:119837700..119837705,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr1:119837700..119837705, +
5.96e-34FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr3:139035972..139036016, -
5.96e-34FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:45399245..45399258, +
5.96e-34FFCP PHASE1:Hg19::chr20:2795718..2795731,+#_0bcc5e51b0fea80a33c7281fa81290dap5@C20orf141
5.96e-34FFCP PHASE2:Hg19::chr2:118846114..118846125,+#_0bcc5e51b0fea80a33c7281fa81290dap6@INSIG2
5.96e-34FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:45405393..45405412, +
5.96e-34FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr3:139035972..139036016, -
5.96e-34FFCP PHASE1:Hg19::chr6:46985426..46985427,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:46985426..46985427, -
5.96e-34FFCP PHASE1:Hg19::chr4:171012844..171012850,-#_0bcc5e51b0fea80a33c7281fa81290dap12@AADAT
5.96e-34FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:45399263..45399274, +
5.96e-34FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:45399533..45399540, +
5.96e-34FFCP PHASE1:Hg19::chr6:169691363..169691375,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:169691363..169691375, -
5.96e-34FFCP PHASE2:Hg19::chr15:55806847..55806854,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr15:55806847..55806854, -
5.96e-34FFCP PHASE1:Hg19::chr9:140349856..140349859,-#_0bcc5e51b0fea80a33c7281fa81290dap36@NELF
5.96e-34FFCP PHASE2:Hg19::chr12:65386452..65386492,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr12:65386452..65386492, -
5.96e-34FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:45399245..45399258, +
5.96e-34FFCP PHASE1:Hg19::chr6:141743015..141743025,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:141743015..141743025, +
5.96e-34FFCP PHASE2:Hg19::chr20:2795718..2795731,+#_0bcc5e51b0fea80a33c7281fa81290dap5@C20orf141
5.96e-34FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:45399294..45399301, +
5.96e-34FFCP PHASE1:Hg19::chr9:140349915..140349924,-#_0bcc5e51b0fea80a33c7281fa81290dap34@NELF
5.96e-34FFCP PHASE1:Hg19::chr1:93054640..93054674,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr1:93054640..93054674, -
5.96e-34FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:45405332..45405343, +
5.96e-34FFCP PHASE2:Hg19::chr6:46985426..46985427,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:46985426..46985427, -
5.96e-34FFCP PHASE2:Hg19::chr4:171012844..171012850,-#_0bcc5e51b0fea80a33c7281fa81290dap12@AADAT
5.96e-34FFCP PHASE1:Hg19::chr1:119837700..119837705,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr1:119837700..119837705, +
5.96e-34FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:45399263..45399274, +
5.96e-34FFCP PHASE2:Hg19::chr6:169691363..169691375,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:169691363..169691375, -
5.96e-34FFCP PHASE2:Hg19::chr9:140349856..140349859,-#_0bcc5e51b0fea80a33c7281fa81290dap36@NELF
5.96e-34FFCP PHASE1:Hg19::chr15:55806847..55806854,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr15:55806847..55806854, -
5.96e-34FFCP PHASE2:Hg19::chr6:141743015..141743025,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:141743015..141743025, +
5.96e-34FFCP PHASE2:Hg19::chr17:63533845..63533851,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr17:63533845..63533851, -
5.96e-34FFCP PHASE1:Hg19::chr2:118846114..118846125,+#_0bcc5e51b0fea80a33c7281fa81290dap6@INSIG2
5.96e-34FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_0bcc5e51b0fea80a33c7281fa81290dap@chr6:45405393..45405412, +
5.96e-34FFCP PHASE1:Hg19::chr12:65386452..65386492,-#_0bcc5e51b0fea80a33c7281fa81290dap@chr12:65386452..65386492, -
1.71e-30FFCP PHASE1:Hg19::chr2:75751179..75751194,+#_e39e68a690a7b2e8c228953a340643b5p1@BC018659
1.71e-30FFCP PHASE2:Hg19::chr2:75751179..75751194,+#_e39e68a690a7b2e8c228953a340643b5p1@BC018659
1.59e-27FFCP PHASE1:Hg19::chr14:29047235..29047244,+#_9f9f00b15aed320f8a35df6eec2f171cp@chr14:29047235..29047244, +
1.59e-27FFCP PHASE2:Hg19::chr14:29047235..29047244,+#_9f9f00b15aed320f8a35df6eec2f171cp@chr14:29047235..29047244, +
3.56e-27FFCP PHASE2:Hg19::chr17:171082..171101,+#_59fcbd933f4dd12753b3028f44dd0956p@chr17:171082..171101, +
3.56e-27FFCP PHASE1:Hg19::chr17:171082..171101,+#_59fcbd933f4dd12753b3028f44dd0956p@chr17:171082..171101, +
7.93e-25FFCP PHASE1:Hg19::chr7:27163592..27163605,-#_d8d2ecc3d8c72e0ee70c77991d4c9dc6p@chr7:27163592..27163605, -
7.93e-25FFCP PHASE2:Hg19::chr7:27163592..27163605,-#_d8d2ecc3d8c72e0ee70c77991d4c9dc6p@chr7:27163592..27163605, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004821&oldid=3274379"