CL:0000077: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=mesothelial cell | |name=mesothelial cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:29, 12 September 2014
| Name: | mesothelial cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A flattened epithelial cell of mesenchymal origin that lines the serous cavity." [GOC:tfm, ISBN:0721662544] | ||
| Xrefs: |
| ||
| Synonyms: | "mesotheliocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000076(squamous epithelial cell),CL:0000213(lining cell) |
|---|---|
| develops_from: | CL:0000222(mesodermal cell) |
Children
| is a: | CL:0002625 (seminiferous tubule epithelial cell) |
|---|---|
| derives from: | FF:0000099 (human mesothelial cell sample),FF:0102424 (mesothelioma cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10845-111E8 (mesothelioma cell line:NCI-H28)
- 10846-111E9 (mesothelioma cell line:NCI-H226)
- 10847-111F1 (mesothelioma cell line:NCI-H2052)
- 10848-111F2 (mesothelioma cell line:NCI-H2452)
- 10849-111F3 (mesothelioma cell line:Mero-14)
- 10850-111F4 (mesothelioma cell line:Mero-25)
- 10851-111F5 (mesothelioma cell line:Mero-41)
- 10852-111F6 (mesothelioma cell line:Mero-48a)
... further results Mouse (Mus musculus)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10845-111E8 (mesothelioma cell line:NCI-H28)
- 10846-111E9 (mesothelioma cell line:NCI-H226)
- 10847-111F1 (mesothelioma cell line:NCI-H2052)
- 10848-111F2 (mesothelioma cell line:NCI-H2452)
- 10849-111F3 (mesothelioma cell line:Mero-14)
- 10850-111F4 (mesothelioma cell line:Mero-25)
- 10851-111F5 (mesothelioma cell line:Mero-41)
- 10852-111F6 (mesothelioma cell line:Mero-48a)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000077 (mesothelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.97e-72 | FFCP PHASE1:Hg19::chr12:120502376..120502385,+#_74424a3bda9bf76a89fd4812cb91d630 | p8@CCDC64 |
| 1.97e-72 | FFCP PHASE2:Hg19::chr12:120502376..120502385,+#_74424a3bda9bf76a89fd4812cb91d630 | p8@CCDC64 |
| 1.92e-69 | FFCP PHASE2:Hg19::chr13:34727644..34727660,-#_ce0b82bb391d71bcf53648703f632c47 | p@chr13:34727644..34727660, - |
| 1.92e-69 | FFCP PHASE1:Hg19::chr13:34727644..34727660,-#_ce0b82bb391d71bcf53648703f632c47 | p@chr13:34727644..34727660, - |
| 2.23e-64 | FFCP PHASE2:Hg19::chr14:100003871..100003888,-#_e35083b97a50a4f00c6ff5e19f66cc81 | p@chr14:100003871..100003888, - |
| 2.23e-64 | FFCP PHASE1:Hg19::chr14:100003871..100003888,-#_e35083b97a50a4f00c6ff5e19f66cc81 | p@chr14:100003871..100003888, - |
| 9.09e-55 | FFCP PHASE2:Hg19::chr20:1612073..1612090,+#_64103e5534174516c159e00da12bc53b | p@chr20:1612073..1612090, + |
| 9.09e-55 | FFCP PHASE1:Hg19::chr20:1612073..1612090,+#_64103e5534174516c159e00da12bc53b | p@chr20:1612073..1612090, + |
| 6.83e-51 | FFCP PHASE2:Hg19::chr19:10687954..10687965,-#_994ba33e48eea05acff77f258f5a6b7c | p@chr19:10687954..10687965, - |
| 6.83e-51 | FFCP PHASE1:Hg19::chr19:10687954..10687965,-#_994ba33e48eea05acff77f258f5a6b7c | p@chr19:10687954..10687965, - |
| 1.71e-49 | FFCP PHASE2:Hg19::chr2:234451186..234451205,-#_e89626041f531e460c7e10b3d034e681 | p5@USP40 |
| 1.71e-49 | FFCP PHASE1:Hg19::chr2:234451186..234451205,-#_e89626041f531e460c7e10b3d034e681 | p5@USP40 |
| 6.45e-47 | FFCP PHASE1:Hg19::chr11:117150581..117150628,+#_ec17df339d2494ae111bd40fdcd35189 | p@chr11:117150581..117150628, + |
| 6.45e-47 | FFCP PHASE2:Hg19::chr11:117150581..117150628,+#_ec17df339d2494ae111bd40fdcd35189 | p@chr11:117150581..117150628, + |
| 8.87e-47 | FFCP PHASE2:Hg19::chrX:64898352..64898387,+#_b0794602e853f204460af25bc6bf2620 | p10@MSN |
| 8.87e-47 | FFCP PHASE1:Hg19::chrX:64898352..64898387,+#_b0794602e853f204460af25bc6bf2620 | p10@MSN |
| 7.54e-46 | FFCP PHASE2:Hg19::chr22:27622736..27622761,-#_624c2f33fc7be8a3c9eea99a9486057e | p2@uc003adh.2 |
| 7.54e-46 | FFCP PHASE1:Hg19::chr22:27622736..27622761,-#_624c2f33fc7be8a3c9eea99a9486057e | p2@uc003adh.2 |
| 4.57e-44 | FFCP PHASE2:Hg19::chr2:25326312..25326322,+#_6f67da0cb525b93ce885c42af1abe0db | p@chr2:25326312..25326322, + |
| 4.57e-44 | FFCP PHASE1:Hg19::chr2:25326312..25326322,+#_6f67da0cb525b93ce885c42af1abe0db | p@chr2:25326312..25326322, + |
| 3.83e-42 | FFCP PHASE1:Hg19::chr20:1435971..1435982,-#_77b23fc0d7f5de5f138f620b48e25239 | p@chr20:1435971..1435982, - |
| 3.83e-42 | FFCP PHASE2:Hg19::chr19:38902076..38902104,-#_77b23fc0d7f5de5f138f620b48e25239 | p@chr19:38902076..38902104, - |
| 3.83e-42 | FFCP PHASE1:Hg19::chr19:38902076..38902104,-#_77b23fc0d7f5de5f138f620b48e25239 | p@chr19:38902076..38902104, - |
| 3.83e-42 | FFCP PHASE2:Hg19::chr20:1435971..1435982,-#_77b23fc0d7f5de5f138f620b48e25239 | p@chr20:1435971..1435982, - |
| 8.89e-42 | FFCP PHASE2:Hg19::chrX:140048723..140048740,+#_77226ffc88fa0ec35274831bc68b3aac | p@chrX:140048723..140048740, + |
| 8.89e-42 | FFCP PHASE1:Hg19::chrX:140048723..140048740,+#_77226ffc88fa0ec35274831bc68b3aac | p@chrX:140048723..140048740, + |
| 9.54e-42 | FFCP PHASE2:Hg19::chr2:220309819..220309833,+#_3315da0d9a9169f1209a47e99e8ce000 | p26@SPEG |
| 9.54e-42 | FFCP PHASE1:Hg19::chr2:220309819..220309833,+#_3315da0d9a9169f1209a47e99e8ce000 | p26@SPEG |
| 2.76e-39 | FFCP PHASE2:Hg19::chr8:98900255..98900325,+#_25f6b67da87a47580d85b84e327dc7f7 | p2@MATN2 |
| 2.76e-39 | FFCP PHASE1:Hg19::chr8:98900255..98900325,+#_25f6b67da87a47580d85b84e327dc7f7 | p2@MATN2 |
| 4.43e-39 | FFCP PHASE2:Hg19::chr8:74498501..74498510,-#_b28e70d33c8bbdeaec48b5b0850bd1f7 | p@chr8:74498501..74498510, - |
| 4.43e-39 | FFCP PHASE1:Hg19::chr8:74498501..74498510,-#_b28e70d33c8bbdeaec48b5b0850bd1f7 | p@chr8:74498501..74498510, - |
| 1.4e-38 | FFCP PHASE2:Hg19::chr1:240926680..240926686,+#_325caaebcb5285bdfb886fe604da6bb0 | p@chr1:240926680..240926686, + |
| 1.4e-38 | FFCP PHASE1:Hg19::chr1:240926680..240926686,+#_325caaebcb5285bdfb886fe604da6bb0 | p@chr1:240926680..240926686, + |
| 1.71e-37 | FFCP PHASE2:Hg19::chr8:19171466..19171477,+#_abbda087072f70e6ed127b9690ab1abc | p6@SH2D4A |
| 1.71e-37 | FFCP PHASE1:Hg19::chr8:19171466..19171477,+#_abbda087072f70e6ed127b9690ab1abc | p6@SH2D4A |
| 4.07e-37 | FFCP PHASE2:Hg19::chr19:10688044..10688070,-#_13d450f11ab30e21820dfdb0ff15766e | p@chr19:10688044..10688070, - |
| 4.07e-37 | FFCP PHASE1:Hg19::chr19:10688044..10688070,-#_13d450f11ab30e21820dfdb0ff15766e | p@chr19:10688044..10688070, - |
| 1.9e-36 | FFCP PHASE1:Hg19::chr19:10688000..10688029,-#_26a0db458cf93b62c0646060b3f4bc47 | p@chr19:10688000..10688029, - |
| 1.9e-36 | FFCP PHASE2:Hg19::chr19:10688000..10688029,-#_26a0db458cf93b62c0646060b3f4bc47 | p@chr19:10688000..10688029, - |
| 2.59e-36 | FFCP PHASE1:Hg19::chr12:53344266..53344294,+#_4d252dab61ede7c16bc7a52db981dd70 | p10@KRT18 |
| 2.59e-36 | FFCP PHASE2:Hg19::chr12:53344266..53344294,+#_4d252dab61ede7c16bc7a52db981dd70 | p10@KRT18 |
| 4.12e-35 | FFCP PHASE2:Hg19::chr1:11919027..11919058,-#_256ee15f247fee981c2ddc862a2bfcbe | p2@NPPB |
| 4.12e-35 | FFCP PHASE1:Hg19::chr1:11919027..11919058,-#_256ee15f247fee981c2ddc862a2bfcbe | p2@NPPB |
| 1.27e-34 | FFCP PHASE2:Hg19::chr8:98900132..98900183,+#_d1d23154695137f4772b971c62b74725 | p3@MATN2 |
| 1.27e-34 | FFCP PHASE1:Hg19::chr8:98900132..98900183,+#_d1d23154695137f4772b971c62b74725 | p3@MATN2 |
| 1.62e-34 | FFCP PHASE2:Hg19::chr8:22418409..22418450,+#_253b2d0775b3eee3850cb7583ef9327a | p42@SORBS3 |
| 1.62e-34 | FFCP PHASE1:Hg19::chr8:22418409..22418450,+#_253b2d0775b3eee3850cb7583ef9327a | p42@SORBS3 |
| 2.85e-34 | FFCP PHASE2:Hg19::chr4:142141683..142141694,+#_40ba501245c6eb2b271bb397fc1a4370 | p3@ZNF330 |
| 2.85e-34 | FFCP PHASE1:Hg19::chr4:142141683..142141694,+#_40ba501245c6eb2b271bb397fc1a4370 | p3@ZNF330 |
| 3.81e-34 | FFCP PHASE1:Hg19::chr12:120502386..120502408,+#_b8f0f3f980e07841fed982261bdf0edc | p1@CCDC64 |
| 3.81e-34 | FFCP PHASE2:Hg19::chr12:120502386..120502408,+#_b8f0f3f980e07841fed982261bdf0edc | p1@CCDC64 |
| 5.69e-34 | FFCP PHASE1:Hg19::chr11:27882366..27882372,+#_365beca8bdb3836e81697c5d73580aa5 | p@chr11:27882366..27882372, + |
| 5.69e-34 | FFCP PHASE2:Hg19::chr11:27882366..27882372,+#_365beca8bdb3836e81697c5d73580aa5 | p@chr11:27882366..27882372, + |
| 7.04e-34 | FFCP PHASE2:Hg19::chr9:123128390..123128421,-#_80a6ae3003666169aaed1390c08737d1 | p@chr9:123128390..123128421, - |
| 7.04e-34 | FFCP PHASE1:Hg19::chr9:123128390..123128421,-#_80a6ae3003666169aaed1390c08737d1 | p@chr9:123128390..123128421, - |
| 7.04e-34 | FFCP PHASE1:Hg19::chr11:117150669..117150717,+#_80a6ae3003666169aaed1390c08737d1 | p@chr11:117150669..117150717, + |
| 7.04e-34 | FFCP PHASE2:Hg19::chr2:170115546..170115580,-#_80a6ae3003666169aaed1390c08737d1 | p@chr2:170115546..170115580, - |
| 7.04e-34 | FFCP PHASE1:Hg19::chr2:170115546..170115580,-#_80a6ae3003666169aaed1390c08737d1 | p@chr2:170115546..170115580, - |
| 7.04e-34 | FFCP PHASE2:Hg19::chr11:117150669..117150717,+#_80a6ae3003666169aaed1390c08737d1 | p@chr11:117150669..117150717, + |
| 7.67e-34 | FFCP PHASE1:Hg19::chr18:20419512..20419521,-#_4b82e82f4ab5d486d96b7b293f7cc304 | p@chr18:20419512..20419521, - |
| 7.67e-34 | FFCP PHASE2:Hg19::chr7:6285086..6285095,+#_4b82e82f4ab5d486d96b7b293f7cc304 | p@chr7:6285086..6285095, + |
| 7.67e-34 | FFCP PHASE1:Hg19::chr7:6285086..6285095,+#_4b82e82f4ab5d486d96b7b293f7cc304 | p@chr7:6285086..6285095, + |
| 7.67e-34 | FFCP PHASE2:Hg19::chr14:105952794..105952805,+#_4b82e82f4ab5d486d96b7b293f7cc304 | p18@CRIP1 |
| 7.67e-34 | FFCP PHASE1:Hg19::chr14:105952794..105952805,+#_4b82e82f4ab5d486d96b7b293f7cc304 | p18@CRIP1 |
| 7.67e-34 | FFCP PHASE2:Hg19::chr18:20419512..20419521,-#_4b82e82f4ab5d486d96b7b293f7cc304 | p@chr18:20419512..20419521, - |
| 7.67e-34 | FFCP PHASE2:Hg19::chr7:129940193..129940197,+#_4b82e82f4ab5d486d96b7b293f7cc304 | p@chr7:129940193..129940197, + |
| 7.67e-34 | FFCP PHASE1:Hg19::chr7:129940193..129940197,+#_4b82e82f4ab5d486d96b7b293f7cc304 | p@chr7:129940193..129940197, + |
| 9.88e-34 | FFCP PHASE2:Hg19::chr1:107067629..107067653,+#_ab65db15912a73b9005568589749c158 | p@chr1:107067629..107067653, + |
| 9.88e-34 | FFCP PHASE1:Hg19::chr1:107067629..107067653,+#_ab65db15912a73b9005568589749c158 | p@chr1:107067629..107067653, + |
| 1.27e-32 | FFCP PHASE2:Hg19::chr7:129963582..129963596,+#_04442aab254e0b0768640244e418128e | p@chr7:129963582..129963596, + |
| 1.27e-32 | FFCP PHASE1:Hg19::chr7:129963582..129963596,+#_04442aab254e0b0768640244e418128e | p@chr7:129963582..129963596, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr18:7813360..7813367,+#_0f1b53cccf6e8e7deb29002558ee2881 | p@chr18:7813360..7813367, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr13:38083829..38083838,+#_0f1b53cccf6e8e7deb29002558ee2881 | p@chr13:38083829..38083838, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr13:38083829..38083838,+#_0f1b53cccf6e8e7deb29002558ee2881 | p@chr13:38083829..38083838, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr12:120502465..120502470,+#_0f1b53cccf6e8e7deb29002558ee2881 | p12@CCDC64 |
| 4.52e-32 | FFCP PHASE2:Hg19::chr12:120502465..120502470,+#_0f1b53cccf6e8e7deb29002558ee2881 | p12@CCDC64 |
| 4.52e-32 | FFCP PHASE1:Hg19::chr18:7813360..7813367,+#_0f1b53cccf6e8e7deb29002558ee2881 | p@chr18:7813360..7813367, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr9:35027511..35027519,-#_0f1b53cccf6e8e7deb29002558ee2881 | p@chr9:35027511..35027519, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr9:35027511..35027519,-#_0f1b53cccf6e8e7deb29002558ee2881 | p@chr9:35027511..35027519, - |
| 4.52e-32 | FFCP PHASE2:Hg19::chr4:28801404..28801410,-#_0f1b53cccf6e8e7deb29002558ee2881 | p@chr4:28801404..28801410, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr4:28801404..28801410,-#_0f1b53cccf6e8e7deb29002558ee2881 | p@chr4:28801404..28801410, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:7506866..7506875,+#_0f1b53cccf6e8e7deb29002558ee2881 | p8@OLFML1 |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:7506866..7506875,+#_0f1b53cccf6e8e7deb29002558ee2881 | p8@OLFML1 |
| 1.1e-31 | FFCP PHASE2:Hg19::chr9:130285057..130285094,-#_f69844e20ffc4946b67a2819645e0fc6 | p@chr9:130285057..130285094, - |
| 1.1e-31 | FFCP PHASE1:Hg19::chr9:130285057..130285094,-#_f69844e20ffc4946b67a2819645e0fc6 | p@chr9:130285057..130285094, - |
| 1.14e-31 | FFCP PHASE2:Hg19::chr22:37892776..37892816,-#_d9730f94beb7d054be53c414d0358d02 | p4@CARD10 |
| 1.14e-31 | FFCP PHASE1:Hg19::chr22:37892776..37892816,-#_d9730f94beb7d054be53c414d0358d02 | p4@CARD10 |
| 2.08e-31 | FFCP PHASE1:Hg19::chr12:132863063..132863075,-#_97b71cec7e8ec77e8867795cd50eefdb | p4@GALNT9 |
| 2.08e-31 | FFCP PHASE2:Hg19::chr12:132863063..132863075,-#_97b71cec7e8ec77e8867795cd50eefdb | p4@GALNT9 |
| 6.45e-31 | FFCP PHASE2:Hg19::chrX:8472470..8472482,-#_da191c96e0bb891d7f7c6f4e90b1b796 | p@chrX:8472470..8472482, - |
| 6.45e-31 | FFCP PHASE1:Hg19::chrX:8472470..8472482,-#_da191c96e0bb891d7f7c6f4e90b1b796 | p@chrX:8472470..8472482, - |
| 9.91e-31 | FFCP PHASE2:Hg19::chr19:10687983..10687998,-#_af463be426b049590385566c79554638 | p@chr19:10687983..10687998, - |
| 9.91e-31 | FFCP PHASE1:Hg19::chr19:10687983..10687998,-#_af463be426b049590385566c79554638 | p@chr19:10687983..10687998, - |
| 1.67e-30 | FFCP PHASE2:Hg19::chr1:248020627..248020645,+#_c72b59f99b1456e3790374aa6dec2a99 | p4@TRIM58 |
| 1.67e-30 | FFCP PHASE1:Hg19::chr1:248020627..248020645,+#_c72b59f99b1456e3790374aa6dec2a99 | p4@TRIM58 |
| 2.2e-30 | FFCP PHASE2:Hg19::chr12:132863007..132863039,-#_4b1c987a6c3ce505732ce4b0e4460973 | p2@GALNT9 |
| 2.2e-30 | FFCP PHASE1:Hg19::chr12:132863007..132863039,-#_4b1c987a6c3ce505732ce4b0e4460973 | p2@GALNT9 |
| 2.8e-30 | FFCP PHASE2:Hg19::chr22:27622699..27622733,-#_6a1979568d3ce35653aef637c487b292 | p1@uc003adh.2 |
| 2.8e-30 | FFCP PHASE1:Hg19::chr22:27622699..27622733,-#_6a1979568d3ce35653aef637c487b292 | p1@uc003adh.2 |
