CL:0000650: Difference between revisions
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|located_in= | |located_in= | ||
|name=mesangial cell | |name=mesangial cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:35, 12 September 2014
| Name: | mesangial cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell type that encapsulates the capillaries and venules in the kidney. This cell secretes mesangial matrix that provides the structural support for the capillaries." [GOC:tfm, http://www.copewithcytokines.de/cope.cgi?key | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000669(pericyte cell) |
|---|---|
| develops_from: | CL:0000134(mesenchymal cell) |
Children
| is a: | CL:0002173 (extraglomerular mesangial cell) |
|---|---|
| derives from: | FF:0000154 (human renal mesangial cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11679-122H5 (Renal Mesangial Cells, donor3)
Mouse (Mus musculus)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11679-122H5 (Renal Mesangial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000650 (mesangial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.34e-79 | FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_61a0c4d9261aa0425ffb7a5af6e0f17d | p@chr2:133426030..133426041, - |
| 2.34e-79 | FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_61a0c4d9261aa0425ffb7a5af6e0f17d | p@chr2:133426030..133426041, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_898e54d71de34a62efa5874a314d6d35 | p23@TTC39A |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_898e54d71de34a62efa5874a314d6d35 | p23@TTC39A |
| 2.03e-66 | FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_04b53897b3b89373d41bbe96e5afeb8e | p@chr2:133426106..133426117, - |
| 2.03e-66 | FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_04b53897b3b89373d41bbe96e5afeb8e | p@chr2:133426106..133426117, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_e06e2c48482c2f61efcb174bf1d03026 | p8@PAX2 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_e06e2c48482c2f61efcb174bf1d03026 | p@chr10:134535354..134535366, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_e06e2c48482c2f61efcb174bf1d03026 | p8@PAX2 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_e06e2c48482c2f61efcb174bf1d03026 | p@chr10:134535354..134535366, - |
| 3.11e-50 | FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_a80a5fc4240490533fca6fca4ea8f213 | p19@PEMT |
| 3.11e-50 | FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_a80a5fc4240490533fca6fca4ea8f213 | p19@PEMT |
| 4.52e-50 | FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_5ddf0b374814c8b270ce773c7a9cb19f | p@chr9:81641483..81641491, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_5ddf0b374814c8b270ce773c7a9cb19f | p10@PAX2 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_5ddf0b374814c8b270ce773c7a9cb19f | p@chr9:81641483..81641491, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_5ddf0b374814c8b270ce773c7a9cb19f | p10@PAX2 |
| 8.98e-41 | FFCP PHASE2:Hg19::chr17:171082..171101,+#_dc5a03cd9fe2cda2b0e93c7112fe02c1 | p@chr17:171082..171101, + |
| 8.98e-41 | FFCP PHASE1:Hg19::chr17:171082..171101,+#_dc5a03cd9fe2cda2b0e93c7112fe02c1 | p@chr17:171082..171101, + |
| 1.1e-40 | FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_990c45ab46b4cd629c1abcd2af0031e9 | p@chr3:172384246..172384250, + |
| 1.1e-40 | FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_990c45ab46b4cd629c1abcd2af0031e9 | p@chr3:172384246..172384250, + |
| 1.64e-40 | FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_d0aa02ecd58d9ace2e77cd04451a07c6 | p@chr1:45087902..45087912, + |
| 1.64e-40 | FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_d0aa02ecd58d9ace2e77cd04451a07c6 | p@chr1:45087902..45087912, + |
| 3.68e-40 | FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_70ddf9b7ee0e0ff58a5ebbbdde75db36 | p5@PAX2 |
| 3.68e-40 | FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_70ddf9b7ee0e0ff58a5ebbbdde75db36 | p5@PAX2 |
| 8.2e-37 | FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_7b68829a114ed45ef1ba83829367240b | p6@PAX2 |
| 8.2e-37 | FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_7b68829a114ed45ef1ba83829367240b | p6@PAX2 |
| 9.84e-37 | FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_daada4563769eaf18c1a9f2513604edd | p3@CRB2 |
| 9.84e-37 | FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_daada4563769eaf18c1a9f2513604edd | p3@CRB2 |
| 6.0e-34 | FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_cebdc7cebc7c4f790384c40ab9ee6020 | p@chr2:113984760..113984792, + |
| 6.0e-34 | FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_cebdc7cebc7c4f790384c40ab9ee6020 | p@chr2:113984760..113984792, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_ac1721b2460b4f47484dec13f1815e73 | p@chr7:27164585..27164612, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:555661..555679,+#_ac1721b2460b4f47484dec13f1815e73 | p@chr11:555661..555679, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:858638..858648,+#_ac1721b2460b4f47484dec13f1815e73 | p@chr1:858638..858648, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_ac1721b2460b4f47484dec13f1815e73 | p@chr7:27164585..27164612, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:555661..555679,+#_ac1721b2460b4f47484dec13f1815e73 | p@chr11:555661..555679, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:858638..858648,+#_ac1721b2460b4f47484dec13f1815e73 | p@chr1:858638..858648, + |
| 8.39e-34 | FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_a5469bb9e79062f3881c8b01c8b1bb29 | p13@SPOCK2 |
| 8.39e-34 | FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_a5469bb9e79062f3881c8b01c8b1bb29 | p13@SPOCK2 |
| 1.17e-33 | FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_7d21267c65b5ed88051174cd0c44ff48 | p25@PHLDB1 |
| 1.17e-33 | FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_7d21267c65b5ed88051174cd0c44ff48 | p25@PHLDB1 |
| 3.35e-32 | FFCP PHASE1:Hg19::chr2:693362..693373,+#_ce9279fab62a7050ab8154175c7b4d5c | p@chr2:693362..693373, + |
| 3.35e-32 | FFCP PHASE2:Hg19::chr2:693362..693373,+#_ce9279fab62a7050ab8154175c7b4d5c | p@chr2:693362..693373, + |
| 2.54e-31 | FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_0c7e10f8304da141ee77ecd95ae960fd | p1@RIPPLY1 |
| 2.54e-31 | FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_0c7e10f8304da141ee77ecd95ae960fd | p1@RIPPLY1 |
| 8.05e-30 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_5bf0d384b5efca0e7f0188d2233caaa4 | p@chr17:171147..171161, + |
| 8.05e-30 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_5bf0d384b5efca0e7f0188d2233caaa4 | p@chr17:171147..171161, + |
| 2.96e-29 | FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_c2c0ddc6230b7ca48f9632c63004e88e | p@chr2:165477405..165477418, - |
| 2.96e-29 | FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_c2c0ddc6230b7ca48f9632c63004e88e | p@chr2:165477405..165477418, - |
| 4.55e-29 | FFCP PHASE1:Hg19::chr1:874109..874143,+#_2c658deef369616933e83cc3b89f5af7 | p@chr1:874109..874143, + |
| 4.55e-29 | FFCP PHASE2:Hg19::chr1:874109..874143,+#_2c658deef369616933e83cc3b89f5af7 | p@chr1:874109..874143, + |
| 1.43e-28 | FFCP PHASE2:Hg19::chr2:113999199..113999214,+#_0d88a34f97c049d95aaff54c6efdd4c7 | p@chr2:113999199..113999214, + |
| 1.43e-28 | FFCP PHASE1:Hg19::chr2:113999199..113999214,+#_0d88a34f97c049d95aaff54c6efdd4c7 | p@chr2:113999199..113999214, + |
| 1.83e-27 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_3ac59417519fc6b7e6200ae4d809537d | p@chr16:86604624..86604648, + |
| 1.83e-27 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_3ac59417519fc6b7e6200ae4d809537d | p7@LRRN4 |
| 1.83e-27 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_3ac59417519fc6b7e6200ae4d809537d | p7@LRRN4 |
| 1.83e-27 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_3ac59417519fc6b7e6200ae4d809537d | p@chr16:86604624..86604648, + |
| 2.74e-27 | FFCP PHASE2:Hg19::chr19:56091499..56091517,-#_9b77851050df126db8cdfd7a88bf5d98 | p@chr19:56091499..56091517, - |
| 2.74e-27 | FFCP PHASE1:Hg19::chr19:56091499..56091517,-#_9b77851050df126db8cdfd7a88bf5d98 | p@chr19:56091499..56091517, - |
| 2.78e-26 | FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_c78773fa539165ad610da15d4a159f1b | p@chr9:112260040..112260045, + |
| 2.78e-26 | FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_c78773fa539165ad610da15d4a159f1b | p@chr9:112260040..112260045, + |
| 4.63e-26 | FFCP PHASE1:Hg19::chr22:30645170..30645182,-#_34e44e22230663b49a272939ad44ac46 | p@chr22:30645170..30645182, - |
| 4.63e-26 | FFCP PHASE2:Hg19::chr22:30645170..30645182,-#_34e44e22230663b49a272939ad44ac46 | p@chr22:30645170..30645182, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:22419319..22419327,+#_578534c8ab58fb761ad45f6fd99626be | p@chr8:22419319..22419327, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:22419319..22419327,+#_578534c8ab58fb761ad45f6fd99626be | p@chr8:22419319..22419327, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr8:28196820..28196830,+#_7285b0489a4172dffab5818c38046889 | p@chr8:28196820..28196830, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:176973165..176973169,-#_7285b0489a4172dffab5818c38046889 | p@chr2:176973165..176973169, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr10:102505946..102505949,+#_7285b0489a4172dffab5818c38046889 | p14@PAX2 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_7285b0489a4172dffab5818c38046889 | p@chr20:6031540..6031548, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr11:32457397..32457404,-#_7285b0489a4172dffab5818c38046889 | p15@WT1 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:31833005..31833017,-#_7285b0489a4172dffab5818c38046889 | p@chr6:31833005..31833017, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr17:15555143..15555150,-#_7285b0489a4172dffab5818c38046889 | p12@TRIM16 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr8:28196820..28196830,+#_7285b0489a4172dffab5818c38046889 | p@chr8:28196820..28196830, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr2:176973165..176973169,-#_7285b0489a4172dffab5818c38046889 | p@chr2:176973165..176973169, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_7285b0489a4172dffab5818c38046889 | p@chr20:6031540..6031548, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr10:102505946..102505949,+#_7285b0489a4172dffab5818c38046889 | p14@PAX2 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:31833005..31833017,-#_7285b0489a4172dffab5818c38046889 | p@chr6:31833005..31833017, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr11:32457397..32457404,-#_7285b0489a4172dffab5818c38046889 | p15@WT1 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr17:15555143..15555150,-#_7285b0489a4172dffab5818c38046889 | p12@TRIM16 |
| 2.37e-25 | FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_5d084f73bba8b44a3d21bdc74da71c2b | p1@ENST00000523364, p1@uc010kux.1 |
| 2.37e-25 | FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_5d084f73bba8b44a3d21bdc74da71c2b | p1@ENST00000523364, p1@uc010kux.1 |
| 4.38e-25 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_f855739564415040d0063e1d4a6cfb5e | p16@HOXA10 |
| 4.38e-25 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_f855739564415040d0063e1d4a6cfb5e | p16@HOXA10 |
| 4.43e-25 | FFCP PHASE2:Hg19::chr1:149908263..149908281,-#_8cb47a67aec129311f9ea4409af4f9cd | p6@MTMR11 |
| 4.43e-25 | FFCP PHASE1:Hg19::chr1:149908263..149908281,-#_8cb47a67aec129311f9ea4409af4f9cd | p6@MTMR11 |
| 7.09e-25 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_731051feef0b9bb641aa336ebd5967f9 | p4@PAX2 |
| 7.09e-25 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_731051feef0b9bb641aa336ebd5967f9 | p4@PAX2 |
| 3.76e-24 | FFCP PHASE1:Hg19::chr1:46797583..46797614,-#_e705e90b028fa73354a3e05262e46278 | p@chr1:46797583..46797614, - |
| 3.76e-24 | FFCP PHASE2:Hg19::chr1:46797583..46797614,-#_e705e90b028fa73354a3e05262e46278 | p@chr1:46797583..46797614, - |
| 7.62e-24 | FFCP PHASE1:Hg19::chr6:94129519..94129544,+#_ffdd1a8e9e75ff9e1e82ec3a62a32189 | p@chr6:94129519..94129544, + |
| 7.62e-24 | FFCP PHASE2:Hg19::chr6:94129519..94129544,+#_ffdd1a8e9e75ff9e1e82ec3a62a32189 | p@chr6:94129519..94129544, + |
| 8.02e-24 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_630723f07e4da26561169122ad426eee | p@chr2:693380..693398, + |
| 8.02e-24 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_630723f07e4da26561169122ad426eee | p@chr2:693380..693398, + |
| 8.98e-24 | FFCP PHASE1:Hg19::chr2:133426077..133426103,-#_bc75b3386c1a89e475f9f476d2c25cb9 | p@chr2:133426077..133426103, - |
| 8.98e-24 | FFCP PHASE2:Hg19::chr2:133426077..133426103,-#_bc75b3386c1a89e475f9f476d2c25cb9 | p@chr2:133426077..133426103, - |
| 1.99e-23 | FFCP PHASE1:Hg19::chr11:32457350..32457361,+#_88e703a7944da158498f815eb5de10e2 | p5@WT1-AS |
| 1.99e-23 | FFCP PHASE2:Hg19::chr11:32457350..32457361,+#_88e703a7944da158498f815eb5de10e2 | p5@WT1-AS |
| 4.37e-23 | FFCP PHASE1:Hg19::chr2:176968471..176968476,-#_8a7c5c5c2d9a48184fa1a18c1c124a81 | p@chr2:176968471..176968476, - |
| 4.37e-23 | FFCP PHASE2:Hg19::chr2:176968471..176968476,-#_8a7c5c5c2d9a48184fa1a18c1c124a81 | p@chr2:176968471..176968476, - |
| 4.89e-23 | FFCP PHASE2:Hg19::chr12:15592437..15592438,+#_9869a361bf661ae2556160b4cf52e7aa | p1@ENST00000469884 |
| 4.89e-23 | FFCP PHASE1:Hg19::chr12:15592437..15592438,+#_9869a361bf661ae2556160b4cf52e7aa | p1@ENST00000469884 |
