UBERON:0001709: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=upper jaw | |name=upper jaw region | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0004089 | |part_of=UBERON:0004089 | ||
Latest revision as of 17:19, 12 September 2014
| Name: | upper jaw region | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [Wikipedia:Upper_jaw, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"dorsal mandibular arch" RELATED [] "dorsal pharyngeal arch 1" RELATED INCONSISTENT [] "dorsal visceral arch 1" EXACT [ZFA:0001272] "palatoquadrate arch" EXACT [] "upper pharyngeal jaw" EXACT [ZFA:0001272] "upper pharyngeal jaws" RELATED [] | ||
| Comments: | AO notes: Note isa/partof difference MA/FMA. See notes for jaw w.r.t skeletal element vs subdivision of head | ||
| Alt_id: | UBERON:FMA_54397-MA_0001908-XAO_0003087-ZFA_0001272 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-Gray189.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0011595(jaw region) |
|---|---|
| part_of: | UBERON:0004089(midface) |
Children
| part of: | UBERON:0003277 (skeleton of upper jaw),UBERON:0003323 (mesenchyme of upper jaw),UBERON:0011597 (bone of upper jaw) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001709 (upper jaw region), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_56d24e048da30aad5aad3a2c6274b733 | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_56d24e048da30aad5aad3a2c6274b733 | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_b6d4c00d19a7545146a24575d207e591 | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_b6d4c00d19a7545146a24575d207e591 | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_b6d4c00d19a7545146a24575d207e591 | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_b6d4c00d19a7545146a24575d207e591 | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_b6d4c00d19a7545146a24575d207e591 | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_b6d4c00d19a7545146a24575d207e591 | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_b6d4c00d19a7545146a24575d207e591 | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_b6d4c00d19a7545146a24575d207e591 | p13@C17orf67 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_79d9f1ae677b83dffcd45b7462faf504 | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_79d9f1ae677b83dffcd45b7462faf504 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_79d9f1ae677b83dffcd45b7462faf504 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_79d9f1ae677b83dffcd45b7462faf504 | p14@MAB21L2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_c5b5d309b73692a89e78db814f006248 | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_c5b5d309b73692a89e78db814f006248 | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_8965bd240707b6b4144c952bf1d39915 | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_8965bd240707b6b4144c952bf1d39915 | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_8965bd240707b6b4144c952bf1d39915 | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_8965bd240707b6b4144c952bf1d39915 | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_8965bd240707b6b4144c952bf1d39915 | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_8965bd240707b6b4144c952bf1d39915 | p9@C17orf67 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_f5c5a2f466aaf191b14eabe74b7df46e | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_f5c5a2f466aaf191b14eabe74b7df46e | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_43bbf23473c2c44452ed46aa5d06f924 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_43bbf23473c2c44452ed46aa5d06f924 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_43bbf23473c2c44452ed46aa5d06f924 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_43bbf23473c2c44452ed46aa5d06f924 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_43bbf23473c2c44452ed46aa5d06f924 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_43bbf23473c2c44452ed46aa5d06f924 | p@chr5:75913767..75913778, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_757e5c48832031fd1af1de02517f68a4 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_757e5c48832031fd1af1de02517f68a4 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_757e5c48832031fd1af1de02517f68a4 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_757e5c48832031fd1af1de02517f68a4 | p23@FLT1 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_29dce4313e9b3e5ace02ee225edbaf97 | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_29dce4313e9b3e5ace02ee225edbaf97 | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_29dce4313e9b3e5ace02ee225edbaf97 | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_29dce4313e9b3e5ace02ee225edbaf97 | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_29dce4313e9b3e5ace02ee225edbaf97 | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_29dce4313e9b3e5ace02ee225edbaf97 | p@chr8:57353666..57353675, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_88f05b2e8abd57706953892bac954364 | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_88f05b2e8abd57706953892bac954364 | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_88f05b2e8abd57706953892bac954364 | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_88f05b2e8abd57706953892bac954364 | p8@LHX8 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_88f05b2e8abd57706953892bac954364 | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_88f05b2e8abd57706953892bac954364 | p8@LHX8 |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_f236ba74308db75366741e6b334dbb62 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_f236ba74308db75366741e6b334dbb62 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_f236ba74308db75366741e6b334dbb62 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_f236ba74308db75366741e6b334dbb62 | p@chr5:75912831..75912842, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_c6132c0c10333183c54fac754c8e6e97 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_c6132c0c10333183c54fac754c8e6e97 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_c6132c0c10333183c54fac754c8e6e97 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_c6132c0c10333183c54fac754c8e6e97 | p@chr9:125165007..125165016, + |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_059bc0912565ba3c9a09493e9d95fbac | p5@PENK |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_059bc0912565ba3c9a09493e9d95fbac | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_059bc0912565ba3c9a09493e9d95fbac | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_059bc0912565ba3c9a09493e9d95fbac | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_059bc0912565ba3c9a09493e9d95fbac | p5@PENK |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_059bc0912565ba3c9a09493e9d95fbac | p@chr10:15760985..15760992, - |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_506d9f536c91de562253f85e49b97380 | p9@SIX1 |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_506d9f536c91de562253f85e49b97380 | p9@SIX1 |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_004a1d9e554377c249015417525ce3dd | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_004a1d9e554377c249015417525ce3dd | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_3feeb0455aa6dc1467e24cec7ecd7464 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_3feeb0455aa6dc1467e24cec7ecd7464 | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_3feeb0455aa6dc1467e24cec7ecd7464 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_3feeb0455aa6dc1467e24cec7ecd7464 | p@chr13:58291223..58291226, + |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_0c090d183d4004944a22ee727e9fba1f | p12@FBN2 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_0c090d183d4004944a22ee727e9fba1f | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_0c090d183d4004944a22ee727e9fba1f | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_0c090d183d4004944a22ee727e9fba1f | p12@FBN2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_0c090d183d4004944a22ee727e9fba1f | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_0c090d183d4004944a22ee727e9fba1f | p4@PLAC1 |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_7ddd3cb828b2d88065a65916a14d3c40 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_7ddd3cb828b2d88065a65916a14d3c40 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_7ddd3cb828b2d88065a65916a14d3c40 | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_7ddd3cb828b2d88065a65916a14d3c40 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_7ddd3cb828b2d88065a65916a14d3c40 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_7ddd3cb828b2d88065a65916a14d3c40 | p@chr8:57354360..57354367, + |
| 9.99e-30 | FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_22cd17ee56b6a5eee0a4afb833e950eb | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_22cd17ee56b6a5eee0a4afb833e950eb | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_22cd17ee56b6a5eee0a4afb833e950eb | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_22cd17ee56b6a5eee0a4afb833e950eb | p7@SHOX2 |
| 1.33e-29 | FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_9a9f83bf39bc8c777adf9e9d67128af3 | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_9a9f83bf39bc8c777adf9e9d67128af3 | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_9a9f83bf39bc8c777adf9e9d67128af3 | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_9a9f83bf39bc8c777adf9e9d67128af3 | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_9a9f83bf39bc8c777adf9e9d67128af3 | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_9a9f83bf39bc8c777adf9e9d67128af3 | p@chr17:79071218..79071221, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_dc1dbcb181d0fc5899c8f296086b6caa | p@chr1:21904551..21904569, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_dc1dbcb181d0fc5899c8f296086b6caa | p@chr1:21904551..21904569, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_bb5879f75c96d4291f8481edd7cab3d8 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_bb5879f75c96d4291f8481edd7cab3d8 | p18@MEF2D |
| 3.16e-29 | FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_bb5879f75c96d4291f8481edd7cab3d8 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_bb5879f75c96d4291f8481edd7cab3d8 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_bb5879f75c96d4291f8481edd7cab3d8 | p18@MEF2D |
| 3.16e-29 | FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_bb5879f75c96d4291f8481edd7cab3d8 | p@chr14:89044406..89044416, + |
| 4.2e-29 | FFCP PHASE2:Hg19::chr13:36046127..36046134,+#_780b8d7be3e84308a2cbbe4a169e1387 | p@chr13:36046127..36046134, + |
| 4.2e-29 | FFCP PHASE1:Hg19::chr15:52606315..52606320,-#_780b8d7be3e84308a2cbbe4a169e1387 | p@chr15:52606315..52606320, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Superior maxillary arch located on the anterior and lateral sides of the skull.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
