UBERON:0002360: Difference between revisions
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|located_in= | |located_in= | ||
|name=meninx | |name=meninx | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0010743 | |part_of=UBERON:0010743 | ||
Latest revision as of 17:30, 12 September 2014
| Name: | meninx | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Membrane organ that surrounds the brain and the spinal cord." [FMA:9589, http://www.shsu.edu/~bio_mlt/Chap15.html, Wikipedia:Meninx] | ||
| Xrefs: |
| ||
| Synonyms: |
"layer of meninges" EXACT [] "meningeal layer" EXACT [] | ||
| Comments: | Editor note: consider separate term for meninges aka collection of meninges. Note in EHDAA2 pia mater etc are part of the meninges. Also consider a new class for primary/primitive meninx. AO notes: Not consider part of the CNS/neuraxis in FMA. Taxon notes: Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx). | ||
| Alt_id: | UBERON:FMA_9589-MA_0001113 | ||
| Subset: |
organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000094(membrane organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0010743(meningeal cluster) |
Children
| is a: | UBERON:0000391 (leptomeninx),UBERON:0002363 (dura mater),UBERON:0010115 (future dura mater) |
|---|---|
| derives from: | FF:0010188 (human cerebral meninges - adult sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10041-101F5 (dura mater, adult, donor1)
- 10188-103D8 (cerebral meninges, adult)
- 10265-104D4
- 10279-104E9
- 10293-104G5
- 10307-104I1
- 10321-105A6
- 10335-105C2
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002360 (meninx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.75e-130 | FFCP PHASE1:Hg19::chr6:55740051..55740056,-#_b01e53c867af9c4f756a02f351416a82 | p5@BMP5 |
| 1.75e-130 | FFCP PHASE2:Hg19::chr6:55740051..55740056,-#_b01e53c867af9c4f756a02f351416a82 | p5@BMP5 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:78078199..78078208,+#_2540e27173afd3eddb1e488ae9563bbb | p8@C10orf11 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:217560615..217560623,-#_2540e27173afd3eddb1e488ae9563bbb | p73@IGFBP5 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:112931383..112931390,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931383..112931390, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:112931404..112931414,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931404..112931414, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:45234395..45234400,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr2:45234395..45234400, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:217560615..217560623,-#_2540e27173afd3eddb1e488ae9563bbb | p73@IGFBP5 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:43349847..43349852,+#_2540e27173afd3eddb1e488ae9563bbb | p@chr8:43349847..43349852, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:79398656..79398666,-#_2540e27173afd3eddb1e488ae9563bbb | p25@KCNMA1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:112931404..112931414,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931404..112931414, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:112931435..112931445,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931435..112931445, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:154712764..154712772,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr4:154712764..154712772, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:45234395..45234400,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr2:45234395..45234400, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:43349847..43349852,+#_2540e27173afd3eddb1e488ae9563bbb | p@chr8:43349847..43349852, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:39892092..39892099,+#_2540e27173afd3eddb1e488ae9563bbb | p@chr5:39892092..39892099, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:48651813..48651830,-#_2540e27173afd3eddb1e488ae9563bbb | p14@CEBPD |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:78078199..78078208,+#_2540e27173afd3eddb1e488ae9563bbb | p8@C10orf11 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:112931435..112931445,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931435..112931445, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:154712764..154712772,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr4:154712764..154712772, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:122434930..122434939,+#_2540e27173afd3eddb1e488ae9563bbb | p@chr5:122434930..122434939, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:39892092..39892099,+#_2540e27173afd3eddb1e488ae9563bbb | p@chr5:39892092..39892099, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:48651813..48651830,-#_2540e27173afd3eddb1e488ae9563bbb | p14@CEBPD |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:112931366..112931373,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931366..112931373, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:122434930..122434939,+#_2540e27173afd3eddb1e488ae9563bbb | p@chr5:122434930..122434939, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:79398656..79398666,-#_2540e27173afd3eddb1e488ae9563bbb | p25@KCNMA1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:112931366..112931373,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931366..112931373, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:112931383..112931390,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931383..112931390, - |
| 1.16e-78 | FFCP PHASE2:Hg19::chr2:18695697..18695706,-#_58935e1aaf8f188b7ab0a72e9ee23094 | p@chr2:18695697..18695706, - |
| 1.16e-78 | FFCP PHASE1:Hg19::chr2:18695697..18695706,-#_58935e1aaf8f188b7ab0a72e9ee23094 | p@chr2:18695697..18695706, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:43349758..43349771,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr8:43349758..43349771, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr19:2309357..2309359,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr19:2309357..2309359, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr7:115135068..115135092,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr7:115135068..115135092, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:43349794..43349803,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr8:43349794..43349803, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:66031903..66031907,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr1:66031903..66031907, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:154711058..154711075,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr4:154711058..154711075, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr3:147794257..147794262,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr3:147794257..147794262, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:43349794..43349803,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr8:43349794..43349803, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr7:115135068..115135092,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr7:115135068..115135092, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr18:14221875..14221879,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr18:14221875..14221879, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:72274182..72274188,-#_d349b09c3c0de3f893d0727092ed4cba | p18@EYA1 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr16:73094120..73094122,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr16:73094120..73094122, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:72274182..72274188,-#_d349b09c3c0de3f893d0727092ed4cba | p18@EYA1 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr16:73094120..73094122,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr16:73094120..73094122, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr9:23524699..23524703,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr9:23524699..23524703, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr19:2309357..2309359,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr19:2309357..2309359, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:43349758..43349771,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr8:43349758..43349771, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr18:14221875..14221879,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr18:14221875..14221879, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:66031903..66031907,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr1:66031903..66031907, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:154711058..154711075,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr4:154711058..154711075, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr3:147794257..147794262,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr3:147794257..147794262, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr9:23524699..23524703,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr9:23524699..23524703, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:183775501..183775512,+#_0731a0c8f59d4d5e761dfd2fbabbcff1 | p13@RGL1 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr11:44360838..44360846,+#_0731a0c8f59d4d5e761dfd2fbabbcff1 | p@chr11:44360838..44360846, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:65990750..65990756,+#_0731a0c8f59d4d5e761dfd2fbabbcff1 | p@chr1:65990750..65990756, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:65990750..65990756,+#_0731a0c8f59d4d5e761dfd2fbabbcff1 | p@chr1:65990750..65990756, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr11:44360838..44360846,+#_0731a0c8f59d4d5e761dfd2fbabbcff1 | p@chr11:44360838..44360846, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:183775501..183775512,+#_0731a0c8f59d4d5e761dfd2fbabbcff1 | p13@RGL1 |
| 4.49e-40 | FFCP PHASE2:Hg19::chr9:74167593..74167609,-#_6d0f789fc40014983620cd1204967225 | p@chr9:74167593..74167609, - |
| 4.49e-40 | FFCP PHASE1:Hg19::chr9:74167593..74167609,-#_6d0f789fc40014983620cd1204967225 | p@chr9:74167593..74167609, - |
| 3.28e-37 | FFCP PHASE1:Hg19::chr2:201521549..201521593,+#_ff40207c5e660305c42b25b46ce7b702 | p@chr2:201521549..201521593, + |
| 3.28e-37 | FFCP PHASE2:Hg19::chr2:201521549..201521593,+#_ff40207c5e660305c42b25b46ce7b702 | p@chr2:201521549..201521593, + |
| 3.61e-34 | FFCP PHASE2:Hg19::chr9:23524722..23524736,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr9:23524722..23524736, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr4:154711263..154711272,+#_14396e55d1ce1491a5b19261428e3ba0 | p@chr4:154711263..154711272, + |
| 3.61e-34 | FFCP PHASE1:Hg19::chr9:23524722..23524736,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr9:23524722..23524736, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr9:23524772..23524783,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr9:23524772..23524783, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr4:154711263..154711272,+#_14396e55d1ce1491a5b19261428e3ba0 | p@chr4:154711263..154711272, + |
| 3.61e-34 | FFCP PHASE1:Hg19::chr9:23524772..23524783,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr9:23524772..23524783, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr3:112931461..112931474, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr2:45715445..45715482,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr2:45715445..45715482, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr4:26165179..26165190,+#_14396e55d1ce1491a5b19261428e3ba0 | p47@RBPJ |
| 3.61e-34 | FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr3:112931461..112931474, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr2:45715445..45715482,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr2:45715445..45715482, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr4:26165179..26165190,+#_14396e55d1ce1491a5b19261428e3ba0 | p47@RBPJ |
| 5.04e-34 | FFCP PHASE1:Hg19::chr5:175223687..175223688,+#_df8360237dc497acf7a881b5d0116b4c | p29@CPLX2 |
| 5.04e-34 | FFCP PHASE1:Hg19::chr1:1914706..1914716,-#_df8360237dc497acf7a881b5d0116b4c | p@chr1:1914706..1914716, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr17:53398728..53398764,+#_df8360237dc497acf7a881b5d0116b4c | p@chr17:53398728..53398764, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr5:175223687..175223688,+#_df8360237dc497acf7a881b5d0116b4c | p29@CPLX2 |
| 5.04e-34 | FFCP PHASE2:Hg19::chr1:1914706..1914716,-#_df8360237dc497acf7a881b5d0116b4c | p@chr1:1914706..1914716, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr5:176047686..176047693,-#_df8360237dc497acf7a881b5d0116b4c | p@chr5:176047686..176047693, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr17:53398728..53398764,+#_df8360237dc497acf7a881b5d0116b4c | p@chr17:53398728..53398764, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr5:176047686..176047693,-#_df8360237dc497acf7a881b5d0116b4c | p@chr5:176047686..176047693, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:44360939..44360945,+#_90d45e6cd89477fc78d24c803bb851b4 | p@chr11:44360939..44360945, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr6:102487198..102487211,+#_90d45e6cd89477fc78d24c803bb851b4 | p@chr6:102487198..102487211, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:157069619..157069633,-#_90d45e6cd89477fc78d24c803bb851b4 | p3@ETV3L |
| 7.05e-34 | FFCP PHASE2:Hg19::chr6:102487198..102487211,+#_90d45e6cd89477fc78d24c803bb851b4 | p@chr6:102487198..102487211, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr20:36979501..36979520,-#_90d45e6cd89477fc78d24c803bb851b4 | p@chr20:36979501..36979520, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:44360939..44360945,+#_90d45e6cd89477fc78d24c803bb851b4 | p@chr11:44360939..44360945, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr20:36979501..36979520,-#_90d45e6cd89477fc78d24c803bb851b4 | p@chr20:36979501..36979520, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr13:66878571..66878580,-#_90d45e6cd89477fc78d24c803bb851b4 | p@chr13:66878571..66878580, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr2:44903688..44903705,+#_90d45e6cd89477fc78d24c803bb851b4 | p7@CAMKMT |
| 7.05e-34 | FFCP PHASE2:Hg19::chr13:66878571..66878580,-#_90d45e6cd89477fc78d24c803bb851b4 | p@chr13:66878571..66878580, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:157069619..157069633,-#_90d45e6cd89477fc78d24c803bb851b4 | p3@ETV3L |
| 7.05e-34 | FFCP PHASE2:Hg19::chr2:44903688..44903705,+#_90d45e6cd89477fc78d24c803bb851b4 | p7@CAMKMT |
| 4.04e-31 | FFCP PHASE1:Hg19::chr6:160679846..160679859,-#_f2de405958d03f6aebd97438abc007f2 | p1@SLC22A2 |
| 4.04e-31 | FFCP PHASE2:Hg19::chr6:160679846..160679859,-#_f2de405958d03f6aebd97438abc007f2 | p1@SLC22A2 |
| 1.02e-30 | FFCP PHASE2:Hg19::chr8:17351823..17351832,+#_f388cc85784beec31f5c5acb0f573a8f | p@chr8:17351823..17351832, + |
| 1.02e-30 | FFCP PHASE1:Hg19::chr8:17351823..17351832,+#_f388cc85784beec31f5c5acb0f573a8f | p@chr8:17351823..17351832, + |
| 4.08e-26 | FFCP PHASE1:Hg19::chr20:4904851..4904855,-#_40f07111a89f762c67eab64c73320543 | p@chr20:4904851..4904855, - |
| 4.08e-26 | FFCP PHASE2:Hg19::chr20:4904851..4904855,-#_40f07111a89f762c67eab64c73320543 | p@chr20:4904851..4904855, - |
